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Homology
BLAST of mRNA_S-firma_F_contig11121.1487.1 vs. uniprot
Match: D7FYV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYV8_ECTSI) HSP 1 Score: 398 bits (1023), Expect = 2.380e-126 Identity = 212/266 (79.70%), Postives = 239/266 (89.85%), Query Frame = 2
Query: 1184 SGKTESRGKEEGGGAGSIGSDEANNWGMDDSIDVNAIRMEMMEKAGYAKRGESDAGDQWITIDEDGSDSSVDKMKEAVADSLRGELLGQGSLKGADADAIVEEVLQDTDLAKYFDEEFEKGTAALRALAEELKTDEGAVSYADQMAQELAELLKAEEDKAAQEIEKRQAPLKAKLEKATAELEEAMVAAEEARREFEGDFVLQLMSFRQKGVVRQAAFVGAILIANQAVFQAILVADDRGGNPVIALGGLAVSAALVWYYGYRPIK 1981
SG+ ES GKEE G GS+ SDEANNWGMDDSIDVNAIRM++MEKAGY KR +SDAG++WIT+DEDG+D ++D+MK+AVA+SLR ELLGQ SL ADA A+VEEVLQDTDLAK+FDEEFEKGT+ALR LAEELKTDEGAVSYAD+MAQELAELL+ EEDKAA EIE+RQAP+KAKL+KAT + AAEEARREFEGDFVLQLMSFRQKGV+RQAAFVGA+LIANQAV+QAILVADDRGGNP ALGGLA SAALVWYYGYRP+K
Sbjct: 84 SGQAESLGKEEEGAVGSMTSDEANNWGMDDSIDVNAIRMKLMEKAGYTKREDSDAGEEWITVDEDGTDETMDRMKDAVAESLRNELLGQDSLNEADASALVEEVLQDTDLAKFFDEEFEKGTSALRELAEELKTDEGAVSYADRMAQELAELLQVEEDKAAAEIERRQAPVKAKLDKATXXXXXXVAAAEEARREFEGDFVLQLMSFRQKGVLRQAAFVGAVLIANQAVYQAILVADDRGGNPAFALGGLAASAALVWYYGYRPLK 349
BLAST of mRNA_S-firma_F_contig11121.1487.1 vs. uniprot
Match: A0A835YTP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP5_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 6.910e-15 Identity = 55/154 (35.71%), Postives = 91/154 (59.09%), Query Frame = 2
Query: 1511 LAKYFDEEFEKGTAALRALAEELKTDEGAVSYADQMAQELAELLKAEEDKAAQEIEKRQAPLKAKLEKATAELEEAMVAAEEARREFEGDFVLQLMSFRQKGVVRQAAFVGAILIANQAVFQAILVADDRGGNPVIALGGLAVSAALVWYYGYR 1972
L+ + D+E +G LR+LA++L + +GA A+ + + + +K + E + + ++E+ A LE + ++ + E D+V QL SF KGVV+Q+A V AIL+ANQA +QA+L+ + RGG PV A LA+ AA +++YG R
Sbjct: 171 LSSFLDDELNRGEEELRSLAQDLVSKDGAPGE-QFFAEAFSSAYEEQTEKMLGQYESKAGKIMQRVEREKANLEREVENMKDLQASVEKDWVFQLQSFPTKGVVKQSALVSAILLANQAAYQALLIVERRGGEPVTAALELALVAAALYFYGLR 323
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-19_002650.1 |
| Exons | 5 |
| Model size | 3223 |
| Cds size | 723 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815662.1013992-UTR-S-firma_F_contig11121:40..1304 | 1622815662.1013992-UTR-S-firma_F_contig11121:40..1304 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11121 41..1304 + |
| 1696949486.6167488-UTR-S-firma_F_contig11121:40..1304 | 1696949486.6167488-UTR-S-firma_F_contig11121:40..1304 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11121 41..1304 + |
