mRNA_S-firma_F_contig11122.1488.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11122.1488.1
Unique NamemRNA_S-firma_F_contig11122.1488.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11122.1488.1 vs. uniprot
Match: A0A024G906_9STRA (HIT-type domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G906_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.280e-8
Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = 1 
Query:    1 TGRIRRLAKTVRVMDEDTKRQIQDARLESLEADNYNPE--DVVGDSDDAYDAVEEALGGSVKAGXXXXXXXXXXXTLKRCVGGSRRTRLTSRLTHLHSDVYSLPSKPLTYYLYGMVARRPTPTLAEDGLPPRAAPPGAGAGKSADAAAIEAYLAAAASPSRLPSLKTCSICGYSAPYSCTRCGARFCSARC 567
            +GR  +L+KT++ +DE+T+  +++ARLESLEADNY  +  D + D  D  D  E  +   VKA                    S++ R   ++  L    Y  P+K L   ++          LA   L  +++   +     +  ++   YL AAA PS  P+   C ICGY A YSCTRCG+RFC  +C
Sbjct:   35 SGRTTKLSKTMKHVDEETRAIVRNARLESLEADNYGIDEADCITDQADLKD--ELYIDEKVKAVPKNNSPRV-----------SKKPR--DKIEKLLKARY--PAKRLAQLVFEEFGHSEASFLAS--LSRKSSADQSNERYKSIWSSAPNYLTAAAKPSTTPARHFCCICGYFASYSCTRCGSRFCRIKC 206
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BLAST of mRNA_S-firma_F_contig11122.1488.1 vs. uniprot
Match: A0A5J4YUW7_PORPP (Zinc finger HIT domain-containing protein 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUW7_PORPP)

HSP 1 Score: 53.5 bits (127), Expect = 2.280e-5
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:  448 YLAAAASPSRLPSLKTCSICGYSAPYSCTRCGARFCSARC 567
            Y  A A PSR P+ + CS+CG+ APY+C RCG+RFC+ +C
Sbjct:  150 YEHARALPSRFPARRICSVCGFQAPYTCVRCGSRFCTVQC 189
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BLAST of mRNA_S-firma_F_contig11122.1488.1 vs. uniprot
Match: A0A3Q2QY33_FUNHE (Zinc finger HIT-type containing 1 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2QY33_FUNHE)

HSP 1 Score: 52.4 bits (124), Expect = 2.970e-5
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  448 YLAAAASPSRLPSLKTCSICGYSAPYSCTRCGARFCSARCV 570
            YL+AAA PS LP+   C +CG+ + Y+CT CG R+CS+RC+
Sbjct:   99 YLSAAAPPSSLPARHFCCVCGFPSHYTCTTCGGRYCSSRCL 139
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BLAST of mRNA_S-firma_F_contig11122.1488.1 vs. uniprot
Match: A0A023EHL3_AEDAL (Putative secreted protein n=3 Tax=Stegomyia TaxID=53541 RepID=A0A023EHL3_AEDAL)

HSP 1 Score: 52.4 bits (124), Expect = 3.430e-5
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:  448 YLAAAASPSRLPSLKTCSICGYSAPYSCTRCGARFCSARCV 570
            Y  AAA PS+LP    C++CG+ + Y+CT CG R+CS RC+
Sbjct:  108 YFTAAAQPSKLPERHFCAVCGFPSSYTCTACGTRYCSVRCL 148
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BLAST of mRNA_S-firma_F_contig11122.1488.1 vs. uniprot
Match: A0A4Z2BNQ8_9TELE (HIT-type domain-containing protein n=2 Tax=Tetraodontidae TaxID=31031 RepID=A0A4Z2BNQ8_9TELE)

