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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 971 |
| Cds size | 843 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815651.0383966-UTR-S-firma_F_contig11028:1..106 | 1622815651.0383966-UTR-S-firma_F_contig11028:1..106 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11028 2..106 + |
| 1696949479.3338583-UTR-S-firma_F_contig11028:1..106 | 1696949479.3338583-UTR-S-firma_F_contig11028:1..106 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11028 2..106 + |
| 1622815651.0651553-UTR-S-firma_F_contig11028:949..972 | 1622815651.0651553-UTR-S-firma_F_contig11028:949..972 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11028 950..972 + |
| 1696949479.356878-UTR-S-firma_F_contig11028:949..972 | 1696949479.356878-UTR-S-firma_F_contig11028:949..972 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11028 950..972 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815651.0503924-CDS-S-firma_F_contig11028:106..949 | 1622815651.0503924-CDS-S-firma_F_contig11028:106..949 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11028 107..949 + |
| 1696949479.3457365-CDS-S-firma_F_contig11028:106..949 | 1696949479.3457365-CDS-S-firma_F_contig11028:106..949 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11028 107..949 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig11028.1378.1 >prot_S-firma_F_contig11028.1378.1 ID=prot_S-firma_F_contig11028.1378.1|Name=mRNA_S-firma_F_contig11028.1378.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=281bp
MVGNTYGDTRRRNFFLPTAHQPQDFTLLRRCRSKPQRSQTRCLPPPSFDD
TEYLRRHIPQDFSSFLLAYGPPAAGLQAAFPPSPRARGCLRIPNTAGLIW
FSDLAGAAVVASPDCGPTHHHRFRYAPGSSGYPPCLLSMLPFRRHRRHRS
GRARPFRLPKHEGNISSWVRTRYGTLLRSSSSWRTAEPQHALAASELGNT
KSPFDSPSRTPQDVCGTCPRASHEPSKTLWCTLWILHLAWKRGPTYAVSP
RSLLFSYFRPYIFFFLQHADLHESVNVPRN* back to topmRNA from alignment at S-firma_F_contig11028:2..972+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig11028.1378.1 ID=mRNA_S-firma_F_contig11028.1378.1|Name=mRNA_S-firma_F_contig11028.1378.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=971bp|location=Sequence derived from alignment at S-firma_F_contig11028:2..972+ (Sphaerotrichia firma ET2_F female)
ACACCCCCATATCTGTCACGTCCACCACTAAATCACCCCGTGGTGCGCGC
GCAGCAGTAAAATAACTACGCGACTTAGTCTTCTTGATTCCCCCGTGACC
AATTCATGGTGGGGAACACCTACGGCGACACACGCCGCAGGAATTTCTTC
CTGCCTACGGCGCACCAGCCGCAGGACTTCACGCTCTTACGACGATGTCG
TTCAAAACCGCAGCGATCACAGACTCGCTGTCTACCTCCGCCATCATTTG
ACGATACGGAATACCTACGGCGACACATACCGCAGGATTTCTCCTCGTTT
CTTCTTGCCTACGGCCCACCAGCCGCAGGGCTTCAAGCTGCTTTCCCCCC
GTCGCCACGTGCACGGGGGTGCCTGCGTATACCTAACACCGCAGGACTTA
TCTGGTTCTCGGACCTCGCAGGTGCCGCCGTCGTGGCCAGTCCTGATTGT
