mRNA_S-firma_F_contig11026.1377.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11026.1377.1
Unique NamemRNA_S-firma_F_contig11026.1377.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11026.1377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11026contigS-firma_F_contig11026:312..1093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.9910593-CDS-S-firma_F_contig11026:311..4311622815650.9910593-CDS-S-firma_F_contig11026:311..431Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11026 312..431 -
1696949479.3133814-CDS-S-firma_F_contig11026:311..4311696949479.3133814-CDS-S-firma_F_contig11026:311..431Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11026 312..431 -
1622815651.0029824-CDS-S-firma_F_contig11026:937..10931622815651.0029824-CDS-S-firma_F_contig11026:937..1093Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11026 938..1093 -
1696949479.324804-CDS-S-firma_F_contig11026:937..10931696949479.324804-CDS-S-firma_F_contig11026:937..1093Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11026 938..1093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11026.1377.1prot_S-firma_F_contig11026.1377.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11026 312..1093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11026.1377.1

>prot_S-firma_F_contig11026.1377.1 ID=prot_S-firma_F_contig11026.1377.1|Name=mRNA_S-firma_F_contig11026.1377.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=92bp
MGRMIDKRRRVETAGTQADDDSGSSGGGGRLPAAVVADQEKPTSISLGEA
KQVLDGDDWRPKVATLRQLQDQLAAAEGALDAEDARDVVNFM
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mRNA from alignment at S-firma_F_contig11026:312..1093-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11026.1377.1 ID=mRNA_S-firma_F_contig11026.1377.1|Name=mRNA_S-firma_F_contig11026.1377.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=782bp|location=Sequence derived from alignment at S-firma_F_contig11026:312..1093- (Sphaerotrichia firma ET2_F female)
ATGGGGAGGATGATCGACAAGCGGAGACGGGTGGAAACCGCGGGTACCCA
GGCAGACGACGATAGCGGCAGCAGTGGTGGTGGTGGTAGACTGCCGGCGG
CGGTGGTGGCCGACCAGGAGAAGCCGACTTCCATCAGCCTGGGCGAGGCC
AAGCAGGTAGGAGGTCTCTTGTGCTTTTGCGTGCTTTGTGTGTTCTGTGT
GGGTGTTGTGTTTCCTGCGGGGGGGGGGGGAGGTTGGCCGTTGAGCAGCA
TCATATACGTGCATCCATCCGAAACGATACCGCAGTCGGATGCATATACG
TCTGCTGTGCATCGACTTCACCGCAAACCCGCGAGATCGATCAGTTCTGC
AAGGTCACATTGCTGTGGAGTCTTAACATGCAGGACTGCGAGGCCCAGCT
GTCGCTCTTCAGTGCTGCCACTCTCATCCTTCCCTACAGCAGCAGTGTCG
CCGTTAGACAAGACTACGTTGCATCGGTTTTTCATGTCTGGAAGGTCAAA
TGACTTTTGGATGTTGGATTCCTTCCGACACCCACCGGACGTCTGTTTGC
CCTCTCTCTCCATTTCTCCCTCTGTTGTTCTCTCTCTCTCTCTCTCGTGT
CCATTTCCATTCATCTCTTGCTCTGTTTCCTCCCCATCGCGGTTCTTGAT
CTGCCACGAAAGGTCCTCGACGGAGACGATTGGCGGCCCAAGGTGGCGAC
GCTTAGACAGCTCCAGGACCAGCTGGCGGCGGCGGAGGGAGCCTTGGACG
CCGAGGATGCGCGCGATGTCGTCAACTTCATG
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Coding sequence (CDS) from alignment at S-firma_F_contig11026:312..1093-

>mRNA_S-firma_F_contig11026.1377.1 ID=mRNA_S-firma_F_contig11026.1377.1|Name=mRNA_S-firma_F_contig11026.1377.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=552bp|location=Sequence derived from alignment at S-firma_F_contig11026:312..1093- (Sphaerotrichia firma ET2_F female)
ATGGGGAGGATGATCGACAAGCGGAGACGGGTGGAAACCGCGGGTACCCA
GGCAGACGACGATAGCGGCAGCAGTGGTGGTGGTGGTAGACTGCCGGCGG
CGGTGGTGGCCGACCAGGAGAAGCCGACTTCCATCAGCCTGGGCGAGGCC
AAGCAGATGGGGAGGATGATCGACAAGCGGAGACGGGTGGAAACCGCGGG
TACCCAGGCAGACGACGATAGCGGCAGCAGTGGTGGTGGTGGTAGACTGC
CGGCGGCGGTGGTGGCCGACCAGGAGAAGCCGACTTCCATCAGCCTGGGC
GAGGCCAAGCAGGTCCTCGACGGAGACGATTGGCGGCCCAAGGTGGCGAC
GCTTAGACAGCTCCAGGACCAGCTGGCGGCGGCGGAGGGAGCCTTGGACG
CCGAGGATGCGCGCGATGTCGTCAACTTCATGGTCCTCGACGGAGACGAT
TGGCGGCCCAAGGTGGCGACGCTTAGACAGCTCCAGGACCAGCTGGCGGC
GGCGGAGGGAGCCTTGGACGCCGAGGATGCGCGCGATGTCGTCAACTTCA
TG
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