mRNA_S-firma_F_contig11017.1363.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11017.1363.1
Unique NamemRNA_S-firma_F_contig11017.1363.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig11017.1363.1 vs. uniprot
Match: A0A1V9Y8S5_9STRA (Ubiquitin fusion degradation protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8S5_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.430e-30
Identity = 112/324 (34.57%), Postives = 159/324 (49.07%), Query Frame = 1
Query:   22 RRLCTTPATRLKNKRVALVVAYDGGGFHGSAMQK--DVPTVEQAVFDALAATGALNLREGHAPNAST-WQRCSRTDKGVHARRLVLGMKVRVDPGVVDEHR-RMRGLVDAVNDHLPASVRVLSAVQTSRGFQPRRYTYARTYEYVLPLWVLGGTAPGAACVEGRLEAFKATMGLYVGNNLFHNFTNPGTRATHVRLAAPLPRELALPSEATRATATTDISDTDTFAVYPREAFADTSLWRLDAEAFRTVFKAAVSDPHVLTDGTRSCPVVTVRVVGSSFLLHQIRYMVGMAVAVAQGVLPVEFVRAALLLPRMPPLPRVPPAGL 981
            RR  +  A + K K  ALV  Y G GFHG  +Q+  +VPT+EQ + +AL A G ++    +A  A   W R SRTDKGVHA  +V   K+ VD   +DE   R+ GL +A+N HLP ++R+ +A +  R F+ R     R YEY LPL  L   A     V+       AT+  Y G   FHNFT         +      +E AL  +   A +  D +D   + V P  +  + +   L     RT+++   S    L +       + + + G+SFLL+QIR MVG A+AVA G L      AAL   ++  +P  P  GL
Sbjct:   11 RRWLSVDAKKRKVK-AALVSGYLGTGFHGVQLQEHNNVPTIEQELRNALFAAGCIS-ESNYADMAKIGWSRSSRTDKGVHASCIVFSAKLLVDEDSIDESTGRLIGLPEALNKHLPDTIRMFTATKVHRSFRAREDCLLREYEYFLPLSFLEPFATPTNSVQDMAAKIIATLPKYEGIFDFHNFTKQRGSFYKQKDRKQSKKEAALSDDDEVAESEEDFNDN--YDVNPDVSIENGTRRALQRHR-RTIYRCQGS----LIEDFHGASYIRIHLTGASFLLNQIRCMVGAAIAVATGHLTPMLFEAALETNQIVRVPTAPAEGL 325          
BLAST of mRNA_S-firma_F_contig11017.1363.1 vs. uniprot
Match: A0A067C0B2_SAPPC (PseudoU_synth_1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0B2_SAPPC)

HSP 1 Score: 124 bits (310), Expect = 4.480e-28
Identity = 111/324 (34.26%), Postives = 153/324 (47.22%), Query Frame = 1
Query:   25 RLCTTPATRLKNKRVALVVAYDGGGFHGSAMQ--KDVPTVEQAVFDALAATGALNLREGHAPNAST--WQRCSRTDKGVHARRLVLGMKVRVDPGVVDE-HRRMRGLVDAVNDHLPASVRVLSAVQTSRGFQPRRYTYARTYEYVLPLWVLGGTAPGAACVEGRLEAFKATMGLYVGNNLFHNFTNPGTRATHVRLAAPLPRELALPSEATRATATTDISDTDTFAVYPREAFADTSLWRLDAEAFRTVFKAAVSDPHVLTDGTRSCPVVTVRVVGSSFLLHQIRYMVGMAVAVAQGVLPVEFVRAALLLPRMPPLPRVPPAGL 981
            RL +T A + K K VALV  Y G G+HG  +Q    VPTVE  V  AL   G +   E +  + S   W R SRTDKGVHA  +V   K+ VD   ++E   R+RGL +A+N HLP S+R+ +A +  + F+ R     R YEY LPL  L   A     VE   +   AT+  Y G   FHNFT     + +      + + +A  + +               +V P     +    R      RT+++   S    L       P + V + G+SFLL+QIR MVG A+AVA G L      AAL   ++  +P  P  GL
