mRNA_S-firma_F_contig11022.1373.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig11022.1373.1 vs. uniprot
Match: A0A0L0G3K8_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G3K8_9EUKA) HSP 1 Score: 112 bits (279), Expect = 4.400e-25 Identity = 86/259 (33.20%), Postives = 121/259 (46.72%), Query Frame = 1
Query: 208 TSGLLIVGGGTFVVLYSSCTMWTAGLRWWLTGKRLSRTQLTAVGLLCVGLGLNALSVHGHGSHDHDVHHDTGLPPDTTPHVVYL---------------------LGCGVALAGSVLHSLMFVLSETFLEATRMHPWALCGTLGTVEAGVLGAWNVFLLLATPAAADYDLSVAMHGGSLHWAAAGLLGLVACSAAHAASFFFMLKAVGSVTAAVFKGTQMVSVWLISAVFFCGYQETQCWTPESALSVIVVCAAMGLYA 921
T+GLL+VG G FVV+YSS +WTA L LT K+ S Q +G+L GL LN G S H H TG + + L +G V L GS LHS FVLSE + + LC +G E + A+ F+ S+ SL +A L ++ HA SFF +L +G+V +A+ K Q V V+ SAVFFC Y+ +QC +P +S+++V + +YA
Sbjct: 8 TTGLLMVGSGVFVVIYSSSMLWTALLSRCLTDKQFSTLQWAGIGVLTCGLLLN-----GFDSQPHTPHTPTGRTVEELSDMQQLETDRNGNIGGAVIGDGYSQVNVGVLVVLLGSALHSYFFVLSERIMYQRILSDAQLCAGVGLAETVLFSAYIAFVCGCFGTHEKLFSSMDDANTSLGYATMLWLSAAVVNSVHAGSFFIILGELGAVESALLKIIQTVCVFAFSAVFFCQYESSQCASPMKFMSMLLVACGLVVYA 261
BLAST of mRNA_S-firma_F_contig11022.1373.1 vs. uniprot
Match: A0A2A9MAK3_9APIC (Transporter/permease protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MAK3_9APIC) HSP 1 Score: 106 bits (265), Expect = 2.280e-22 Identity = 93/309 (30.10%), Postives = 146/309 (47.25%), Query Frame = 1
Query: 1 QPTLTDVVKYHGGIG--SALQMLPTLANVCGMAAVRLLPVVSATPSPLLAKRDRRMLAGVIAVDLVSGVFLTSGLLIVGGGTFVVLYSSCTMWTAGLRWWLTGKRLSRTQLTAVGLLCVGLGLNALSVHGHGSHDHDVHHDTGLPPDTTPHVVYLLGCGVALAGSVLHSLMFVLSETFLEA-TRMHPWALCGTLGTVEAGVLGAWNVFLLLATPAAADYDLSVAMHGGSLHWAAAGLLGLVACSAAHAASFFFMLKAVGSVTAAVFKGTQMVSVWLISAVFFCGYQETQCWTPESALSVIVVCAAMGLY 918
QP L D+++YHG + L +LPT GM V L S T + ++ R + V DL+ + +GL+ G + + S T+WTA L L K+L + Q + L+CVG L A+ V+ +H+ +G + L SVLH L FVL+E F+ ++ L G G + + VL AW V + A +A GGS+ L+ S +A+ +++LK +G+V++ V KG + V+L+S VF+C QE+QC T ALS +V + +Y
Sbjct: 29 QPLLVDLLRYHGAAEPTTLLYILPTYY---GMVLVGL---ASKTKKSMWQEKWGRA-SFVCMCDLLHQIAEKAGLVFAGSAAYTITASWSTVWTALLSLLLLQKQLKKHQWIGIVLICVGFSLKAMHVNFV-----QTNHEA-------------IGILLTLFASVLHGLSFVLNEKFMTGENQIEGPNLVGMCGLISSTVLTAW-VLVWTVPQWDALVTAEIARKGGSIPVVVVTYTALLVLSTLRSATLWYLLKHLGAVSSGVLKGARTALVFLLSHVFYCRLQESQCMTSVKALSAVVCVTGVVVY 311
BLAST of mRNA_S-firma_F_contig11022.1373.1 vs. uniprot
Match: A0A8J2X2Q5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2Q5_9STRA) HSP 1 Score: 105 bits (262), Expect = 3.480e-22 Identity = 108/331 (32.63%), Postives = 144/331 (43.50%), Query Frame = 1
Query: 1 QPTLTDVVKYHGGIGSALQMLPTLANVCGMAAVRLLPV-----------------VSATPSPLLAKRDRRMLAGVIAVDLVSGVFLTSGLLIVGGGTFVVLYSSCTMWTAGLRWWLTGKRLSRTQLTAVGLLCVGLGLNAL-SVH-----GHGSHDHDVHHDTGLPPDTTPHVVYLLGCGVALAGSVLHSLMFVLSETFLEATRMHPWALCGTLGTVEAGVLGAWNVFLLLATPAAADYDLSVAMHGGSLHWAAAGLLGLVACSAAHAASFFFMLKAVGSVTAAVFKGTQMVSVWLISAVFFCGYQETQCWTPESALSVIVVCAAMGLYAS 924
