mRNA_S-firma_F_contig1112.1486.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1112.1486.1
Unique NamemRNA_S-firma_F_contig1112.1486.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1112.1486.1 vs. uniprot
Match: D7FMN7_ECTSI (Probable fusion protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN7_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.690e-38
Identity = 82/144 (56.94%), Postives = 98/144 (68.06%), Query Frame = 2 
Query:    5 NTILRAHYAFMAHSNGVSIAKLKLAAVAEGGGGDLADGGDGGGDAKLAAAVDLARSASAAPSSVSPTLVQTLMRLYSPPGVLELLVTVSLVTMYHRWTSVYVPVAYEPEILAFVQEHGAALSIDAMSPCTEEQGSWDAIAAETR 436
            NTILRAHYAFMAH NG+ I +L  A   +      AD      DAK  AA+ LA + S  PS+VSP LV  LMR YSP GV+EL+ TVSL  MYHRWT++Y+P  YEPE+L FVQEHGAAL ID   PCT++Q +W+ IA E R
Sbjct:  277 NTILRAHYAFMAHRNGMPIRQLATATNTDSSEAVAADDTI---DAKQVAAMALAEACSGTPSTVSPVLVGLLMRQYSPAGVIELIATVSLAFMYHRWTAIYMPREYEPEVLKFVQEHGAALGIDPERPCTKDQSTWEGIAKEAR 417
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BLAST of mRNA_S-firma_F_contig1112.1486.1 vs. uniprot
Match: D7G5G2_ECTSI (Probable fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G2_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.240e-37
Identity = 81/145 (55.86%), Postives = 101/145 (69.66%), Query Frame = 2 
Query:    2 DNTILRAHYAFMAHSNGVSIAKLKLAAVAEGGGGDLADGGDGGGDAKLAAAVDLARSASAAPSSVSPTLVQTLMRLYSPPGVLELLVTVSLVTMYHRWTSVYVPVAYEPEILAFVQEHGAALSIDAMSPCTEEQGSWDAIAAETR 436
            DNTILRAH+AFMAH NGVS++ L  A  AEGG  D     DGG D K AAA+ +AR+ S     +   LV  LMR Y+P GV+EL+ T+SLV+M  RWTS+Y+P  YEPE+L FV+E+G+ALS+D   PCTEEQ  W  +AAE R
Sbjct:  107 DNTILRAHFAFMAHRNGVSVSDLANA-TAEGG--DT----DGGEDLKKAAALSMARACSGTLGPMPRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMPKQYEPEVLVFVEENGSALSLDPTKPCTEEQSGWRELAAEIR 244
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BLAST of mRNA_S-firma_F_contig1112.1486.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.530e-24
Identity = 67/146 (45.89%), Postives = 94/146 (64.38%), Query Frame = 2 
Query:    2 DNTILRAHYAFMAHSNGVSIAKL-KLAAVAEGGGGDLADGGDGGGDAKLAAAVDLARSASAAPSSVSPTLVQTLMRLYSPPGVLELLVTVSLVTMYHRWTSVYVPVAYEPEILAFVQEHGAALSIDAMSPCTEEQGSWDAIAAETR 436
            +N +LRAH+AFMA  +GV++++L ++  +   GGGD          A   AA+  A++AS  P+ ++  L   + RL+SPP V+ELL+TVS+    HRWTSVYVP  YEPEI  FV+E+G AL I   SPCT +Q  W+ IAA+ R
Sbjct:  360 ENNVLRAHFAFMAMRSGVTLSRLIQVTDITSTGGGD---------SAAEDAAMAFAQAASWTPTRMTAALAGLISRLFSPPAVIELLITVSVEFAIHRWTSVYVPRRYEPEIDEFVKEYGPALGIP-HSPCTADQQKWEEIAAQKR 495
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BLAST of mRNA_S-firma_F_contig1112.1486.1 vs. uniprot
Match: A0A6H5JXG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.610e-18
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 2 
Query:    2 DNTILRAHYAFMAHSNGVSIAKLKLAAVAEGGGGDLADGGDGGGDAKLAAAVDLARSASAAPSSVSPTLVQTLMRLYSPPGVLELLVTVSLVTMYHRWTSVYVP 313
            DNTILRAH+AFMAH NGVS++ L  +A AEGG  D     DGG D K AAA+ +AR+    P  +   LV  LMR Y+P GV+EL+ T+SLV+M  RWTS+Y+P
Sbjct:  301 DNTILRAHFAFMAHRNGVSVSNL-ASATAEGG--DT----DGGEDLKKAAALSMARACGGTPGPLPRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMP 397