HSP 1 Score: 52.0 bits (123), Expect = 4.380e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  448 YLAAAASPSRLPSLKTCSICGYSAPYSCTRCGARFCSARCV 570
            YL+AAA PS LP    C +CGY + Y+CT CG R+CS++C+
Sbjct:  103 YLSAAAPPSSLPPRHFCCVCGYPSHYTCTTCGGRYCSSKCL 143
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BLAST of mRNA_S-firma_F_contig11122.1488.1 vs. uniprot
Match: A0A3Q1AWJ2_AMPOC (Zinc finger, HIT-type containing 1 n=1 Tax=Amphiprion ocellaris TaxID=80972 RepID=A0A3Q1AWJ2_AMPOC)

HSP 1 Score: 51.6 bits (122), Expect = 5.230e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  448 YLAAAASPSRLPSLKTCSICGYSAPYSCTRCGARFCSARCV 570
            YL+AAA PS LP    C +CG+ + Y+CT CG R+CS+RC+
Sbjct:   94 YLSAAAPPSSLPPRHFCCVCGFPSHYTCTTCGGRYCSSRCL 134
[Close]
BLAST of mRNA_S-firma_F_contig11122.1488.1 vs. uniprot
Match: A0A3B4ZPV5_9TELE (Zinc finger, HIT-type containing 1 n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4ZPV5_9TELE)

HSP 1 Score: 51.6 bits (122), Expect = 5.680e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  448 YLAAAASPSRLPSLKTCSICGYSAPYSCTRCGARFCSARCV 570
            YL+AAA PS LP    C +CG+ + Y+CT CG R+CS+RC+
Sbjct:  101 YLSAAAPPSSLPPRHFCCVCGFPSHYTCTTCGGRYCSSRCL 141
[Close]
BLAST of mRNA_S-firma_F_contig11122.1488.1 vs. uniprot
Match: A0A3B4ZVU0_9TELE (Zinc finger, HIT-type containing 1 n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4ZVU0_9TELE)

HSP 1 Score: 51.6 bits (122), Expect = 7.340e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  448 YLAAAASPSRLPSLKTCSICGYSAPYSCTRCGARFCSARCV 570
            YL+AAA PS LP    C +CG+ + Y+CT CG R+CS+RC+
Sbjct:  118 YLSAAAPPSSLPPRHFCCVCGFPSHYTCTTCGGRYCSSRCL 158
[Close]
BLAST of mRNA_S-firma_F_contig11122.1488.1 vs. uniprot
Match: A0A3B3WCU5_9TELE (Zinc finger HIT-type containing 1 n=1 Tax=Poecilia mexicana TaxID=48701 RepID=A0A3B3WCU5_9TELE)

HSP 1 Score: 51.2 bits (121), Expect = 7.840e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  448 YLAAAASPSRLPSLKTCSICGYSAPYSCTRCGARFCSARCV 570
            YL+AAA PS LP    C +CG+ + Y+CT CG R+CS+RC+
Sbjct:   99 YLSAAAPPSSLPPRLFCCVCGFPSHYTCTTCGGRYCSSRCL 139
[Close]
BLAST of mRNA_S-firma_F_contig11122.1488.1 vs. uniprot
Match: M3ZIP4_XIPMA (HIT-type domain-containing protein n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=M3ZIP4_XIPMA)