QPTL D ++ +G G A MLP LAN +A V L VS S L + R +A V +D ++ V + GLL VG G + VL+SS + A L + GKR S Q V L +G+ LN L SV GHG+ + LG GV L G+ LHSL V +E+ + + L +G VEA VL A NV LLLA A Y + H G + L HA + + +L G+V + +G QM+ V I+ + FCG C TP SV V + LYAS
Sbjct: 44 QPTLVDWLRSNGATGVA--MLPMLANTLAVACVAPLRELLLSEKRSYIDRQQWSWVSYIKSWRLKGKLLRRVAFVAFLDFLANVLVMIGLLFVGAGVYAVLFSSGVAFAA-LFSTVNGKRYSLRQWCGVALATLGMALNGLASVEDALDAGHGALGR-----------------FELGAGVILGGTALHSLSLVCAESVSAGEELTSFRLATYVGGVEASVLLAHNVVLLLARGADKLYLKHILKHQGDPTTVFIVYVALWFADLCHALAHYALLAGAGAVALTLSRGVQMLFVVGIAELAFCGDDARACLTPVKFASVASVAFGILLYAS 354
BLAST of mRNA_S-firma_F_contig11022.1373.1 vs. uniprot
Match: A0A7S2SW94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW94_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.060e-20 Identity = 98/312 (31.41%), Postives = 144/312 (46.15%), Query Frame = 1
Query: 58 MLPTLANVCGMAAVRLLPVVSATP-----SPLLAKRDR----RMLAGVIAVDLVSGVFLTSGLLIVGGGTFVVLYSSCTMWTAGLRWWLTGKRLSRTQLTAVGLLCVGLGLNALSVHGHGSHDHDVHHDTGLPPDTTPHVVYLLGCGVALAGSVLHSLMFVLSE-TFLEATRMHPWALCGTLGTVEAGVLGAWNV-FLLLATPAAADYDLSVAMHGGSLHWAAAGLLGLVACSAAHAASFFFMLKAVGSVTAAVFKGTQMVSVWLISAVFFCGYQETQCWTPESALSVIVVCAAMGLYASARPPVGGEGAAG 960
MLP L N GMA+V LL +S + P +++ + + L + AVD +SG + G L V FVVLY+SCT+WTA + +RLS + A+ + +GL +AL+ + G P + + V L+ LAG+ LHS L+E T + C +G +EA +L + + +LL P + ++ L A HAASFF++L GSVT V KG QMV V+L S V FC E+ C T V++V + Y+ A P G +AG
Sbjct: 102 MLPMLCNAVGMASVGLLTGISESSRSRVGQPCVSRVTQGTALQSLLRLAAVDFISGGLVVLGQLHVPSSLFVVLYASCTIWTAVIAQVWLKQRLSLARWCAIAAIALGLCGDALTA------------EIGTPQNGSRAGVLLV-----LAGAFLHSYTICLAERTIRLLPTVSSIEACSFMGAIEASILAFYEITHVLLDAPMPFPPSNVLVLYPL-----------LTFFQAVHAASFFYILGNFGSVTTGVLKGLQMVVVFLASDVLFCSADESDCVTASKFACVVLVVLGLLTYSWADPQRRGVTSAG 385
BLAST of mRNA_S-firma_F_contig11022.1373.1 vs. uniprot
Match: A0A7S1CED4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CED4_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 8.160e-19 Identity = 71/210 (33.81%), Postives = 95/210 (45.24%), Query Frame = 1
Query: 1 QPTLTDVVKYHGGIGSALQMLPTLANVCGMAAVRLLPVVSATPS-----------------------------PLLAKRD---RRMLAGVIAVDLVSGVFLTSGLLIVGGGTFVVLYSSCTMWTAGLRWWLTGKRLSRTQLTAVGLLCVGLGLNALSVHGHGSHDHDVHHDTGLPPDTTPHVVYLLGCGVALAGSVLHSLMFVLSETFLE 534
QPTL D VKY G +G+ L +LP+L N GMA V +P V TP PL D RR +A V +D+VSG GL +VG G +VV+Y+SCT+WTA L + + L Q T V L+ GL LNAL + + G + L G+VLHSLM+V++E +
Sbjct: 32 QPTLVDEVKYLGAVGAPLLLLPSLLNGIGMALVVFVPSVGLTPRSATKRPQFQYDLSALRRCLGAPSELVMALPLPLPLDYTLRRNVAAVSVLDIVSGALAMIGLTMVGSGVYVVIYASCTIWTAALSVLVLKRPLVPLQWTGVTLVAAGLVLNALG-------------NATVAQSEASAARMFWGTVITLGGAVLHSLMYVVNEHLMR 228
BLAST of mRNA_S-firma_F_contig11022.1373.1 vs. uniprot