Sbjct:   13 RLFSTEAKKRKVK-VALVSGYLGTGYHGVQLQDTNGVPTVENEVRAALFKAGCI--LESNLADLSKIGWSRSSRTDKGVHASCIVFSAKLLVDSDSINETDGRLRGLPEAINAHLPPSIRMFTATKVHQSFRAREDCTLREYEYFLPLSFLAPLATNGQSVEAMADTILATLPRYEGIFDFHNFTKQ-RGSFYKEKDRRVAKRMAKDAMSDXXXXXXXXXXXXDLSV-PSNISIENGTRRSLQRHRRTIYRCRGS----LIQDFHGSPYLRVHLTGASFLLNQIRCMVGAAIAVATGHLSPMMFDAALETNQIVRVPTAPAEGL 327          
BLAST of mRNA_S-firma_F_contig11017.1363.1 vs. uniprot
Match: A0A1V9Z3D6_9STRA (Ubiquitin fusion degradation protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3D6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.620e-28
Identity = 109/328 (33.23%), Postives = 151/328 (46.04%), Query Frame = 1
Query:    7 GAHFRRRLCTTPATRLKNKRVALVVAYDGGGFHGSAMQ--KDVPTVEQAVFDALAATGALNLREGHAPNASTWQRCSRTDKGVHARRLVLGMKVRVDPGVVDEHR-RMRGLVDAVNDHLPASVRVLSAVQTSRGFQPRRYTYARTYEYVLPLWVLGGTAPGAACVEGRLEAFKATMGLYVGNNLFHNFTNPGTRATHVRLAAPLPRELALPSEATRATATTDISDTDTFAVYPREAFADTSLWRLDAEAFRTVFKAAVSDPHVLTDGTRSCPVVTVRVVGSSFLLHQIRYMVGMAVAVAQGVLPVEFVRAALLLPRMPPLPRVPPAGL 981
            G   +RR  +  A + K K VALV  Y G GFHG  +Q    VPTVE  +  AL   G +        N   W R SRTDKGVHA  +V   K+ VD   +DE   R+RGL + +N HLP +VR+ +A +  + F+ R     R YEY LPL  L   A     V+   +    T+  Y G   FHNFT    R++  +      +  AL  +          ++ ++    PR+        R      RT++    S    +       P + V ++G+SFLL+QIR MVG A+AVA G L      AAL    +  +P  P  GL
Sbjct: 1106 GRGLQRRFLSVAAKKRKVK-VALVSGYLGTGFHGVQLQDRNGVPTVEDTLRSALFKAGCIRDSNFDDMNKIGWSRSSRTDKGVHASIIVFSGKLLVDDDSIDEATGRLRGLPETINAHLPETVRIFTATKVHQSFRAREDCLLREYEYFLPLSFLAPHATPDRSVDAMAQTIIDTLPRYEGIFDFHNFTKQ--RSSFYKALDRRGKGDALTDDDEVHEDXXXXAEDES---RPRDISIQNGTRRSLERHRRTIYACRGS----IVPDFCGAPYLRVHLMGASFLLNQIRCMVGAAIAVATGHLTPTMFEAALETTHIVRVPTAPAEGL 1423          
BLAST of mRNA_S-firma_F_contig11017.1363.1 vs. uniprot
Match: A0A7S3UFR6_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFR6_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 1.560e-27
Identity = 99/324 (30.56%), Postives = 151/324 (46.60%), Query Frame = 1
Query:   37 TPATRLKNKRVALVVAYDGGGFHGSAMQKDVP---TVEQAVFDALAATGALNLREGHAPNASTWQRCSRTDKGVHARRLVLGMKVRVDPGVVDEHRRMRGLVDAVNDHLPASVRVLSAVQTSRGFQPRRYTYARTYEYVLPLWVLGGTAPGAACVEGRLEAFKATMGLYVGNNLFHNFTNPGTRATHVRLAAPLPRELALPSEATRATATTDISDTDTFAVYPREAFADTSL-WRLDAEA--------FRTVFKAAVSDPHVLTDGTRSCPVVTVRVVGSSFLLHQIRYMVGMAVAVAQGVLPVEFVRAALLLPRMPPLPRVPP 972