GGGCCAACACATCATCACCGATTCCGGTACGCCCCCGGATCCAGTGGCTA
TCCTCCTTGCCTCCTGTCCATGCTCCCTTTTCGCCGTCACCGTCGACACC
GCAGCGGCCGAGCCCGACCCTTCCGCTTGCCCAAGCACGAGGGCAACATC
TCGAGCTGGGTCCGAACAAGGTATGGGACCCTCCTCCGGTCGTCCTCGTC
ATGGCGCACGGCAGAACCACAACATGCGCTTGCAGCGTCAGAACTGGGGA
ACACAAAGTCACCATTTGATTCGCCCTCAAGAACACCGCAAGACGTCTGT
GGCACATGTCCTCGAGCATCTCATGAGCCATCAAAGACTCTCTGGTGTAC
TCTGTGGATCCTGCATCTTGCATGGAAACGCGGCCCAACTTATGCCGTTT
CACCCAGATCTTTGCTTTTCTCCTACTTTAGGCCCTATATCTTCTTCTTC
CTTCAGCACGCGGATCTTCATGAGAGTGTGAATGTTCCTCGTAACTGAGC
CTCCTGGTGCATGAGAGGGCT back to topCoding sequence (CDS) from alignment at S-firma_F_contig11028:2..972+ >mRNA_S-firma_F_contig11028.1378.1 ID=mRNA_S-firma_F_contig11028.1378.1|Name=mRNA_S-firma_F_contig11028.1378.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1686bp|location=Sequence derived from alignment at S-firma_F_contig11028:2..972+ (Sphaerotrichia firma ET2_F female)
ATGGTGGGGAACACCTACGGCGACACACGCCGCAGGAATTTCTTCCTGCC
TACGGCGCACCAGCCGCAGGACTTCACGCTCTTACGACGATGTCGTTCAA
AACCGCAGCGATCACAGACTCGCTGTCTACCTCCGCCATCATTTGACGAT
ACGGAATACCTACGGCGACACATACCGCAGGATTTCTCCTCGTTTCTTCT
TGCCTACGGCCCACCAGCCGCAGGGCTTCAAGCTGCTTTCCCCCCGTCGC
CACGTGCACGGGGGTGCCTGCGTATACCTAACACCGCAGGACTTATCTGG
TTCTCGGACCTCGCAGGTGCCGCCGTCGTGGCCAGTCCTGATTGTGGGCC
AACACATCATCACCGATTCCGGTACGCCCCCGGATCCAGTGGCTATCCTC
CTTGCCTCCTGTCCATGCTCCCTTTTCGCCGTCACCGTCGACACCGCAGC
GGCCGAGCCCGACCCTTCCGCTTGCCCAAGCACGAGGGCAACATCTCGAG
CTGGGTCCGAACAAGGTATGGGACCCTCCTCCGGTCGTCCTCGTCATGGC
GCACGGCAGAACCACAACATGCGCTTGCAGCGTCAGAACTGGGGAACACA
AAGTCACCATTTGATTCGCCCTCAAGAACACCGCAAGACGTCTGTGGCAC
ATGTCCTCGAGCATCTCATGAGCCATCAAAGACTCTCTGGTGTACTCTGT
GGATCCTGCATCTTGCATGGAAACGCGGCCCAACTTATGCCGTTTCACCC
AGATCTTTGCTTTTCTCCTACTTTAGGCCCTATATCTTCTTCTTCCTTCA
GCACGCGGATCTTCATGAGAGTGTGAATGTTCCTCGTAACTGAATGGTGG
GGAACACCTACGGCGACACACGCCGCAGGAATTTCTTCCTGCCTACGGCG
CACCAGCCGCAGGACTTCACGCTCTTACGACGATGTCGTTCAAAACCGCA
GCGATCACAGACTCGCTGTCTACCTCCGCCATCATTTGACGATACGGAAT
ACCTACGGCGACACATACCGCAGGATTTCTCCTCGTTTCTTCTTGCCTAC
GGCCCACCAGCCGCAGGGCTTCAAGCTGCTTTCCCCCCGTCGCCACGTGC
ACGGGGGTGCCTGCGTATACCTAACACCGCAGGACTTATCTGGTTCTCGG
ACCTCGCAGGTGCCGCCGTCGTGGCCAGTCCTGATTGTGGGCCAACACAT
CATCACCGATTCCGGTACGCCCCCGGATCCAGTGGCTATCCTCCTTGCCT
CCTGTCCATGCTCCCTTTTCGCCGTCACCGTCGACACCGCAGCGGCCGAG
CCCGACCCTTCCGCTTGCCCAAGCACGAGGGCAACATCTCGAGCTGGGTC
CGAACAAGGTATGGGACCCTCCTCCGGTCGTCCTCGTCATGGCGCACGGC
AGAACCACAACATGCGCTTGCAGCGTCAGAACTGGGGAACACAAAGTCAC
CATTTGATTCGCCCTCAAGAACACCGCAAGACGTCTGTGGCACATGTCCT
CGAGCATCTCATGAGCCATCAAAGACTCTCTGGTGTACTCTGTGGATCCT
GCATCTTGCATGGAAACGCGGCCCAACTTATGCCGTTTCACCCAGATCTT
TGCTTTTCTCCTACTTTAGGCCCTATATCTTCTTCTTCCTTCAGCACGCG
GATCTTCATGAGAGTGTGAATGTTCCTCGTAACTGA back to top
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