HSP 1 Score: 51.2 bits (121), Expect = 8.230e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  448 YLAAAASPSRLPSLKTCSICGYSAPYSCTRCGARFCSARCV 570
            YL+AAA PS LP    C +CG+ + Y+CT CG R+CS+RC+
Sbjct:  102 YLSAAAPPSSLPPRLFCCVCGFPSHYTCTTCGGRYCSSRCL 142
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11122.1488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A024G906_9STRA1.280e-832.46HIT-type domain-containing protein n=1 Tax=Albugo ... [more]
A0A5J4YUW7_PORPP2.280e-555.00Zinc finger HIT domain-containing protein 1 n=1 Ta... [more]
A0A3Q2QY33_FUNHE2.970e-553.66Zinc finger HIT-type containing 1 n=1 Tax=Fundulus... [more]
A0A023EHL3_AEDAL3.430e-551.22Putative secreted protein n=3 Tax=Stegomyia TaxID=... [more]
A0A4Z2BNQ8_9TELE4.380e-553.66HIT-type domain-containing protein n=2 Tax=Tetraod... [more]
A0A3Q1AWJ2_AMPOC5.230e-553.66Zinc finger, HIT-type containing 1 n=1 Tax=Amphipr... [more]
A0A3B4ZPV5_9TELE5.680e-553.66Zinc finger, HIT-type containing 1 n=1 Tax=Stegast... [more]
A0A3B4ZVU0_9TELE7.340e-553.66Zinc finger, HIT-type containing 1 n=1 Tax=Stegast... [more]
A0A3B3WCU5_9TELE7.840e-553.66Zinc finger HIT-type containing 1 n=1 Tax=Poecilia... [more]
M3ZIP4_XIPMA8.230e-553.66HIT-type domain-containing protein n=1 Tax=Xiphoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11122contigS-firma_F_contig11122:117..704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G8J5
Preferred nameZNHIT1
PFAMszf-HIT
Max annot lvl2759|Eukaryota
KEGG koko:K11663,ko:K12846
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0002682,GO:0002694,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009890,GO:0009892,GO:0009909,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0019899,GO:0031056,GO:0031063,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031491,GO:0031974,GO:0031981,GO:0032268,GO:0032944,GO:0032991,GO:0033043,GO:0033044,GO:0034728,GO:0040008,GO:0042127,GO:0042129,GO:0042742,GO:0042802,GO:0042826,GO:0043044,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048580,GO:0048638,GO:0048831,GO:0050670,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051249,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070603,GO:0070663,GO:0071824,GO:0071840,GO:0080090,GO:0090311,GO:0097346,GO:0098542,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2001141
Evalue3.7e-12
EggNOG OGsKOG3362@1|root,KOG3362@2759|Eukaryota
Descriptionregulation of histone deacetylation
COG categoryU
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, HIT-type
Ec32 orthologEc-14_003240.1
Exons1
Model size588
Cds size588
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.2134197-CDS-S-firma_F_contig11122:116..7041622815662.2134197-CDS-S-firma_F_contig11122:116..704Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11122 117..704 +
1696949486.6822398-CDS-S-firma_F_contig11122:116..7041696949486.6822398-CDS-S-firma_F_contig11122:116..704Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11122 117..704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11122.1488.1prot_S-firma_F_contig11122.1488.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11122 117..704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11122.1488.1

>prot_S-firma_F_contig11122.1488.1 ID=prot_S-firma_F_contig11122.1488.1|Name=mRNA_S-firma_F_contig11122.1488.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=196bp
TGRIRRLAKTVRVMDEDTKRQIQDARLESLEADNYNPEDVVGDSDDAYDA
VEEALGGSVKAGVKRGRKPKRKPTLKRCVGGSRRTRLTSRLTHLHSDVYS
LPSKPLTYYLYGMVARRPTPTLAEDGLPPRAAPPGAGAGKSADAAAIEAY
LAAAASPSRLPSLKTCSICGYSAPYSCTRCGARFCSARCVAWLLG*
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mRNA from alignment at S-firma_F_contig11122:117..704+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11122.1488.1 ID=mRNA_S-firma_F_contig11122.1488.1|Name=mRNA_S-firma_F_contig11122.1488.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=588bp|location=Sequence derived from alignment at S-firma_F_contig11122:117..704+ (Sphaerotrichia firma ET2_F female)
ACAGGCCGCATTCGGCGCCTTGCCAAGACCGTCCGTGTCATGGACGAAGA
CACAAAGCGACAGATTCAGGACGCGCGACTGGAATCATTGGAGGCTGACA
ACTACAACCCTGAGGACGTGGTTGGTGACAGCGACGACGCGTACGACGCG
GTGGAGGAAGCCCTTGGGGGGTCGGTCAAAGCCGGCGTCAAGCGCGGCCG
AAAGCCGAAACGGAAGCCCACCCTGAAGCGGTGCGTGGGGGGAAGCAGAC
GCACGAGATTGACAAGTCGCCTCACCCACCTCCACAGCGACGTGTATTCC
TTGCCCTCCAAGCCCCTGACGTACTACTTGTATGGCATGGTTGCCCGGCG
CCCCACTCCCACCCTGGCAGAAGACGGGCTGCCACCCCGTGCGGCGCCCC
CAGGTGCGGGCGCTGGGAAATCTGCAGACGCAGCTGCCATTGAAGCGTAC
CTTGCGGCGGCGGCGTCGCCCTCCCGGCTTCCCTCCCTTAAAACCTGCAG
CATTTGTGGTTACTCTGCGCCGTACTCGTGTACCCGGTGTGGTGCCAGGT
TTTGCAGTGCAAGGTGTGTCGCGTGGTTGTTGGGTTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig11122:117..704+

