mRNA_S-firma_F_contig11084.1438.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11084.1438.1
Unique NamemRNA_S-firma_F_contig11084.1438.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11084.1438.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.710e-62
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:    5 VLSMAGEAALFWEVESRLWLLLGPFGSVGGMELDEEEAASRMHVCRGLSGLHLLPALTRNLGILLTARALRKLQENGVVNRIKFSHVDHRTGGPAAVGCARFKGLGEEAAAVKRRLRDKC 364
            VLSMAGEA LFWEVESRLWLLLGPFG+VGG+ELDEEEA S +H+CRGLSGLHLLPALTRNLGILLTARA+RKLQE+GVV+RIK SHVDHRTGGPAAVG ARFKGLGEEAAAVKRRLRDKC
Sbjct: 1031 VLSMAGEAGLFWEVESRLWLLLGPFGAVGGLELDEEEARSSVHLCRGLSGLHLLPALTRNLGILLTARAIRKLQESGVVSRIKLSHVDHRTGGPAAVGPARFKGLGEEAAAVKRRLRDKC 1150
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11084.1438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS90_ECTSI1.710e-6290.00eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11084contigS-firma_F_contig11084:2433..3665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size368
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11084.1438.1prot_S-firma_F_contig11084.1438.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11084 2433..3663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.069083-CDS-S-firma_F_contig11084:2432..24751622815657.069083-CDS-S-firma_F_contig11084:2432..2475Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11084 2433..2475 +
1696949483.1117876-CDS-S-firma_F_contig11084:2432..24751696949483.1117876-CDS-S-firma_F_contig11084:2432..2475Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11084 2433..2475 +
1622815657.081203-CDS-S-firma_F_contig11084:2973..31761622815657.081203-CDS-S-firma_F_contig11084:2973..3176Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11084 2974..3176 +
1696949483.1200302-CDS-S-firma_F_contig11084:2973..31761696949483.1200302-CDS-S-firma_F_contig11084:2973..3176Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11084 2974..3176 +
1622815657.0907054-CDS-S-firma_F_contig11084:3543..36631622815657.0907054-CDS-S-firma_F_contig11084:3543..3663Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11084 3544..3663 +
1696949483.128889-CDS-S-firma_F_contig11084:3543..36631696949483.128889-CDS-S-firma_F_contig11084:3543..3663Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11084 3544..3663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11084.1438.1

>prot_S-firma_F_contig11084.1438.1 ID=prot_S-firma_F_contig11084.1438.1|Name=mRNA_S-firma_F_contig11084.1438.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=122bp
GGLVHGGRGRLVLGGRVPPVAPPRPVRVGGGHGAGRGGGGVPHARVPGAV
RAAPAAGPHQEPRDPAHGQGAAEAAGERRGEQDQVLPRGPPHGGPRRRRL
RPLQGPRRRGRGREAPPPGQVP