| 1622815662.1740088-UTR-S-firma_F_contig11121:3564..4800 | 1622815662.1740088-UTR-S-firma_F_contig11121:3564..4800 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11121 3565..4800 + |
| 1696949486.6681817-UTR-S-firma_F_contig11121:3564..4800 | 1696949486.6681817-UTR-S-firma_F_contig11121:3564..4800 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11121 3565..4800 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815662.1126602-CDS-S-firma_F_contig11121:1304..1331 | 1622815662.1126602-CDS-S-firma_F_contig11121:1304..1331 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11121 1305..1331 + |
| 1696949486.6248393-CDS-S-firma_F_contig11121:1304..1331 | 1696949486.6248393-CDS-S-firma_F_contig11121:1304..1331 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11121 1305..1331 + |
| 1622815662.1232295-CDS-S-firma_F_contig11121:1960..2091 | 1622815662.1232295-CDS-S-firma_F_contig11121:1960..2091 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11121 1961..2091 + |
| 1696949486.6327903-CDS-S-firma_F_contig11121:1960..2091 | 1696949486.6327903-CDS-S-firma_F_contig11121:1960..2091 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11121 1961..2091 + |
| 1622815662.1361372-CDS-S-firma_F_contig11121:2413..2531 | 1622815662.1361372-CDS-S-firma_F_contig11121:2413..2531 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11121 2414..2531 + |
| 1696949486.6423862-CDS-S-firma_F_contig11121:2413..2531 | 1696949486.6423862-CDS-S-firma_F_contig11121:2413..2531 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11121 2414..2531 + |
| 1622815662.1506763-CDS-S-firma_F_contig11121:2831..2978 | 1622815662.1506763-CDS-S-firma_F_contig11121:2831..2978 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11121 2832..2978 + |
| 1696949486.651393-CDS-S-firma_F_contig11121:2831..2978 | 1696949486.651393-CDS-S-firma_F_contig11121:2831..2978 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11121 2832..2978 + |
| 1622815662.1609359-CDS-S-firma_F_contig11121:3264..3564 | 1622815662.1609359-CDS-S-firma_F_contig11121:3264..3564 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11121 3265..3564 + |
| 1696949486.6592429-CDS-S-firma_F_contig11121:3264..3564 | 1696949486.6592429-CDS-S-firma_F_contig11121:3264..3564 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11121 3265..3564 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig11121.1487.1 >prot_S-firma_F_contig11121.1487.1 ID=prot_S-firma_F_contig11121.1487.1|Name=mRNA_S-firma_F_contig11121.1487.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=241bp