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BLAST of mRNA_S-firma_F_contig1112.1486.1 vs. uniprot
Match: A0A2S9YJQ3_9DELT (Uncharacterized protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9YJQ3_9DELT)

HSP 1 Score: 68.6 bits (166), Expect = 4.240e-10
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = 2 
Query:    2 DNTILRAHYAFMAHSNGVSIAKLKLAAV-AEGGGGDLADGGDGGGDAKLAAAVDLARSASAAPSSVSPTLVQTLMRLYSPPGVLELLVTVSLVTMYHRWTSVYVPVAYEPEILAFVQEHGAALSIDAMSPCTEEQGSWDAIAAETR 436
            +N +L AH+A+ A   G ++ +L  A V +E  G D+A             A   A + + +P++V    V  L   +SP  ++EL+V +S+  + +R+TS Y   +YEPE+ AFV EHG AL +    PCT    SWD  AA+ R
Sbjct:  332 NNPLLAAHFAYWAVRAGATLKRLTSALVPSEDQGRDVA-------------AFMFAHAGATSPATVGAAEVAGLTSYFSPAEIIELVVALSIHGLLNRYTSTYPVDSYEPEVEAFVAEHGEALGLKPAVPCTHGT-SWDQQAAKAR 463
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BLAST of mRNA_S-firma_F_contig1112.1486.1 vs. uniprot
Match: A0A0C2CZ51_9DELT (Putative fusion protein n=2 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2CZ51_9DELT)

HSP 1 Score: 67.4 bits (163), Expect = 1.060e-9
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 2 
Query:    5 NTILRAHYAFMAHSNGVSIAKLKLAAVAEGGGGDLADGGDGGGDAKLAAAVDLARSASAAPSSVSPTLVQTLMRLYSPPGVLELLVTVSLVTMYHRWTSVYVPVAYEPEILAFVQEHGAALSIDAMSPCTEEQGSWDAIAAETR 436
            N +L AH+AF+A   G +  +L  A         L  G D G DA   AA   A  A+ +P++V+   +  L   ++P G++E++V +S+  M +R+TS Y    YEPEI AFV +HGA L ++A  P T    SWD   A+ R
Sbjct:  334 NPLLAAHFAFLAIRAGATAKRLASA---------LTPGDDEGRDA---AAFAFAHVAAISPAAVTRKEIAGLTSFFTPAGIIEIVVALSVHGMLNRYTSTYPVDNYEPEIAAFVAQHGAVLGLEAQ-PYTHGT-SWDEQCAKVR 463
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1112.1486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FMN7_ECTSI1.690e-3856.94Probable fusion protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G5G2_ECTSI2.240e-3755.86Probable fusion protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWC3_9PHAE1.530e-2445.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXG8_9PHAE3.610e-1854.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2S9YJQ3_9DELT4.240e-1034.93Uncharacterized protein n=1 Tax=Enhygromyxa salina... [more]
A0A0C2CZ51_9DELT1.060e-936.81Putative fusion protein n=2 Tax=Enhygromyxa salina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1112contigS-firma_F_contig1112:22185..24443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog391625.PPSIR1_29453
PFAMsCMD,HWE_HK
Max annot lvl2|Bacteria
Evalue8.42e-07
EggNOG OGsCOG2128@1|root,COG2128@2|Bacteria
Descriptionhydroperoxide reductase activity
COG categoryS
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_000490.1
Exons3
Model size599
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1112.1486.1prot_S-firma_F_contig1112.1486.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1112 22342..24409 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.0208075-UTR-S-firma_F_contig1112:22184..223411622815662.0208075-UTR-S-firma_F_contig1112:22184..22341Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1112 22185..22341 -