            T   RL  +R AL V Y G  + GS + ++     TVE+ + +A+   G +            W RCSRTDKGVHA   V+ +K+ V+PG  +       + + VN HLP  + V S  + S+ F+ R +  +RTY+Y +P  +LG         + RL+  + T+  YVGN  FHNFT       +V+  +    E   P+E    T      + +  A   R   A  SL W+L+ +         +R +    V +P     G    P+   +V G SF+ +QIR MVG A+A+  G +P++ + A    P    LP  PP
Sbjct:   38 TSKRRLAKRRAALFVGYAGSKYRGSQINRERAKGCTVEEILEEAIYRAGFIVENNYQDFGKLRWSRCSRTDKGVHAACNVVSLKLVVEPGAFEVDEEGIEIAERVNRHLPNDIHVSSVKRVSKSFRAREWCKSRTYQYYVPGKILGIENENPQ--KERLQKLQETLDFYVGNRPFHNFT---VMKNYVQKPSIEKDEGGGPAE----TMVFAGDENNIAAEERRSKRAWGSLKWQLEVDPRDKVGSSHYRKITDFVVKEPLRTAAGKYLVPL---QVTGVSFMYNQIRIMVGTAIAITMGAIPIDALPAFFAQPARTRLPIAPP 349          
BLAST of mRNA_S-firma_F_contig11017.1363.1 vs. uniprot
Match: I0Z2B4_COCSC (Pseudouridine synthase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z2B4_COCSC)

HSP 1 Score: 119 bits (299), Expect = 3.360e-27
Identity = 92/285 (32.28%), Postives = 128/285 (44.91%), Query Frame = 1
Query:  121 KDVPTVEQAVFDALAATGALNLREGHAPNASTWQRCSRTDKGVHARRLVLGMKVRVDPGVVDEHRRMRGLVDAVNDHLPAS-VRVLSAVQTSRGFQPRRYTYARTYEYVLPLWVLGGTAPGAACVEGRLEAFKATMGLYVGNNLFHNFTNPGTRATHVRLAAPLPRELALPSEATRATATTDISDTDTFAVYPREAFADTSLWRLDAEAFRTVFKAAVSDPHVLTDGTRSCPVVTVRVVGSSFLLHQIRYMVGMAVAVAQGVLPVEFVRAALLLPRMPPLPRVPP 972
            +D+ TVE A+ +A+   G +      A +   W R SRTDKGVH+   V+G+K+       +      G+   +N HLP   VRVLS  +T++ F  R+    R Y Y LP  ++G    G+     RL   +  + LY G + FHNFT      T  R         A      R TA     + D      R  F             R +F A   DP  L  G   C  + V   G SF+LHQIR+M+G AVAVA+G +P+++V   L  P    +P  PP
Sbjct:   15 EDITTVEAALEEAIFKAGGILESNRGALHKIDWSRSSRTDKGVHSCSTVIGLKMECVVESFESDPEGLGIAGEINKHLPGQQVRVLSVQRTTQKFDARQICEGRVYSYFLPTSIIGLELDGSEEDRERLRLLRECLALYEGVHAFHNFTKRRLYRTSQRKQG----RGAKRKGGGRVTAGAWNEERDEADPITRSHF-------------RHIFSATADDPTPLVPGGTPC--IKVVFSGQSFMLHQIRHMIGAAVAVARGTIPLDYVEGCLRSPSRAIMPLAPP 280          
BLAST of mRNA_S-firma_F_contig11017.1363.1 vs. uniprot
Match: A0A485KC76_9STRA (Aste57867_2617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KC76_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.530e-26
Identity = 101/310 (32.58%), Postives = 145/310 (46.77%), Query Frame = 1
Query:   64 RVALVVAYDGGGFHGSAMQK--DVPTVEQAVFDALAATGALNLREGHAPNAST-WQRCSRTDKGVHARRLVLGMKVRVDPGVVDEHR-RMRGLVDAVNDHLPASVRVLSAVQTSRGFQPRRYTYARTYEYVLPLWVLGGTAPGAACVEGRLEAFKATMGLYVGNNLFHNFTNPGTRATHVRLAAPLPRELALPSEATRATATTDISDTDTFAVYPREAFADTSLWRLDAEAFRTVFKAAVSDPHVLTDGTRSCPVVTVRVVGSSFLLHQIRYMVGMAVAVAQGVLPVEFVRAALLLPRMPPLPRVPPAGL 981
