mRNA_S-firma_F_contig11088.1444.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11088.1444.1
Unique NamemRNA_S-firma_F_contig11088.1444.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11088.1444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11088contigS-firma_F_contig11088:3999..4494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size496
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.525596-CDS-S-firma_F_contig11088:3998..43521622815657.525596-CDS-S-firma_F_contig11088:3998..4352Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11088 3999..4352 +
1696949483.3695607-CDS-S-firma_F_contig11088:3998..43521696949483.3695607-CDS-S-firma_F_contig11088:3998..4352Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11088 3999..4352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.537802-UTR-S-firma_F_contig11088:4352..44941622815657.537802-UTR-S-firma_F_contig11088:4352..4494Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11088 4353..4494 +
1696949483.3780062-UTR-S-firma_F_contig11088:4352..44941696949483.3780062-UTR-S-firma_F_contig11088:4352..4494Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11088 4353..4494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11088.1444.1prot_S-firma_F_contig11088.1444.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11088 3999..4352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11088.1444.1

>prot_S-firma_F_contig11088.1444.1 ID=prot_S-firma_F_contig11088.1444.1|Name=mRNA_S-firma_F_contig11088.1444.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=118bp
ALCAQEQRVPAPRCIYHFYTCKSSVLQEVRECREVTHLSCAWTTYGSRRT
DSRDRHAASRELALLRVARRAYLDAGSRSLLFSAERLACNLRAVFMAEEM
SIKIQFPAKFDQMFDKH*
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mRNA from alignment at S-firma_F_contig11088:3999..4494+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11088.1444.1 ID=mRNA_S-firma_F_contig11088.1444.1|Name=mRNA_S-firma_F_contig11088.1444.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=496bp|location=Sequence derived from alignment at S-firma_F_contig11088:3999..4494+ (Sphaerotrichia firma ET2_F female)
GCGCTTTGTGCTCAAGAACAACGGGTTCCAGCGCCACGGTGCATCTATCA
TTTCTACACCTGCAAGTCGAGCGTGCTACAAGAGGTGAGGGAGTGCAGAG
AGGTCACGCATTTGTCGTGTGCATGGACTACATATGGCTCACGGCGGACG
GATTCGCGAGACAGGCATGCTGCTTCCCGAGAGCTAGCTCTCCTGCGCGT
GGCCAGACGGGCTTATTTGGATGCGGGCTCACGCTCTCTTTTATTTTCCG
CTGAACGTTTGGCGTGCAACCTCCGCGCGGTGTTTATGGCGGAGGAAATG
TCCATAAAAATTCAATTTCCGGCCAAATTCGATCAAATGTTTGACAAACA
TTAACATTTGATCATCTGGCAGCTAGCAAAAATGTTTGGAGGTGGCGGCG
CGATTTTTTGTCTTGCACACTCCAGTTGTCAACGCCAACAACTGCGCCCT
CAATACCGAACCCAACGAGTTTTTAAGCTGCTCCGGACAACCCTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig11088:3999..4494+

>mRNA_S-firma_F_contig11088.1444.1 ID=mRNA_S-firma_F_contig11088.1444.1|Name=mRNA_S-firma_F_contig11088.1444.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=708bp|location=Sequence derived from alignment at S-firma_F_contig11088:3999..4494+ (Sphaerotrichia firma ET2_F female)
GCGCTTTGTGCTCAAGAACAACGGGTTCCAGCGCCACGGTGCATCTATCA
TTTCTACACCTGCAAGTCGAGCGTGCTACAAGAGGTGAGGGAGTGCAGAG
AGGTCACGCATTTGTCGTGTGCATGGACTACATATGGCTCACGGCGGACG
GATTCGCGAGACAGGCATGCTGCTTCCCGAGAGCTAGCTCTCCTGCGCGT
GGCCAGACGGGCTTATTTGGATGCGGGCTCACGCTCTCTTTTATTTTCCG
CTGAACGTTTGGCGTGCAACCTCCGCGCGGTGTTTATGGCGGAGGAAATG
TCCATAAAAATTCAATTTCCGGCCAAATTCGATCAAATGTTTGACAAACA
TTAAGCGCTTTGTGCTCAAGAACAACGGGTTCCAGCGCCACGGTGCATCT
ATCATTTCTACACCTGCAAGTCGAGCGTGCTACAAGAGGTGAGGGAGTGC
AGAGAGGTCACGCATTTGTCGTGTGCATGGACTACATATGGCTCACGGCG
GACGGATTCGCGAGACAGGCATGCTGCTTCCCGAGAGCTAGCTCTCCTGC
GCGTGGCCAGACGGGCTTATTTGGATGCGGGCTCACGCTCTCTTTTATTT
TCCGCTGAACGTTTGGCGTGCAACCTCCGCGCGGTGTTTATGGCGGAGGA
AATGTCCATAAAAATTCAATTTCCGGCCAAATTCGATCAAATGTTTGACA
AACATTAA
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