MDDSIDVNAIRMEMMEKAGYAKRGESDAGDQWITIDEDGSDSSVDKMKEA VADSLRGELLGQGSLKGADADAIVEEVLQDTDLAKYFDEEFEKGTAALRA LAEELKTDEGAVSYADQMAQELAELLKAEEDKAAQEIEKRQAPLKAKLEK ATAELEEAMVAAEEARREFEGDFVLQLMSFRQKGVVRQAAFVGAILIANQ AVFQAILVADDRGGNPVIALGGLAVSAALVWYYGYRPIKL* back to topmRNA from alignment at S-firma_F_contig11121:41..4800+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig11121.1487.1 ID=mRNA_S-firma_F_contig11121.1487.1|Name=mRNA_S-firma_F_contig11121.1487.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4760bp|location=Sequence derived from alignment at S-firma_F_contig11121:41..4800+ (Sphaerotrichia firma ET2_F female) GGAGGATTGTCTTCCTTCCTGCTGCTGATGTATGCACCCACCAGTAGTGA
CGTTTGGATTGCATGTGAGAAGTGGGAACATATACCTAGAAGAAGAGCCG
CGAAATCATCAACAGTCCCAGCCGATCCGAATCTAGGCGAATGACGGCGC
CGACGAACCCTATGCACGTTCCAAAAGACTCTGTCGCGGGCTCCTGCTGG
TGTGGCTTCTCGGTTACAGAGACGAAGCTCCTCACCATCACACACGAGCA
GCACCTACTGCTGTAGTGTGTGAATTCAGCACCGCCGCTGTGTGATGTGT
ATGTGCATGTCTTTTTGTTGCGAAGAGGAGAGTCAGTGTCTCCAGACTGC
TGTAGAGATCTAGCCAACGTCTCATCAGCGGGCGAACACTCGTACACTCC
TCTCCTCCTACTCTCCATGACGCCTGTGTGTGGCTCCCCTACGTACGTGG
TCTACGAGACACGAGACACGAGAGGAATTCCTCTAAAAACGTAACATACC
GACGAAAATCGGATGAACTCCTCTGAAAACGTAACATACCGACCGCAAGC
GCCACCACCGAAAAATCGCCTTTTCTACGACACATGTTTGCTCCCTGCAC
GTGCTCGACGGCTCGACGGGTGCCGGTTGTGACTACAGTACGGGATTGCG
TCAGTCGGTTCGTACTACGGAAGTGCTGAGATAGGTGTGCACACCACATG
GGTGGCTGCCCGTGTGCGCTACATTTCGGACGCGCGTGCGGGCGTCACTT
GTCCGTCTGGCGCACAGATTGCAAAATACTCCGGACTAGCTGCTGGGTCT
GCCGCCGATCAGTTGAACTCCACCCCTTCTGTGCCCTCTCACTGCCTGTA
TAAGCGCACGATGCCCCTGGTACGCGATACCGACGCTAGTTCTTTTTTCC
AGAATCGTCGATCCATGTAGGCGATAGTCGTCGCTCGCTGGCAAGAAGGG
GGGGGGGGGGCTGCTTGCTGTGGCATGTAATTTAAAAGTTGAAAGCAGCT
CTACAGCAGTATCTATCTGCGTAAATCTTTTTTGTCTTGCTCTCTGGCCC
GGTTTCACTCGATCGACAGCTTATCTGGCCTCCTGGACAAGACGCCGAGA
GTCGTGTTCATGGGGCGGTATATACTTTTTCTTGAAGTGAGAGACCGTTC
ACGTGTTTGCCCTTTACCACGTCCGCGACCTGCAGCGGCAAGACGGAAAG
CCGTGGGAAAGAAGAGGGCGGAGGGGCGGGGAGCATCGGGAGCGACGAGG
CCAACAACTGGGGCATGGACGACAGTATTGACGTCAACGCGGTGCGTACT
CAAGAGCAATAAACCAGGCAACCAACAGGTGGCATGTTTGATCCGTACAC
ATGTGACCCTGTATGACCATCCCAATCACCTTGGCTCCTCTATTCCCCAA
AGCCACTCTTGAGTACAAACTTGAAAATAAACGCGTTTCTTGTCTTGCAG
CACGTACATACGCACGCAGCACCGCGGCAATTCTCTACAACAGGGGCGTA
GAATGAGCTAGGCTTACTCTCCGAGAGCTGCCGCATCAAGCATCACTATT
CGAACAACGATCGTTAAGGGCCTGTTTGTGCGCGCAACTACAAAAATACG
GTGGCCATACGGAGCCCTTGACCCGTGCATTCGAAGTGTCTCGCGTATCG
TAACGCACCGCGAGTTTACCTTTTTCCGGGGCGAAACGTTGTTTGCCTCT
CCTGGCCTGAAGTTTGATTTGTTCGGGGCATTCGCAGTCTGTGTGCCCTT
GTGAAGTGAGCGCGAGGGTGACCCCTGCATGTTCCCATCTTGTGCTGGTC