            +V LV  Y G G+HG  +Q+  DVPT+E  V +AL   G + L   +A  +   W R SRTDKGVHA  +VL  K+ V    +D    R+  LVD VN HLP +VRV SA +  + F+ R     R YEY LP+  L         V+  ++    T+ L+ G + FHNFT    +  +      L  +    +          +   D   V    + AD +   L     RT++         L         + +R+ G+SFLL+QIR MVG  + VA G + V+F+ AAL    +  +P  P  GL
Sbjct:   26 KVGLVTGYTGTGYHGVQIQENGDVPTIEYDVREALFKAGCI-LESNYADMSKIGWSRSSRTDKGVHATAIVLSAKLLVHEDRIDPVTGRIAHLVDEVNAHLPDAVRVFSATKVHQSFRAREECILREYEYFLPVEFLDQVCTNVP-VDAAVQTVLDTLPLFEGIHDFHNFTK---QRRYFYKLQELKEQRRGTTRXXXXXXXXXVLINDDEVVSRDISIADGTRKPLQRHR-RTIYSCR----GTLVPDLHGRAYIRIRLTGASFLLNQIRCMVGAVIGVASGAMDVDFLHAALDTNHIVRVPTAPAEGL 325          
BLAST of mRNA_S-firma_F_contig11017.1363.1 vs. uniprot
Match: A0A059LJQ1_9CHLO (PseudoU_synth_1 domain-containing protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LJQ1_9CHLO)

HSP 1 Score: 116 bits (291), Expect = 1.030e-25
Identity = 95/315 (30.16%), Postives = 145/315 (46.03%), Query Frame = 1
Query:   40 PATRLKNKRVALVVAYDGGGFHGSAMQKDVPTVEQAVFDALAATGALNLREGHAP--NASTWQRCSRTDKGVHARRLVLGMKVRVDPGVVDEHRRMRGLVDAVNDHLPASVRVLSAVQTSRGFQPRRYTYARTYEYVLPLW-------VLGGTAPGAACVEGRLEAFKATMGLYVGNNLFHNFTNPGTRATHVRLAAPLPRELALPSEATRATATTDISDTDTFAVYPREAFADTSLWRL-------DAEAFRTVFKAAVSDPHVLTDGTRSCPVVTVRVVGSSFLLHQIRYMVGMAVAVAQGVLPVEFVRAALL 936
            P  R K ++VAL +AY G G+HG      VPT+E  +F A+ A G +     +    N   W R +RTDKGV A   V+ +++ +DP          G+V+ +N+ LP  +RV    + + GF  R++   R YEY+LP+W       +L   A  A   +G +E   A       ++           A    L+     EL   +EA  A+   D ++        R+     +           +A+A R +          +  G+R   +V   VVG SF+LHQIR MVGMA+AVA+G+ P + +R ALL
Sbjct:   74 PFNRKKKRKVALFMAYVGAGYHGMQRNPGVPTIEDELFKAIYAAGGIAEANSNDAGFNKLHWMRAARTDKGVSAVGQVVSLRMILDPP---------GMVERINESLPRQIRVFGYGRATNGFDARKHCDKRRYEYILPVWAFDPDVCLLSKEAGAAVAADGEVERDAAAAPRAAEDD--------SAAAALPELSPAELAELESTAEAQSASYAFDAAEQARVTAILRQYEGTHNFHNFTVRTGAHEAQARRYILSFRCEGVTEIA-GSRWVRLV---VVGQSFMLHQIRKMVGMALAVARGLAPADSIRQALL 367          
BLAST of mRNA_S-firma_F_contig11017.1363.1 vs. uniprot
Match: A0A6G0WDH2_9STRA (PseudoU_synth_1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDH2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.740e-25
Identity = 98/317 (30.91%), Postives = 147/317 (46.37%), Query Frame = 1