1696949486.5679328-UTR-S-firma_F_contig1112:22184..223411696949486.5679328-UTR-S-firma_F_contig1112:22184..22341Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1112 22185..22341 -
1622815662.0690982-UTR-S-firma_F_contig1112:24409..244431622815662.0690982-UTR-S-firma_F_contig1112:24409..24443Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1112 24410..24443 -
1696949486.6047754-UTR-S-firma_F_contig1112:24409..244431696949486.6047754-UTR-S-firma_F_contig1112:24409..24443Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1112 24410..24443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.031337-CDS-S-firma_F_contig1112:22341..224651622815662.031337-CDS-S-firma_F_contig1112:22341..22465Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1112 22342..22465 -
1696949486.578802-CDS-S-firma_F_contig1112:22341..224651696949486.578802-CDS-S-firma_F_contig1112:22341..22465Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1112 22342..22465 -
1622815662.043482-CDS-S-firma_F_contig1112:23351..235241622815662.043482-CDS-S-firma_F_contig1112:23351..23524Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1112 23352..23524 -
1696949486.5886073-CDS-S-firma_F_contig1112:23351..235241696949486.5886073-CDS-S-firma_F_contig1112:23351..23524Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1112 23352..23524 -
1622815662.055042-CDS-S-firma_F_contig1112:24298..244091622815662.055042-CDS-S-firma_F_contig1112:24298..24409Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1112 24299..24409 -
1696949486.5966053-CDS-S-firma_F_contig1112:24298..244091696949486.5966053-CDS-S-firma_F_contig1112:24298..24409Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1112 24299..24409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1112.1486.1

>prot_S-firma_F_contig1112.1486.1 ID=prot_S-firma_F_contig1112.1486.1|Name=mRNA_S-firma_F_contig1112.1486.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=136bp
MAHSNGVSIAKLKLAAVAEGGGGDLADGGDGGGDAKLAAAVDLARSASAA
PSSVSPTLVQTLMRLYSPPGVLELLVTVSLVTMYHRWTSVYVPVAYEPEI
LAFVQEHGAALSIDAMSPCTEEQGSWDAIAAETRG*
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mRNA from alignment at S-firma_F_contig1112:22185..24443-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1112.1486.1 ID=mRNA_S-firma_F_contig1112.1486.1|Name=mRNA_S-firma_F_contig1112.1486.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2259bp|location=Sequence derived from alignment at S-firma_F_contig1112:22185..24443- (Sphaerotrichia firma ET2_F female)
CGACAACACGATCCTTCGCGCCCACTACGCCTTCATGGCGCATAGCAACG
GCGTGTCCATCGCCAAGCTCAAGCTGGCGGCCGTTGCCGAGGGCGGCGGT
GGCGATCTCGCGGACGGCGGAGACGGCGGGGGCGATGCAAAGCTGGTGAA
CATGCGCATGCCTCTTTTGGCTTTTGGAATAATCTTCTTGCGTCATTTGT
TATGTTCGGAGTGCTTACTACCTGTGGGTGCTTGTTTTCTCTGATCAGAA
TTGTGTGTATGTGCATAATTTGTCGTTGTGAGTGTACTACTCGGAGCATC
GTCCATTGCTTGTCTGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCACG
CCCGTGCCGTTTCTTCGCGTATTTGGTATTTGGAATTTGCAGAAAGATGG
CCGTGGCTCGACAGTAGGTCACGGTGGCACTCGCGCGCCGCGATGTTTTG
CGCGTCCCCGTGTTCGCAACATGCACTTGCTTCGGAGTTTGGAGATTTTT
GGGTTGCAAACCGCTGTCCACAAGCCGCACCAAACGGTACCCGGGTCGTA