Match: A0A7S2SDL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SDL2_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 3.600e-18 Identity = 64/178 (35.96%), Postives = 94/178 (52.81%), Query Frame = 1
Query: 1 QPTLTDVVKYHGGIGSALQMLPTLANVCGMAAVRLLPVVSATPSPLLAKRDRRMLAGVIAVDLVSGVFLTSGLLIVGGGTFVVLYSSCTMWTAGLRWWLTGKRLSRTQLTAVGLLCVGLGLNALSVHGHGSHDHDVHHDTGLPPDTTPHVVYLLGCGVALAGSVLHSLMFVLSETFLE 534
QP D +K G +G +LPTLANV GMA +L V S + S L ++ R++ AVD +SG+ LT G+L+ GG FV+ Y+SC +WTA L +++ + L+ Q + L+ VGL N L + S + ++G + L GS LHS MFV+SE L+
Sbjct: 48 QPIAIDYLKSRGALGRKCLVLPTLANVMGMACCGVL-VKSKSWSSLF--QNGRLILIAAAVDWISGMLLTGGILLTGGAIFVIFYNSCPVWTALLSYFVLKQTLTGPQTAGIILVSVGLIFNVLGNRSNAS--------ISVSQSEGNARTVMIGSIIVLLGSFLHSWMFVISEFALK 214
BLAST of mRNA_S-firma_F_contig11022.1373.1 vs. uniprot
Match: F0V995_NEOCL (Transporter/permease protein n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0V995_NEOCL) HSP 1 Score: 93.2 bits (230), Expect = 8.150e-18 Identity = 89/314 (28.34%), Postives = 146/314 (46.50%), Query Frame = 1
Query: 1 QPTLTDVVKYHGGIG--SALQMLPTLANVCGMAAVRLLPVVSATPSPLLAKRDRRMLAGVIAV-DLVSGVFLTSGLLIVGGGTFVVLYSSCTMWTAGLRWWLTGKRLSRTQLTAVGLLCVGLGLNALSVHGHGSHDHDVHHDTGLPPDTTPHVVYLLGCGVALAGSVLHSLMFVLSETFLEAT-RMHPWALCGTLGTVEAGVLGAWNVFLLLATPAAADYDL----SVAMHGGSLHWAAAGLLGLVACSAAHAASFFFMLKAVGSVTAAVFKGTQMVSVWLISAVFFCGYQETQCWTPESALSVIVVCAAMGLY 918
QP L D+++YHGG + L +LPT GM V L S T + ++ R A ++ + DL+ + + T+WTA L + KRL + Q + L+C+G + A ++ T +G + L SVLH L FVL+E ++ R+ L G G + + + +W L+ P +D+ S+A GGS+ AA + L S +A+ +++LK VG+V++ + KG + V+L+S VF+C QE+QC T ALSV++ A + +Y
Sbjct: 30 QPLLVDLLRYHGGAEPTTLLYLLPTYL---GMVFVGL---ASKTRKSIWNEKWGR--ASLLCLCDLLHQIAEKAXXXXXXXXXXXXXXXXXTVWTALLSLLILRKRLQKHQWLGILLICIGFSVKAAQIN------------------FTRTNYEAIGILLTLFASVLHGLSFVLNEKYMTGEHRIEGPNLVGMCGMISSTAVASW--ILVWTVP---QWDVRVRGSIASKGGSITVVAAVHVALFLLSVLRSATLWYLLKHVGAVSSGILKGARTAVVFLLSHVFYCHLQESQCMTSVKALSVVLCVAGVLVY 312
BLAST of mRNA_S-firma_F_contig11022.1373.1 vs. uniprot
Match: A0A6U3R0H4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3R0H4_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.910e-16 Identity = 88/291 (30.24%), Postives = 128/291 (43.99%), Query Frame = 1
Query: 1 QPTLTDVVKYHGGIGSALQ----MLPTLANVCGMAAVRLL--PVVSATPSPL--------LAKRDRRMLAGVIAVDLVSGVFLTSGLLIVGGGTFVVLYSSCTMWTAGLRWWLTGKRLSRTQLTAVGLLCVGLGLNALSVHGHGSHDHDVHHDTGLPPDTTPHVVYLLGCGVALAGSVLHSLMFVLSETFLEATRMHPWALCGTLGTVEAGVLGAWNVFLLLATPAAADYDLSVAMHGGSLHWAAAG------LLG---LVACSAAHAASFFFMLKAVGSVTAAVFKGTQM 804
QP + D ++ + + +LP L N GMA++ L PV L + L + +D SG L G L + FVVLYSSCT WTA L + GKRL+ Q + +C GL +AL + G G LAGS+LHSLMF + E+ L A+ + +C T+G+ E+ +L ++V+LL G S + AAG LL LV A HAA+FF +L ++G+ ++ V KG Q+
