mRNA_S-firma_F_contig11091.1449.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig11091.1449.1 vs. uniprot
Match: A0A6H5JM44_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM44_9PHAE) HSP 1 Score: 300 bits (768), Expect = 7.460e-98 Identity = 140/179 (78.21%), Postives = 158/179 (88.27%), Query Frame = 1
Query: 1 LFRFLSKAGDEVQILTTDDKPDRPDSHLGFPITTTAGFRFVLYNQ--------IMLTFDWERKGWALIDKFRPDIMHVTSPGFLVLPSLFYARFFRIPLLFSYHTHLPLYGRTYLGWIPGVEAMSWALLRYAHNKADLTLCTSPQMEQQLTENGIERVDVWRKGIDVEVGGPVDPRSLC 513
+ +FLSKAGDEV+ILTTDDK +RP+SHL FPITTT+GFRF+LYNQ IMLTFDWERKGWA+ID+ +PDI+HVTSPGFLVLPSLFYARFFR+P+LFSYHTHLPLYGRTYLGWIPG+EAMSWA+LRYAHNKADLTLCTSPQM+QQL NGIERVDVWRKGIDVE +P+ C
Sbjct: 59 MLKFLSKAGDEVEILTTDDKDERPESHLDFPITTTSGFRFILYNQACATLNVVIMLTFDWERKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLEANGIERVDVWRKGIDVE---RFNPKFAC 234
BLAST of mRNA_S-firma_F_contig11091.1449.1 vs. uniprot
Match: A0A7S2XXM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXM0_9STRA) HSP 1 Score: 220 bits (560), Expect = 2.290e-67 Identity = 101/164 (61.59%), Postives = 125/164 (76.22%), Query Frame = 1
Query: 1 LFRFLSKAGDEVQILTTDDKPDRPDSHLGFPITTTAGFRFVLYNQIMLTFDWERKGWALIDKFRPDIMHVTSPGFLVLPSLFYARFFRIPLLFSYHTHLPLYGRTYLGWIPGVEAMSWALLRYAHNKADLTLCTSPQMEQQLTENGIERVDVWRKGIDVEVGGP 492
+ +FL KAGDEV I+TTDD D P HLG+ I T GFRF LYNQI+LTFD E KG +I K +PD++H TSPGF+ +L YAR FRIPLL SYHTHLP+Y R YL ++PG +WA+LR HN+ADLTL TSPQM+++LTE+G++RV+VWRKGID EV P
Sbjct: 111 MLKFLKKAGDEVSIVTTDDVKDAPTKHLGYEIQNTKGFRFPLYNQIVLTFDLELKGMQMIRKLKPDVIHCTSPGFITFAALIYARMFRIPLLMSYHTHLPIYARDYLWFLPGSVHWAWAMLRLVHNRADLTLVTSPQMKEELTEHGVQRVEVWRKGIDTEVFDP 274
BLAST of mRNA_S-firma_F_contig11091.1449.1 vs. uniprot
Match: A0A835ZJ95_9STRA (Glycosyl transferase, group 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ95_9STRA) HSP 1 Score: 211 bits (538), Expect = 1.140e-63 Identity = 93/164 (56.71%), Postives = 121/164 (73.78%), Query Frame = 1
Query: 1 LFRFLSKAGDEVQILTTDDKPDRPDSHLGFPITTTAGFRFVLYNQIMLTFDWERKGWALIDKFRPDIMHVTSPGFLVLPSLFYARFFRIPLLFSYHTHLPLYGRTYLGWIPGVEAMSWALLRYAHNKADLTLCTSPQMEQQLTENGIERVDVWRKGIDVEVGGP 492
+ +++ KAGD I+TTDD PD P S LG+PI T GFR +Y I+LTFD E GW++I+K +PD++HVTSPGF+ +L YAR FR+PL+FSYHTHLP+Y +TY W P +E +++ LLR+ HN+ADLTL TSPQM+ L G+ERVDVWRKGID E P