Query:   64 RVALVVAYDGGGFHGSAMQK--DVPTVEQAVFDALAATGALNLREGHAPNASTWQRCSRTDKGVHARRLVLGMKVRVDPGVVDEHR-RMRGLVDAVNDHLPASVRVLSAVQTSRGFQPRRYTYARTYEYVLPLWVLGGTAPGAACVEGRLEAFKATMGLYVGNNLFHNFTNPGTRATHVRLAAPLPRELALPSEATRATATTDISDT-------DTFAVYPREAFADTSLWRLDAEAFRTVFKAAVSDPH-VLTDGTRSCPVVTVRVVGSSFLLHQIRYMVGMAVAVAQGVLPVEFVRAALLLPRMPPLPRVPPAGL 981
            +V LV+ Y G G+HG  +Q+  DVPT+E  V  AL   G +        +   W R SRTDKGVHA  +V+  K+ V    +D+   R+  LV+ +N HLP ++RV +A +  + F+ R     R YEY LP+  +       + V+  +E+   T+  + G   FHNFT    R    +  A   R  +   E ++     +I D+               +  AD SL         T  +  +      L       P + +R+ G+SFLL+QIR MVG  + VA G LP++   AAL   ++  LP  P  GL
Sbjct:   38 KVGLVMGYTGTGYHGVQIQEKNDVPTIEHEVRSALFKAGCILESNYGDMSKIGWSRSSRTDKGVHATSIVVSAKLLVHEERIDKKTGRIAQLVEDINVHLPENIRVFTATKVHQSFRAREECIMREYEYFLPVSFIEQVCKPVS-VDKAIESVLETLPRFEGIYDFHNFTKQ--RRYFYKRQAQKYRNRSRQEEDSQ-----EIIDSRXXXXXXXXXXXXXXDNLADISLTESGERKILTRHRRTIYTCRGTLLPDVNGEPFICIRLRGASFLLNQIRLMVGAVLGVASGALPLDMFDAALKTNQIVRLPTAPAEGL 346          
BLAST of mRNA_S-firma_F_contig11017.1363.1 vs. uniprot
Match: A0A7R9U2B2_9STRA (tRNA pseudouridine synthase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2B2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.050e-24
Identity = 101/337 (29.97%), Postives = 156/337 (46.29%), Query Frame = 1
Query:   52 LKNKRVALVVAYDGGGFHGSAMQKDVP--TVEQAVFDALAATGALN--LREGHAPNASTWQRCSRTDKGVHARRLVLGMKVRVD---PGVVDEHRR-----MRGLVDAVNDHLPASVRVLSAVQTSRGFQPRRYTYARTYEYVLPLWVLGGTAPGAACVEGRLEAFKATMGLYVGNNLFHNFTNPGTRATHVRLAAPLPRELALPSEATRATATTDISDTDTFAVYP---REAFADTSLW----------RLDAEAF-RTVFKAA-VSDPHVLTDGTRSCPVVTVRVVGSSFLLHQIRYMVGMAVAVAQGVLPVEFVRAALLLPRMPPLPRVPPAGL 981
            ++ K+VA+++ YDG  FHG+    D     VE  +F+AL   GA+     + + P+  +  R SRTDKGVHA R+V G KV +D       D+          GL   +N HLP +VR    V    GF  RR  + R Y YV+PL  +     GAA    R++     + L+ G + FH++T    ++  ++ A    R+  L  +  R     D+   +  A  P    E +A    W          R  ++ F  T++K     D    + G +  P V+VR+ G  F+ +QIR M+G  + V  G  P+E V ++LL  +   +P  P  GL
Sbjct:   41 VRKKKVAIILGYDGRPFHGNQFTTDPGCLAVENVLFEALWRGGAMKDETHQQNKPSKISLTRSSRTDKGVHAARIVFGAKVMLDMTEDAAADKPEAEGAPSAEGLKHRLNQHLPEAVRCWGVVPIRGGFNARRECHWREYVYVMPLAAMNVEQGGAAAALARMDE---CLKLFEGTHGFHHYTP--WKSFGIKDA----RQRVLAIKGNRNRYADDLELENFIAADPDLDEEEYAAAKEWFQGLDRHFNERPASQDFISTIYKCEREGDVFYTSVGGQEIPAVSVRICGQRFVYNQIRMMMGAVMGVVAGYYPLEAVHSSLLAEKALAMPLAPAEGL 368          
BLAST of mRNA_S-firma_F_contig11017.1363.1 vs. uniprot