Sbjct: 24 QPLIVDYLRINDALPKVESDWPVLLPMLCNTLGMASLFFLHHPVCRTLSQQKKMSFRWSELPEGSHTRLVILTIIDFASGAVLMIGQLRISSNLFVVLYSSCTCWTALLSRFTLGKRLATMQWVGIFCVCAGLAGDALVSMALTEPGVSERGEVGASS---------FGMYAVLAGSLLHSLMFCMCESLLTAS-IPASVVCSTMGSGESIILALYHVYLLGP--------------GSSSRFEAAGRSDCYLLLTYALLVVVCALHAAAFFSILGSMGATSSGVLKGLQV 290
BLAST of mRNA_S-firma_F_contig11022.1373.1 vs. uniprot
Match: A0A7S1CE90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CE90_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 2.480e-11 Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 1
Query: 532 EATRMHPWALCGTLGTVEAGVLGAWNV--FLLLATPAAAD-YDLSVAMHGGSLHWAAAGLLGLVACSAAHAASFFFMLKAVGSVTAAVFKGTQMVSVWLISAVFFCGYQETQCWTPESALSVIVVCAAMGLYASAR 930
+A + P ALC +G E W LL A+PA D ++A G S+ A L+A + H+ +FF ML ++G+V + + K Q V+V+ SA+FFC Y+ +QC+TP A SV++V A + ++ R
Sbjct: 23 QAFALAPTALCSAMGVCETLYNLVWIAAYLLLFASPAHGDGLADTMAAAGTSVGKALLAWGLLIAANGGHSWAFFQMLGSIGAVASGMLKALQTVTVFTFSALFFCAYEASQCFTPLRAASVVLVLAGIATFSYGR 158
BLAST of mRNA_S-firma_F_contig11022.1373.1 vs. uniprot
Match: A0A7S3TWI1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TWI1_EMIHU) HSP 1 Score: 69.7 bits (169), Expect = 1.280e-10 Identity = 60/182 (32.97%), Postives = 85/182 (46.70%), Query Frame = 1
Query: 1 QPTLTDVVKYHGG---IGSALQMLPTLANVCGMAAVRLLPVVSATPSPLLAKRDRR------MLAGVIAVDLVSGVFLTSGLLIVGGGTFVVLYSSCTMWTAGLRWWLTGKRLSRTQLTAVGLLCVGLGLNALSVHGHGSHDHDVHHDTGLPPDTTPHVVYL-LGCGVALAGSVLHSLMFVL 516
QP LTD ++Y GG +G +L ++N GMA V L + + L + R L A+D SG LT+GLLIVG G +VV+YSS T+WTA L G+RL +L V L+ G L+A + T +L +GC + G+ LH+ +F L
Sbjct: 13 QPLLTDSIRYQGGAGHVGWPPTLLSMMSNTAGMALVGLR--LCGSERALFLRATERPSSTWWWLGMATAIDFSSGCLLTTGLLIVGSGVYVVIYSSTTVWTALLAR-CAGQRLEPVRLAGVLLVSAGTLLSARGAYSEAP---------------TAEAGWLAVGCAALVGGTALHAGIFSL 176 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11022.1373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig11022.1373.1 >prot_S-firma_F_contig11022.1373.1 ID=prot_S-firma_F_contig11022.1373.1|Name=mRNA_S-firma_F_contig11022.1373.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=325bp QPTLTDVVKYHGGIGSALQMLPTLANVCGMAAVRLLPVVSATPSPLLAKRback to top mRNA from alignment at S-firma_F_contig11022:378..1352+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig11022.1373.1 ID=mRNA_S-firma_F_contig11022.1373.1|Name=mRNA_S-firma_F_contig11022.1373.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=975bp|location=Sequence derived from alignment at S-firma_F_contig11022:378..1352+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig11022:378..1352+ >mRNA_S-firma_F_contig11022.1373.1 ID=mRNA_S-firma_F_contig11022.1373.1|Name=mRNA_S-firma_F_contig11022.1373.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1950bp|location=Sequence derived from alignment at S-firma_F_contig11022:378..1352+ (Sphaerotrichia firma ET2_F female)back to top |