mRNA_S-firma_F_contig1102.1369.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1102.1369.1
Unique NamemRNA_S-firma_F_contig1102.1369.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1102.1369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1102contigS-firma_F_contig1102:18349..18761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size415
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.9390018-UTR-S-firma_F_contig1102:18348..183771622815649.9390018-UTR-S-firma_F_contig1102:18348..18377Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1102 18349..18377 +
1696949478.613592-UTR-S-firma_F_contig1102:18348..183771696949478.613592-UTR-S-firma_F_contig1102:18348..18377Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1102 18349..18377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.9490666-CDS-S-firma_F_contig1102:18377..187611622815649.9490666-CDS-S-firma_F_contig1102:18377..18761Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1102 18378..18761 +
1696949478.6218772-CDS-S-firma_F_contig1102:18377..187611696949478.6218772-CDS-S-firma_F_contig1102:18377..18761Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1102 18378..18761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1102.1369.1prot_S-firma_F_contig1102.1369.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1102 18378..18761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1102.1369.1

>prot_S-firma_F_contig1102.1369.1 ID=prot_S-firma_F_contig1102.1369.1|Name=mRNA_S-firma_F_contig1102.1369.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=128bp
MVSGAGKLIGDPSACLCCCCSGTTKVPKRLCSELCVLLVRSELCLLSNRF
VRELLDLQHLTSVVFPHRLEANGKWQRAKSKSPPWHNYASPLDLFRFLPL
PLPSRAVSVSLCLYSFPNHPPPPHLSLC
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mRNA from alignment at S-firma_F_contig1102:18349..18761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1102.1369.1 ID=mRNA_S-firma_F_contig1102.1369.1|Name=mRNA_S-firma_F_contig1102.1369.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=413bp|location=Sequence derived from alignment at S-firma_F_contig1102:18349..18761+ (Sphaerotrichia firma ET2_F female)
GACTGAAGATCACCATCCTCTTCGTTGACATGGTGAGTGGAGCGGGAAAG
CTCATCGGGGATCCGTCTGCGTGTCTTTGCTGCTGCTGTTCTGGGACAAC
GAAGGTGCCGAAACGGCTGTGCTCTGAACTCTGCGTGTTGCTTGTCCGGA
GTGAGTTGTGTTTGCTTTCGAATCGTTTCGTTCGAGAGCTCCTAGATCTG
CAGCACCTGACTTCTGTTGTGTTCCCTCACAGGTTAGAAGCAAATGGCAA
ATGGCAGCGCGCCAAATCGAAATCGCCCCCCTGGCACAACTATGCGTCCC
CCCTTGATTTGTTTCGCTTTCTCCCTCTCCCTCTCCCATCCCGGGCTGTC
TCGGTCTCTCTCTGTCTCTACTCCTTCCCAAATCACCCCCCTCCCCCTCA
TCTCTCGCTCTGT
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Coding sequence (CDS) from alignment at S-firma_F_contig1102:18349..18761+

>mRNA_S-firma_F_contig1102.1369.1 ID=mRNA_S-firma_F_contig1102.1369.1|Name=mRNA_S-firma_F_contig1102.1369.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=768bp|location=Sequence derived from alignment at S-firma_F_contig1102:18349..18761+ (Sphaerotrichia firma ET2_F female)
ATGGTGAGTGGAGCGGGAAAGCTCATCGGGGATCCGTCTGCGTGTCTTTG
CTGCTGCTGTTCTGGGACAACGAAGGTGCCGAAACGGCTGTGCTCTGAAC
TCTGCGTGTTGCTTGTCCGGAGTGAGTTGTGTTTGCTTTCGAATCGTTTC
GTTCGAGAGCTCCTAGATCTGCAGCACCTGACTTCTGTTGTGTTCCCTCA
CAGGTTAGAAGCAAATGGCAAATGGCAGCGCGCCAAATCGAAATCGCCCC
CCTGGCACAACTATGCGTCCCCCCTTGATTTGTTTCGCTTTCTCCCTCTC
CCTCTCCCATCCCGGGCTGTCTCGGTCTCTCTCTGTCTCTACTCCTTCCC
AAATCACCCCCCTCCCCCTCATCTCTCGCTCTGTATGGTGAGTGGAGCGG
GAAAGCTCATCGGGGATCCGTCTGCGTGTCTTTGCTGCTGCTGTTCTGGG
ACAACGAAGGTGCCGAAACGGCTGTGCTCTGAACTCTGCGTGTTGCTTGT
CCGGAGTGAGTTGTGTTTGCTTTCGAATCGTTTCGTTCGAGAGCTCCTAG
ATCTGCAGCACCTGACTTCTGTTGTGTTCCCTCACAGGTTAGAAGCAAAT
GGCAAATGGCAGCGCGCCAAATCGAAATCGCCCCCCTGGCACAACTATGC
GTCCCCCCTTGATTTGTTTCGCTTTCTCCCTCTCCCTCTCCCATCCCGGG
CTGTCTCGGTCTCTCTCTGTCTCTACTCCTTCCCAAATCACCCCCCTCCC
CCTCATCTCTCGCTCTGT
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