Sbjct: 53 MLKYIHKAGDSAAIVTTDDSPDAPSSFLGYPIANTKGFRCPVYKHIVLTFDTELVGWSVIEKLKPDVLHVTSPGFINFAALLYARIFRVPLVFSYHTHLPVYAKTYWEWFPRIEELAYFLLRFVHNRADLTLVTSPQMKDVLESQGVERVDVWRKGIDTERFNP 216
BLAST of mRNA_S-firma_F_contig11091.1449.1 vs. uniprot
Match: A0A448ZIH1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZIH1_9STRA) HSP 1 Score: 210 bits (534), Expect = 9.360e-63 Identity = 103/168 (61.31%), Postives = 124/168 (73.81%), Query Frame = 1
Query: 1 LFRFLSKAGDEVQILTTDDKP---DRPDSHLGFPITTTAGFRFVLYNQIMLTFDW-ERKGWALIDKFRPDIMHVTSPGFLVLPSLFYARFFRIPLLFSYHTHLPLYGRTYLGWIPGVEAMSWALLRYAHNKADLTLCTSPQMEQQLTENGIERVDVWRKGIDVEVGGP 492
+ +FLSKAGDEV+ILT D K D P GF I T GF F LYNQI LT D E KG +++DKF+PD++HVTSPGF+VL ++FY+R IPL+ SYHTHLP YG YLG+IPG+E W LLR+AHN+ADLTL TSPQ++ +L ENGI RVDVWRKGID E P
Sbjct: 86 MLKFLSKAGDEVEILTVDSKTPKKDLPKESFGFKIEHTLGFTFPLYNQISLTLDLPEMKGSSMLDKFKPDLIHVTSPGFMVLAAIFYSRTMCIPLVMSYHTHLPAYGANYLGFIPGIEEFXWKLLRFAHNRADLTLVTSPQIKNELLENGISRVDVWRKGIDTERFNP 253
BLAST of mRNA_S-firma_F_contig11091.1449.1 vs. uniprot
Match: A0A6T5MMG1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MMG1_HETAK) HSP 1 Score: 209 bits (532), Expect = 9.090e-62 Identity = 95/162 (58.64%), Postives = 122/162 (75.31%), Query Frame = 1
Query: 7 RFLSKAGDEVQILTTDDKPDRPDSHLGFPITTTAGFRFVLYNQIMLTFDWERKGWALIDKFRPDIMHVTSPGFLVLPSLFYARFFRIPLLFSYHTHLPLYGRTYLGWIPGVEAMSWALLRYAHNKADLTLCTSPQMEQQLTENGIERVDVWRKGIDVEVGGP 492
++L+KAGD V+ILTTDD PD P+S LGFPI T GFRF LYNQI+L+ D E KG ++ + RPD++HVT PGF+ L +L YAR F++PL+FSYHTHLP Y YLGW+PG+E +W LR+ N+ADLTL TS M QL E+G+ R++VWRKGID +V P
Sbjct: 113 KYLAKAGDNVEILTTDDVPDAPESFLGFPINYTKGFRFPLYNQIVLSADHEGKGKEMLGRRRPDLLHVTCPGFITLAALVYARMFKLPLVFSYHTHLPHYAIQYLGWVPGIEDAAWTALRFVLNRADLTLVTSGPMRDQLAEHGVRRLEVWRKGIDTDVFNP 274
BLAST of mRNA_S-firma_F_contig11091.1449.1 vs. uniprot
Match: K0SPG6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SPG6_THAOC) HSP 1 Score: 205 bits (522), Expect = 3.890e-61 Identity = 100/162 (61.73%), Postives = 120/162 (74.07%), Query Frame = 1
Query: 1 LFRFLSKAGDEVQILTTDDKPDR---PDSHLGFPITTTAGFRFVLYNQIMLTFDW-ERKGWALIDKFRPDIMHVTSPGFLVLPSLFYARFFRIPLLFSYHTHLPLYGRTYLGWIPGVEAMSWALLRYAHNKADLTLCTSPQMEQQLTENGIERVDVWRKGID 474