>mRNA_S-firma_F_contig11122.1488.1 ID=mRNA_S-firma_F_contig11122.1488.1|Name=mRNA_S-firma_F_contig11122.1488.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1176bp|location=Sequence derived from alignment at S-firma_F_contig11122:117..704+ (Sphaerotrichia firma ET2_F female)
ACAGGCCGCATTCGGCGCCTTGCCAAGACCGTCCGTGTCATGGACGAAGA
CACAAAGCGACAGATTCAGGACGCGCGACTGGAATCATTGGAGGCTGACA
ACTACAACCCTGAGGACGTGGTTGGTGACAGCGACGACGCGTACGACGCG
GTGGAGGAAGCCCTTGGGGGGTCGGTCAAAGCCGGCGTCAAGCGCGGCCG
AAAGCCGAAACGGAAGCCCACCCTGAAGCGGTGCGTGGGGGGAAGCAGAC
GCACGAGATTGACAAGTCGCCTCACCCACCTCCACAGCGACGTGTATTCC
TTGCCCTCCAAGCCCCTGACGTACTACTTGTATGGCATGGTTGCCCGGCG
CCCCACTCCCACCCTGGCAGAAGACGGGCTGCCACCCCGTGCGGCGCCCC
CAGGTGCGGGCGCTGGGAAATCTGCAGACGCAGCTGCCATTGAAGCGTAC
CTTGCGGCGGCGGCGTCGCCCTCCCGGCTTCCCTCCCTTAAAACCTGCAG
CATTTGTGGTTACTCTGCGCCGTACTCGTGTACCCGGTGTGGTGCCAGGT
TTTGCAGTGCAAGGTGTGTCGCGTGGTTGTTGGGTTGAACAGGCCGCATT
CGGCGCCTTGCCAAGACCGTCCGTGTCATGGACGAAGACACAAAGCGACA
GATTCAGGACGCGCGACTGGAATCATTGGAGGCTGACAACTACAACCCTG
AGGACGTGGTTGGTGACAGCGACGACGCGTACGACGCGGTGGAGGAAGCC
CTTGGGGGGTCGGTCAAAGCCGGCGTCAAGCGCGGCCGAAAGCCGAAACG
GAAGCCCACCCTGAAGCGGTGCGTGGGGGGAAGCAGACGCACGAGATTGA
CAAGTCGCCTCACCCACCTCCACAGCGACGTGTATTCCTTGCCCTCCAAG
CCCCTGACGTACTACTTGTATGGCATGGTTGCCCGGCGCCCCACTCCCAC
CCTGGCAGAAGACGGGCTGCCACCCCGTGCGGCGCCCCCAGGTGCGGGCG
CTGGGAAATCTGCAGACGCAGCTGCCATTGAAGCGTACCTTGCGGCGGCG
GCGTCGCCCTCCCGGCTTCCCTCCCTTAAAACCTGCAGCATTTGTGGTTA
CTCTGCGCCGTACTCGTGTACCCGGTGTGGTGCCAGGTTTTGCAGTGCAA
GGTGTGTCGCGTGGTTGTTGGGTTGA
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