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mRNA from alignment at S-firma_F_contig11084:2433..3665+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11084.1438.1 ID=mRNA_S-firma_F_contig11084.1438.1|Name=mRNA_S-firma_F_contig11084.1438.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1233bp|location=Sequence derived from alignment at S-firma_F_contig11084:2433..3665+ (Sphaerotrichia firma ET2_F female)
GGGGGTCTTGTCCATGGCGGGCGAGGCCGCCTTGTTTTGGGAGGTGAGGT
TGAGGGGGGAAGGAAGCCAGTCAGTCGTGTTAGTTTCGTGGTGTATGGTA
CGCGTTCAAGGAAGGCAGGCGAGAGGCGGGAGGTCGGAGGGAGTCGGCCA
GCGGAGGGGGAGGAGTGCTGGCGGCGGAAAAAGAGGCATCCGGGGTTTGA
TGGGCTTAATTGGTTAGGTTTCGAGCTGTGGTTTTGGCTTCTCCTGGTCG
TTGATGTAGACAATGCGGGGGCGGGGGGTGTCTGTCGTTTGAAGAGGCGT
GGGACGGTCGGAGAGAGAGGGTGGGGTGGGGGGGGGTGGTTCGAGGAGGG
CCGTGCTGCACCACCGTGCCCCCCGCGTGAATAGCAAGAAAAGCGTCCGG
CACCAAAACCCGCGGGGAGGTCCTGCGACTGGTACTTGGCGCTTCGCGTG
ACGTGCTTCCCGGTCGGTACTAAACGTGTCCATCACTACTACCCGCAACG
CCTGTGTTTTTTTTTGTTTTTTTAACACTCTCTTTGCGCAGGTCGAGTCC
CGCCTGTGGCTCCTCCTAGGCCCGTTCGGGTCGGTGGGGGGCATGGAGCT
GGACGAGGAGGAGGCGGCGTCCCGCATGCACGTGTGCCGGGGGCTGTCCG
GGCTGCACCTGCTGCCGGCCCTCACCAGGAACCTCGGGATCCTGCTCACG
GCCAGGGCGCTGCGGAAGCTGCAGGAGAACGGCGTGGTGAACAGGCACGT
GGTAGTCAAACTACAGTGGTAGTGCGCTGTAATGCCTGCGTCTTGTTGGT
CGTGCTGCTTTCTTTTTTGTTTGTCTTGCCTTTTTTTGTTTGTCTGCCGG
TAACTTAGACTGGTGTGGGTGAGCACGCGAAAAACCACCGTTTGGGCCGC
TGCATTTATTTATTTATTTTTGGGCCCCGTTTTTCGTTGTTCCGTCCTCT
TCCTCCGCTCCAGTTTTCCGCTCTCCCTCCCTCGTGCTTTCTGACGCCGC
CCCCTCTTGCTCTTTTGCCCACGACAACAACACCCACCCACCCACACACC
CACACTCACCCACACACACCCACACACACCCACGCAAATCCACGCAAACC
CAAAAAAACAGGATCAAGTTCTCCCACGTGGACCACCGCACGGGGGGCCC
CGCCGCCGTCGGCTGCGCCCGCTTCAAGGGCCTCGGCGAAGAGGCCGCGG
CCGTGAAGCGCCGCCTCCGGGACAAGTGCCGCC
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Coding sequence (CDS) from alignment at S-firma_F_contig11084:2433..3665+

>mRNA_S-firma_F_contig11084.1438.1 ID=mRNA_S-firma_F_contig11084.1438.1|Name=mRNA_S-firma_F_contig11084.1438.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=732bp|location=Sequence derived from alignment at S-firma_F_contig11084:2433..3665+ (Sphaerotrichia firma ET2_F female)
GGGGGTCTTGTCCATGGCGGGCGAGGCCGCCTTGTTTTGGGAGGGGGGTC
TTGTCCATGGCGGGCGAGGCCGCCTTGTTTTGGGAGGTCGAGTCCCGCCT
GTGGCTCCTCCTAGGCCCGTTCGGGTCGGTGGGGGGCATGGAGCTGGACG
AGGAGGAGGCGGCGTCCCGCATGCACGTGTGCCGGGGGCTGTCCGGGCTG
CACCTGCTGCCGGCCCTCACCAGGAACCTCGGGATCCTGCTCACGGCCAG
GGCGCTGCGGAAGCTGCAGGAGAACGGCGTGGTGAACAGGTCGAGTCCCG
CCTGTGGCTCCTCCTAGGCCCGTTCGGGTCGGTGGGGGGCATGGAGCTGG
ACGAGGAGGAGGCGGCGTCCCGCATGCACGTGTGCCGGGGGCTGTCCGGG
CTGCACCTGCTGCCGGCCCTCACCAGGAACCTCGGGATCCTGCTCACGGC
CAGGGCGCTGCGGAAGCTGCAGGAGAACGGCGTGGTGAACAGGATCAAGT
TCTCCCACGTGGACCACCGCACGGGGGGCCCCGCCGCCGTCGGCTGCGCC
CGCTTCAAGGGCCTCGGCGAAGAGGCCGCGGCCGTGAAGCGCCGCCTCCG
GGACAAGTGCCGGATCAAGTTCTCCCACGTGGACCACCGCACGGGGGGCC
CCGCCGCCGTCGGCTGCGCCCGCTTCAAGGGCCTCGGCGAAGAGGCCGCG
GCCGTGAAGCGCCGCCTCCGGGACAAGTGCCG
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