+ R+LSKAGD V ILT D K + P+ G+ I T GF F LY+ I LTFD E KG ++++ RPD++HVTSPGF+V LFYAR RIPLL SYHTHLPLYGR Y GW PGVE SWALLR+AH +ADLTL TSPQM++++ ENGI RV+VWRKGID
Sbjct: 85 MLRYLSKAGDNVDILTVDAKTPKDELPEESFGYKIEHTQGFVFPLYDHISLTFDLPEMKGAKMMERRRPDLIHVTSPGFMVFAGLFYARVMRIPLLLSYHTHLPLYGRNYCGWFPGVEEFSWALLRFAHTRADLTLVTSPQMKEEMEENGIPRVEVWRKGID 246
BLAST of mRNA_S-firma_F_contig11091.1449.1 vs. uniprot
Match: A0A1E7FD46_9STRA (Putative glycosyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD46_9STRA) HSP 1 Score: 200 bits (509), Expect = 1.500e-59 Identity = 98/168 (58.33%), Postives = 122/168 (72.62%), Query Frame = 1
Query: 1 LFRFLSKAGDEVQILTTDDKP---DRPDSHLGFPITTTAGFRFVLYNQIMLTFDW-ERKGWALIDKFRPDIMHVTSPGFLVLPSLFYARFFRIPLLFSYHTHLPLYGRTYLGWIPGVEAMSWALLRYAHNKADLTLCTSPQMEQQLTENGIERVDVWRKGIDVEVGGP 492
+ +FLSKAGD+V++LT D K + P G+ I T GF F LYNQI LT D E KG ++DK +PD++HVTSPGF+VL ++FYAR IPL+ SYHTHLP YGR YL +IPG+E SW LLR+AH +ADLTL TSP ++++L ENGI RVDVWRKGID E P
Sbjct: 44 MLKFLSKAGDDVEVLTCDTKTPYQELPKESFGYKIHHTLGFTFPLYNQISLTLDLPEMKGAQIMDKLKPDLIHVTSPGFMVLAAIFYARTMCIPLVMSYHTHLPAYGRNYLSFIPGIEKFSWELLRFAHTRADLTLVTSPPLQKELLENGIPRVDVWRKGIDTERFNP 211
BLAST of mRNA_S-firma_F_contig11091.1449.1 vs. uniprot
Match: A0A7S2B5V3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B5V3_9STRA) HSP 1 Score: 200 bits (509), Expect = 2.540e-59 Identity = 88/164 (53.66%), Postives = 126/164 (76.83%), Query Frame = 1
Query: 1 LFRFLSKAGDEVQILTTDDKPDRPDSHLGFPITTTAGFRFVLYNQIMLTFDWERKGWALIDKFRPDIMHVTSPGFLVLPSLFYARFFRIPLLFSYHTHLPLYGRTYLGWIPGVEAMSWALLRYAHNKADLTLCTSPQMEQQLTENGIERVDVWRKGIDVEVGGP 492
+ ++++KAG+ V+I+T DD P+ P S G+PI T GFRFVLYN+I LTFD +++ A++ +F+PDI+HVTSPGFLV + AR ++PL+FSYHTHLP+Y + Y +PG++ +W +L++ HN+ADL L TSPQM+++L NGIERV+VWRKGIDV+V P
Sbjct: 71 MLKYMAKAGENVEIITVDDTPEAPASKFGYPINTIKGFRFVLYNEIALTFDLKQRTLAVMRRFKPDILHVTSPGFLVFVGVLTARILKVPLVFSYHTHLPVYAKQYFP-VPGIDNAAWKILKFVHNRADLNLVTSPQMKEELEANGIERVEVWRKGIDVDVFQP 233
BLAST of mRNA_S-firma_F_contig11091.1449.1 vs. uniprot
Match: B8CGB9_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CGB9_THAPS) HSP 1 Score: 197 bits (500), Expect = 4.470e-59 Identity = 95/162 (58.64%), Postives = 119/162 (73.46%), Query Frame = 1
Query: 1 LFRFLSKAGDEVQILTTDDKPDR---PDSHLGFPITTTAGFRFVLYNQIMLTFDW-ERKGWALIDKFRPDIMHVTSPGFLVLPSLFYARFFRIPLLFSYHTHLPLYGRTYLGWIPGVEAMSWALLRYAHNKADLTLCTSPQMEQQLTENGIERVDVWRKGID 474