GGAACGGTCACCAAAGGCGCAAAATATGCGTAGTTTGTTGAAGAAGATCG
AAGAACATTCCACAACAGGTTTTCAGTGCTGCTATCATCTATCTACTCCT
TGTGCGGGCTCGATCTCCAGATCCGCATGGAGATGATGGAGAAGGCGGGC
TACGCCAAGAGGGGGGAGTCTGATGCCGGCGACCAGTGGATCACGATCGA
CGAGGACGGTTCGGATAGCAGCGTCGACAAAATGAAAGAAGCGGTTGCAG
AGTGAGTGTAAAGAGCGGGCATAGAGCGTGACCATTGTATTGGCGGGGAT
GTCATTTGTTGCGCTCGTACCTTGGCATTTGGCGGCTGGACAAAGGAGTA
GGGCAGGCTCAGCGACTAGTCCAGCCGCACGTTTGGTAAAGCCAAAACGG
TAGATGCAGGTGAGCCAAGTCCGCAGGAAGGCATTAGCATCGGTGCAACG
TGCGCTAGTGTCGACCTTGCACGTGCCTGAACCCTCGTTGTTGTGTCTAG
AAAGCTTTTGGGCTGTCTGCACGATAAGCTGACAGGGTCTCATCGTCCTC
TCCTTCCCTCTTTACTGCTCCAGCTCTCTCCGCGGCGAGCTACTGGGGCA
AGGTTCGCTGAAGGGAGCCGACGCCGACGCCATCGTGGAAGAGGTGCTTC
AGGACACCGACCTGGCCAAGTACTTCGACGAGGAATTCGAAGTGAGGGCT
TGTACTTCGACTTGCCTCGTTCCTTCAAAGCCGTGGCCCGCTTTGAGGGC
TTTTAGGAGACAACTACCCGGAATTGTTCAAGTACTTCGCCCGACGCGCC
TACGATCGCGAAGTGCACCCAGTAGTCGTTGTTCCTGGTGCAGGCGCTGC
TATTTCTCTCTGGCGAGCGCCCTCCGGTGTGTGTGTGTCTGTCCTGCCCC
ATGAATTCCCACCCTCGAAACCACCAACCTCTTTGCAACCGTAAGTGGAA
CCCCATCGTGACTTGGACTTCACCCTGCGTCACTATCGCAGAAAGGGACC
GCCGCCTTGAGAGCGCTAGCGGAGGAGCTCAAGACCGACGAGGGCGCCGT
TTCCTACGCCGACCAGATGGCCCAGGAGCTAGCCGAGCTGCTCAAGGCCG
AAGAAGACAAGGCTGCACAGGAGATCGAGAAGCGACAGGTGCGACGAAAC
AGAAACAGACCTACGTATTGGAATCGAGCCAAGCCCCGCGGTAGATCTCA
GTGGTGCTGCTCTCCTATGGTGCACGGAGTCCTCGGGCCACCACCCTCGA
TCCGTACACGGTTTTCCCGTTTGAACTGGCATATAACTTATTACATACGC
CACGAGGTAATGTGTGCGTCCGGGAAAATTTCGCTCTCGCGTCTATGTAG
TCTAAGGTTTGCTGTTCCAGTTTTTAGGTCTTGCCAAGCTCAACCAATAC
CGCCATCCATGCCAAAACATGCAGGCGCCCCTCAAGGCCAAGCTCGAGAA
GGCAACGGCGGAGCTGGAGGAAGCCATGGTCGCGGCGGAGGAAGCGCGGC
GAGAGTTCGAGGGGGACTTCGTGCTGCAGCTCATGAGCTTCCGTCAGAAG
GGGGTGGTGCGGCAGGCGGCGTTTGTCGGCGCTATCTTGATCGCCAATCA
GGCAGTGTTTCAGGCTATTCTGGTGGCGGACGATAGGGGGGGCAACCCGG
TGATCGCTCTGGGGGGGCTGGCGGTGTCTGCTGCGCTGGTATGGTACTAC
GGCTACAGACCGATCAAGCTTTAGAATTCCGTTTTCTTTTTTACTGCCTC
GTCGGCCAGGGCTTACCTGGTTTCGGCTCGGGGGAGGGCGTGGGGGCTGC
CCTGCGAAAAGGTCTCTTGAACTTTCGTGGTTGTGTTTTCTTTGTTGTTT
CTTCTGGCTGCCGTGGTGCGGCTGCGACATGTCCGACCGGATTTCTTTTG
GGGATCCGTCCGGTATTGTGGTCTCTAGTGTTTTCTGGCGCCCTATCTGC
TACTGCGGAAGTACAACATCGCCCGCTCGCTGTAGATACCCTTGCCAGGT
GTAGAGAGAGGCGTACATGGAGAAAGGCGGCTAGGGGGTCGAAGCGCAGC
AATCGATGGCTGTGAGTGTAGTGGCAAGATGTCTCCAACGGCTCAAGACG
CCGACATTAGCGCCACCCAAGAGCCGCCCCCAAGTTGGTCAAGATTTACT
GGGGGTTTTTCGTCCTGCCGGTAGGCGTGTGCCTGTAGCTCACGAGACTG
CTTGTGGATACAAAGAGCTTTTTTTTCTGTAACGTTCGCGGCGAATCGCG
TTGTTTTTTTGCGGCGGTTTGAGCACTTTCCCAGTCCATGCCAGTTTCCT
TACAGGGCGGGCTGTGCGGTCGCGCTATGATCGGCTTCCTGCCGCGAACA
GTAAAGGCATCCAAATGTTCCCCCACGCACGTACGAGACGGGCATGCAGG