CTTTTACCCCTGCCCCCAGGCCCCCAGTCGTGGAGATGGATAAAACAACA
GCAAAAATACGAACAGAGAGGCCCCGCAGTATCGATAGCCGTACACGAAG
TAAGCACCAAAGCTGTGCCGTGTCAAGCAGGCACCTCGTTGAAAGGGTTC
GAAAAAGCATCCCCGATTAAGTCTCCCGACAAACCAGTCACCCACCCACC
CACCCACCCACTCACCCAACCCTCTGCGGCTGATGGCATGGTAAGACTAA
ACTTGTTTTGCGGGTGGGTTCGTCTAACCCTCCCCCCTCCATCTTTCCCC
GGACGATCGCACCCGTCACCCCTTTCTGGTGTCATCGTGTGCACCCTCAT
GTGTCTCCACCCGTCGCAGGCCGCGGCGGTGGACTTGGCGCGGTCGGCCA
GCGCAGCGCCGTCCTCGGTCTCTCCGACGCTCGTGCAAACGCTCATGCGC
CTCTACTCGCCTCCCGGTGTCCTCGAGCTCCTCGTCACCGTCTCCCTGGT
CACCATGTACCACCGCTGGACCTCCGTCTACGTGCCCGTCGCGTGAGTTT
TCATCCCCGTTTGGCGCGGGGCAGAGGGGGGGGGGGGGCTTCTCTGCTTG
TTTTCTGCTGTTGTTGTTGATGCTGCCTGTGATTTGTCGTGCTTCGATCG
GCTTTGTGCCTTCGACGCAAGGAAGGTGAGTTTTGCTTTTTCGAGGCTTA
TTTTTGGGTCTACAGGTGTACGCGGATCATTGCGTCGTTGGGGCTGGCCT
ATCATACATACATACGAAGTACCCGAGAAGCTATGGCCGACGCTCTCTGT
TCTGTGGGTGTTCGTGAACGTAGGCTGCCCTTGCCGGAGTTTCTCGCAGC
TGCTCGAAGGTGACCAACCCAAGTCGAAACCGGCTCACGATAAAATTTGT
TCCACTGAGGAATGTCAGGCTGGCCTATCCCGGTGCCGTGTTTTTGATGC
CCGAGTTACGTTCATCGGAAGAGTGGGGAAATACTGGGTTGGGTGGCGTA
TTCGCCGTCTGTCAACACCGTTTTATCTACCACATAGCAGGTACAGCAGT
ATCATCTCTCGCGCGTTCTTGTTGTTGAAGCTGCTTCGTTGGTGAAGCTT
GTCGATATGTACTCTGTAGGTGTCAAGTCTTTGTTGTTCAGGTGCTCCAC
TGCTACCAGACGATCGATCTTCATGCCCCCCTGTCCATGCCGTCGCCTTC
TCTCTGTCGCTCCCTCTCGTTCCCCGCCCGGACTCCCTTCGCCTTTCTGT
CGACACCAAGCCTACTATCGTCACCCAACCCGTCACGTGCCCCCCTTCCC
CTCTTTCCCCTCGCGTCCATCTCTCTTTGCTGTTCAAACACCCAACACTT
TTTCGACCGGCAACAATCGACAAACAACCAAACTATTGAAACCGATCCCC
GGACCTACATACCCGACACCCGACGCAGGTACGAACCCGAGATATTGGCG
TTTGTCCAGGAGCACGGGGCGGCGCTTTCCATCGACGCCATGAGCCCCTG
CACGGAAGAGCAGGGTAGCTGGGACGCCATCGCCGCCGAGACTCGCGGGT
AGAAAACTTAAACTTGGCAGCAGGCCGCCGGAGTGTAGCTGCCCCTCTCG
CCGCCCCCCCACCCCCCAAAAGAGAAGGAGGCGGAGAGAGAGTTTGGTTT
GTCCAGTTCTTTTCAGTTTTGAACAGATCACACGGGGAATCTCAGAAAGA
GAACTCCAC
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Coding sequence (CDS) from alignment at S-firma_F_contig1112:22185..24443-

>mRNA_S-firma_F_contig1112.1486.1 ID=mRNA_S-firma_F_contig1112.1486.1|Name=mRNA_S-firma_F_contig1112.1486.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=816bp|location=Sequence derived from alignment at S-firma_F_contig1112:22185..24443- (Sphaerotrichia firma ET2_F female)
ATGGCGCATAGCAACGGCGTGTCCATCGCCAAGCTCAAGCTGGCGGCCGT
TGCCGAGGGCGGCGGTGGCGATCTCGCGGACGGCGGAGACGGCGGGGGCG
ATGCAAAGCTGATGGCGCATAGCAACGGCGTGTCCATCGCCAAGCTCAAG
CTGGCGGCCGTTGCCGAGGGCGGCGGTGGCGATCTCGCGGACGGCGGAGA
CGGCGGGGGCGATGCAAAGCTGGCCGCGGCGGTGGACTTGGCGCGGTCGG
CCAGCGCAGCGCCGTCCTCGGTCTCTCCGACGCTCGTGCAAACGCTCATG
CGCCTCTACTCGCCTCCCGGTGTCCTCGAGCTCCTCGTCACCGTCTCCCT
GGTCACCATGTACCACCGCTGGACCTCCGTCTACGTGCCCGTCGCGCCGC
GGCGGTGGACTTGGCGCGGTCGGCCAGCGCAGCGCCGTCCTCGGTCTCTC
CGACGCTCGTGCAAACGCTCATGCGCCTCTACTCGCCTCCCGGTGTCCTC
GAGCTCCTCGTCACCGTCTCCCTGGTCACCATGTACCACCGCTGGACCTC
CGTCTACGTGCCCGTCGCGTACGAACCCGAGATATTGGCGTTTGTCCAGG
AGCACGGGGCGGCGCTTTCCATCGACGCCATGAGCCCCTGCACGGAAGAG
CAGGGTAGCTGGGACGCCATCGCCGCCGAGACTCGCGGGTAGGTACGAAC
CCGAGATATTGGCGTTTGTCCAGGAGCACGGGGCGGCGCTTTCCATCGAC
GCCATGAGCCCCTGCACGGAAGAGCAGGGTAGCTGGGACGCCATCGCCGC
CGAGACTCGCGGGTAG
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