mRNA_S-firma_F_contig1108.1434.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1108.1434.1
Unique NamemRNA_S-firma_F_contig1108.1434.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1108.1434.1 vs. uniprot
Match: A0A6H5JCJ7_9PHAE (GFS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 9.960e-11
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = -3 
Query:  359 YGKGDNFSIDNGHVLPGLIHKCYKAKQV 442
            YGKGDNFSIDNGHVLPGLIHKCYKAKQ 
Sbjct:  113 YGKGDNFSIDNGHVLPGLIHKCYKAKQA 140
[Close]
BLAST of mRNA_S-firma_F_contig1108.1434.1 vs. uniprot
Match: A0A2I6RJN1_SACJA (GDP-L-fucose synthase n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A2I6RJN1_SACJA)

HSP 1 Score: 67.0 bits (162), Expect = 2.760e-10
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = -3 
Query:  359 YGKGDNFSIDNGHVLPGLIHKCYKAKQV 442
            YGKGDNFSIDNGHVLPGLIHKCYKAKQ 
Sbjct:  180 YGKGDNFSIDNGHVLPGLIHKCYKAKQA 207
[Close]
BLAST of mRNA_S-firma_F_contig1108.1434.1 vs. uniprot
Match: A0A1E7EWI6_9STRA (GDP-L-fucose synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EWI6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.100e-7
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = -3 
Query:  362 YGKGDNFSIDNGHVLPGLIHKCYKAKQ 442
            YGK DNFSI+ GHV+PGLIHKCYKAKQ
Sbjct:  181 YGKSDNFSIETGHVIPGLIHKCYKAKQ 207
[Close]
BLAST of mRNA_S-firma_F_contig1108.1434.1 vs. uniprot
Match: A0A813M5B0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813M5B0_POLGL)

HSP 1 Score: 57.8 bits (138), Expect = 2.510e-7
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = -3 
Query:  359 YGKGDNFSIDNGHVLPGLIHKCYKAKQV 442
            YG  DNF+ID+GHV+PGLIHKCYKAKQ 
Sbjct:   63 YGPHDNFNIDDGHVIPGLIHKCYKAKQA 90
[Close]
BLAST of mRNA_S-firma_F_contig1108.1434.1 vs. uniprot
Match: B8CFU3_THAPS (GDP-L-fucose synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFU3_THAPS)

HSP 1 Score: 58.2 bits (139), Expect = 3.790e-7
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = -3 
Query:  362 YGKGDNFSIDNGHVLPGLIHKCYKAKQ 442
            YG  DNFSI+NGHV+PGLIHKCYKAK+
Sbjct:  177 YGPNDNFSIENGHVIPGLIHKCYKAKK 203
[Close]
BLAST of mRNA_S-firma_F_contig1108.1434.1 vs. uniprot
Match: A0A448Z624_9STRA (GDP-L-fucose synthase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z624_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.670e-7
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = -3 
Query:  365 YGKGDNFSIDNGHVLPGLIHKCYKAK 442
            YGK DNFSI+ GHV+PGLIHKCYKAK
Sbjct:  178 YGKHDNFSIEKGHVIPGLIHKCYKAK 203
[Close]
BLAST of mRNA_S-firma_F_contig1108.1434.1 vs. uniprot
Match: A0A7S2P233_9STRA (GDP-L-fucose synthase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P233_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.460e-6
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  362 YGKGDNFSIDNGHVLPGLIHKCYKAKQ 442
            YG  DNFSI+NGHV+PGLIHKCY AK+
Sbjct:  194 YGPSDNFSIENGHVIPGLIHKCYLAKK 220
[Close]
BLAST of mRNA_S-firma_F_contig1108.1434.1 vs. uniprot
Match: A0A7S2E151_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E151_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.040e-6
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = -3 
Query:  362 YGKGDNFSIDNGHVLPGLIHKCYKAKQ 442
            YG  DNFSI NGHV+PGLIHKCY AK+
Sbjct:   82 YGPHDNFSIQNGHVIPGLIHKCYNAKK 108
[Close]
BLAST of mRNA_S-firma_F_contig1108.1434.1 vs. uniprot
Match: K0TE26_THAOC (Epimerase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TE26_THAOC)

HSP 1 Score: 54.7 bits (130), Expect = 4.760e-6
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = -3 
Query:  362 YGKGDNFSIDNGHVLPGLIHKCYKAKQ 442
            YG  DNFSI NGHV+PGLIHKCY AK+
Sbjct:   77 YGPHDNFSIQNGHVIPGLIHKCYNAKR 103
[Close]
BLAST of mRNA_S-firma_F_contig1108.1434.1 vs. uniprot
Match: A0A833SLD9_PHYIN (NAD dependent epimerase/dehydratase family n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SLD9_PHYIN)