+ R+LSKAGD V ILT D K + P G+ I T GF F LYN I LT D E KG ++++ RPD++HVTSPGF++ LFYAR RIPLL SYHTHLPLYGR YLG+IPG+E SW L+R+AH++ADLTL TSPQM++++ NG+ RV+VWRKGID
Sbjct: 20 MLRYLSKAGDNVDILTVDSKTPKEELPKEAFGYSIEHTQGFVFPLYNHISLTVDLPEMKGAKMMERRRPDLIHVTSPGFMLYAGLFYARVMRIPLLLSYHTHLPLYGRNYLGFIPGIEEFSWGLIRFAHSRADLTLVTSPQMKEEMEANGVPRVEVWRKGID 181
BLAST of mRNA_S-firma_F_contig11091.1449.1 vs. uniprot
Match: L1JFZ8_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JFZ8_GUITC) HSP 1 Score: 195 bits (496), Expect = 5.580e-59 Identity = 86/164 (52.44%), Postives = 122/164 (74.39%), Query Frame = 1
Query: 1 LFRFLSKAGDEVQILTTDDKPDRPDSHLGFPITTTAGFRFVLYNQIMLTFDWERKGWALIDKFRPDIMHVTSPGFLVLPSLFYARFFRIPLLFSYHTHLPLYGRTYLGWIPGVEAMSWALLRYAHNKADLTLCTSPQMEQQLTENGIERVDVWRKGIDVEVGGP 492
+ R++ KA D+++I+T DD D P+S LG+PIT T GFRF LYN I L+ D G +I++F+P+++HVT+PGF+ L S YAR+F+IPL+ SYHTHLP+Y YLG++P + +SW ++ HN+ADLTL TSPQ++++ E+GIERV+VWRKGID E P
Sbjct: 20 MLRYMQKAEDQIEIVTPDDSQDPPESFLGYPITYTPGFRFSLYNLICLSLDQNLVGMKMIERFKPEVLHVTTPGFICLMSSIYARWFQIPLVLSYHTHLPVYAANYLGFVPFIVDISWLTIKLIHNQADLTLVTSPQLKEEFLEHGIERVEVWRKGIDTESFNP 183 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11091.1449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig11091.1449.1 >prot_S-firma_F_contig11091.1449.1 ID=prot_S-firma_F_contig11091.1449.1|Name=mRNA_S-firma_F_contig11091.1449.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=172bp LFRFLSKAGDEVQILTTDDKPDRPDSHLGFPITTTAGFRFVLYNQIMLTFback to top mRNA from alignment at S-firma_F_contig11091:3333..4425+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig11091.1449.1 ID=mRNA_S-firma_F_contig11091.1449.1|Name=mRNA_S-firma_F_contig11091.1449.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1093bp|location=Sequence derived from alignment at S-firma_F_contig11091:3333..4425+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig11091:3333..4425+ >mRNA_S-firma_F_contig11091.1449.1 ID=mRNA_S-firma_F_contig11091.1449.1|Name=mRNA_S-firma_F_contig11091.1449.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1032bp|location=Sequence derived from alignment at S-firma_F_contig11091:3333..4425+ (Sphaerotrichia firma ET2_F female)back to top |