GTCCCCCGTTTTGTCATCCTGCCCAACTATCGTAGTGCGAAACACGTATG
ATACAGACCTGGCCCGTTGTCACGATGCAGCAACAATGAAAACGCGGTTT
TTTAAATGGCCGCTTCTGGCAAAGATCAACCAAACTCTGTTGCCACCTAA
ACGAAACACTAAATACGGCCAATCGTTTGTTGAACGAGGGAAGCAAGCAC
CTAGGTGGGAAAGTAGACGCCAAGTGAACGCAATACTTCGAAGTACATGT
CATAAAAAAGAACTCATGCGACGAGATTAGTTGCTGCAACAATTCGCGAT
CAACCACCAAGTCAACCTCGGCGTACTACCTACCGGCTTTGAGACATGTT
GCTCGTTGACACAAACTCCCCCTCCTCATCTCTGGACGGGTAAGAACACA
ACACGCACAACGAAAAAAAAAAAATACCCATTCTCCGATCGGCCTTGCCA
AAACCGTGGGACAGAAGTCTCCCTCCGCACGCGCGGCAGCCAGCGCAGCA
GCATTTCTCTCCAGGCCAGTTCCCCACCCGCCTTGCCTCTTTGAGGTTAT
TTGCAGAGGC back to topCoding sequence (CDS) from alignment at S-firma_F_contig11121:41..4800+ >mRNA_S-firma_F_contig11121.1487.1 ID=mRNA_S-firma_F_contig11121.1487.1|Name=mRNA_S-firma_F_contig11121.1487.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1446bp|location=Sequence derived from alignment at S-firma_F_contig11121:41..4800+ (Sphaerotrichia firma ET2_F female) ATGGACGACAGTATTGACGTCAACGCGATGGACGACAGTATTGACGTCAA CGCGATCCGCATGGAGATGATGGAGAAGGCGGGCTACGCCAAGAGGGGGG AGTCTGATGCCGGCGACCAGTGGATCACGATCGACGAGGACGGTTCGGAT AGCAGCGTCGACAAAATGAAAGAAGCGGTTGCAGAATCCGCATGGAGATG ATGGAGAAGGCGGGCTACGCCAAGAGGGGGGAGTCTGATGCCGGCGACCA GTGGATCACGATCGACGAGGACGGTTCGGATAGCAGCGTCGACAAAATGA AAGAAGCGGTTGCAGACTCTCTCCGCGGCGAGCTACTGGGGCAAGGTTCG CTGAAGGGAGCCGACGCCGACGCCATCGTGGAAGAGGTGCTTCAGGACAC CGACCTGGCCAAGTACTTCGACGAGGAATTCGAACTCTCTCCGCGGCGAG CTACTGGGGCAAGGTTCGCTGAAGGGAGCCGACGCCGACGCCATCGTGGA AGAGGTGCTTCAGGACACCGACCTGGCCAAGTACTTCGACGAGGAATTCG AAAAAGGGACCGCCGCCTTGAGAGCGCTAGCGGAGGAGCTCAAGACCGAC GAGGGCGCCGTTTCCTACGCCGACCAGATGGCCCAGGAGCTAGCCGAGCT GCTCAAGGCCGAAGAAGACAAGGCTGCACAGGAGATCGAGAAGCGACAGA AAGGGACCGCCGCCTTGAGAGCGCTAGCGGAGGAGCTCAAGACCGACGAG GGCGCCGTTTCCTACGCCGACCAGATGGCCCAGGAGCTAGCCGAGCTGCT CAAGGCCGAAGAAGACAAGGCTGCACAGGAGATCGAGAAGCGACAGGCGC CCCTCAAGGCCAAGCTCGAGAAGGCAACGGCGGAGCTGGAGGAAGCCATG GTCGCGGCGGAGGAAGCGCGGCGAGAGTTCGAGGGGGACTTCGTGCTGCA GCTCATGAGCTTCCGTCAGAAGGGGGTGGTGCGGCAGGCGGCGTTTGTCG GCGCTATCTTGATCGCCAATCAGGCAGTGTTTCAGGCTATTCTGGTGGCG GACGATAGGGGGGGCAACCCGGTGATCGCTCTGGGGGGGCTGGCGGTGTC TGCTGCGCTGGTATGGTACTACGGCTACAGACCGATCAAGCTTTAGGCGC CCCTCAAGGCCAAGCTCGAGAAGGCAACGGCGGAGCTGGAGGAAGCCATG GTCGCGGCGGAGGAAGCGCGGCGAGAGTTCGAGGGGGACTTCGTGCTGCA GCTCATGAGCTTCCGTCAGAAGGGGGTGGTGCGGCAGGCGGCGTTTGTCG GCGCTATCTTGATCGCCAATCAGGCAGTGTTTCAGGCTATTCTGGTGGCG GACGATAGGGGGGGCAACCCGGTGATCGCTCTGGGGGGGCTGGCGGTGTC TGCTGCGCTGGTATGGTACTACGGCTACAGACCGATCAAGCTTTAG back to top
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