HSP 1 Score: 54.7 bits (130), Expect = 5.010e-6
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  362 YGKGDNFSIDNGHVLPGLIHKCYKAKQ 442
            YG  DNF+IDNGHV+PGLIHKCY AK+
Sbjct:  163 YGPHDNFNIDNGHVVPGLIHKCYLAKR 189
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1108.1434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCJ7_9PHAE9.960e-1196.43GFS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A2I6RJN1_SACJA2.760e-1096.43GDP-L-fucose synthase n=3 Tax=Phaeophyceae TaxID=2... [more]
A0A1E7EWI6_9STRA1.100e-785.19GDP-L-fucose synthase n=1 Tax=Fragilariopsis cylin... [more]
A0A813M5B0_POLGL2.510e-778.57Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
B8CFU3_THAPS3.790e-781.48GDP-L-fucose synthase n=1 Tax=Thalassiosira pseudo... [more]
A0A448Z624_9STRA9.670e-784.62GDP-L-fucose synthase n=1 Tax=Pseudo-nitzschia mul... [more]
A0A7S2P233_9STRA3.460e-677.78GDP-L-fucose synthase n=1 Tax=Leptocylindrus danic... [more]
A0A7S2E151_9STRA4.040e-677.78Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K0TE26_THAOC4.760e-677.78Epimerase domain-containing protein n=1 Tax=Thalas... [more]
A0A833SLD9_PHYIN5.010e-677.78NAD dependent epimerase/dehydratase family n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1108contigS-firma_F_contig1108:19202..19645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1108.1434.1prot_S-firma_F_contig1108.1434.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1108 19274..19591 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.4781168-UTR-S-firma_F_contig1108:19201..192731622815656.4781168-UTR-S-firma_F_contig1108:19201..19273Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1108 19202..19273 +
1696949482.6883893-UTR-S-firma_F_contig1108:19201..192731696949482.6883893-UTR-S-firma_F_contig1108:19201..19273Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1108 19202..19273 +
1622815656.511041-UTR-S-firma_F_contig1108:19591..196451622815656.511041-UTR-S-firma_F_contig1108:19591..19645Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1108 19592..19645 +
1696949482.7066476-UTR-S-firma_F_contig1108:19591..196451696949482.7066476-UTR-S-firma_F_contig1108:19591..19645Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1108 19592..19645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.4930043-CDS-S-firma_F_contig1108:19273..195911622815656.4930043-CDS-S-firma_F_contig1108:19273..19591Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1108 19274..19591 +
1696949482.697611-CDS-S-firma_F_contig1108:19273..195911696949482.697611-CDS-S-firma_F_contig1108:19273..19591Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1108 19274..19591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1108.1434.1

>prot_S-firma_F_contig1108.1434.1 ID=prot_S-firma_F_contig1108.1434.1|Name=mRNA_S-firma_F_contig1108.1434.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=106bp
MKTNAHVRVRRRARSTIDNLAKIHLNYSRSTHHRHMDRLPEVRVAVRRCP
PTKTLPPRHRSPKQHRSKETKLRRFFNSTEREISRLLSLASPFSRGPASP
CSTYG*
back to top

mRNA from alignment at S-firma_F_contig1108:19202..19645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1108.1434.1 ID=mRNA_S-firma_F_contig1108.1434.1|Name=mRNA_S-firma_F_contig1108.1434.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=444bp|location=Sequence derived from alignment at S-firma_F_contig1108:19202..19645+ (Sphaerotrichia firma ET2_F female)
GGGGATCACAACATGTTGGTGAACGTTACACGCGGAAGGCCGCAAAGTTG
AAGGGTAACTTGAGCAAAAAATATGAAAACGAACGCGCATGTTCGCGTGA
GACGCAGAGCGCGTTCGACGATCGATAATCTAGCGAAAATACACCTAAAT
TACAGCCGGAGTACACACCACCGACACATGGACAGGCTGCCTGAGGTACG
AGTTGCGGTGCGGCGCTGCCCACCCACGAAAACATTGCCTCCGAGACATC
GTTCACCAAAACAGCACCGATCAAAGGAGACGAAACTTCGCAGGTTTTTC
AACTCCACGGAAAGGGAAATCAGTCGGCTTTTGTCTCTCGCCAGTCCTTT
TTCCCGCGGACCTGCTTCGCCTTGTAGCACTTATGGATGAGCCCCGGGAG
CACGTGGCCGTTGTCGATGGAGAAGTTGTCCCCCTTGCCGTAGA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1108:19202..19645+

>mRNA_S-firma_F_contig1108.1434.1 ID=mRNA_S-firma_F_contig1108.1434.1|Name=mRNA_S-firma_F_contig1108.1434.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=636bp|location=Sequence derived from alignment at S-firma_F_contig1108:19202..19645+ (Sphaerotrichia firma ET2_F female)
ATGAAAACGAACGCGCATGTTCGCGTGAGACGCAGAGCGCGTTCGACGAT
CGATAATCTAGCGAAAATACACCTAAATTACAGCCGGAGTACACACCACC
GACACATGGACAGGCTGCCTGAGGTACGAGTTGCGGTGCGGCGCTGCCCA
CCCACGAAAACATTGCCTCCGAGACATCGTTCACCAAAACAGCACCGATC
AAAGGAGACGAAACTTCGCAGGTTTTTCAACTCCACGGAAAGGGAAATCA
GTCGGCTTTTGTCTCTCGCCAGTCCTTTTTCCCGCGGACCTGCTTCGCCT
TGTAGCACTTATGGATGAATGAAAACGAACGCGCATGTTCGCGTGAGACG
CAGAGCGCGTTCGACGATCGATAATCTAGCGAAAATACACCTAAATTACA
GCCGGAGTACACACCACCGACACATGGACAGGCTGCCTGAGGTACGAGTT
GCGGTGCGGCGCTGCCCACCCACGAAAACATTGCCTCCGAGACATCGTTC
ACCAAAACAGCACCGATCAAAGGAGACGAAACTTCGCAGGTTTTTCAACT
CCACGGAAAGGGAAATCAGTCGGCTTTTGTCTCTCGCCAGTCCTTTTTCC
CGCGGACCTGCTTCGCCTTGTAGCACTTATGGATGA
back to top