Match: D8RMK1_SELML (PseudoU_synth_1 domain-containing protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RMK1_SELML)

HSP 1 Score: 112 bits (280), Expect = 2.450e-24
Identity = 96/328 (29.27%), Postives = 145/328 (44.21%), Query Frame = 1
Query:   61 KRVALVVAYDGGGFHGSAMQKDVP---TVEQAVFDALAATGALNLREGHAPNASTWQRCSRTDKGVHARRLVLGMKVRVDPGVVDEHRRMRGLVDAVNDHLPASVRVLSAVQTSRGFQPRRYTYARTYEYVLPLWVLG-GTAPGAACVEGRLEAFKATMGLYVGNNLFHNFT------NPGTRATHVRLAAPLPRELALPSEATRATATTDISDTDTFAVYPREAFADTSLWRLDAEA---------FRTVFKAAVSDPHVLTDGTRSCP--VVTVRVVGSSFLLHQIRYMVGMAVAVAQGVLPVEFVRAALLLPRMPPLPRVPPAGL 981
            K VA+ V Y G  + G  +Q+ V    +VE  + +A+   G ++       +   W+R SRTDKGVH+   V+ MK+ V             + DA N +LPA++ +   V  ++ F  RR  Y+RTY+Y  P   +G      +  V+ R++ F+ T+    G + FHN+T          R T+      +  E +   E      T D  D     +         + W  ++E          FR V K     P  L     +CP  VV +RV G SF++HQIR MVG A+AV + VLP + +  +        LP  PP GL
Sbjct:    2 KNVAIWVGYVGTDYKGLQIQRGVAGIHSVENELEEAIYKAGGISEENYRHLDKVRWKRSSRTDKGVHSLCTVVTMKLEVAVNSWLNDVDGIKIADAFNAYLPANISIFGVVPVTKSFDARRSCYSRTYDYYFPAACIGINNESSSEDVDQRIQDFRRTLKSLEGRHAFHNYTVRRLYRKSQRRGTYSPSRNLIADEESSEDEEPSFKDTHDEQDNPAADIGEERGAGRRAYWLDESEEGKDPVKASHFRNVAKCTCEGPEKL-----NCPSSVVRIRVTGESFMVHQIRKMVGTAIAVFRHVLPEDAIPVSTCRHARVVLPLAPPHGL 324          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11017.1363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9Y8S5_9STRA1.430e-3034.57Ubiquitin fusion degradation protein n=1 Tax=Thrau... [more]
A0A067C0B2_SAPPC4.480e-2834.26PseudoU_synth_1 domain-containing protein n=2 Tax=... [more]
A0A1V9Z3D6_9STRA5.620e-2833.23Ubiquitin fusion degradation protein n=1 Tax=Achly... [more]
A0A7S3UFR6_9CHLO1.560e-2730.56Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
I0Z2B4_COCSC3.360e-2732.28Pseudouridine synthase n=1 Tax=Coccomyxa subellips... [more]
A0A485KC76_9STRA2.530e-2632.58Aste57867_2617 protein n=1 Tax=Aphanomyces stellat... [more]
A0A059LJQ1_9CHLO1.030e-2530.16PseudoU_synth_1 domain-containing protein (Fragmen... [more]
A0A6G0WDH2_9STRA6.740e-2530.91PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
A0A7R9U2B2_9STRA2.050e-2429.97tRNA pseudouridine synthase (Fragment) n=1 Tax=Pin... [more]
D8RMK1_SELML2.450e-2429.27PseudoU_synth_1 domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11017contigS-firma_F_contig11017:514..1627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog112098.XP_008610900.1
Preferred namePUS1
PFAMsPseudoU_synth_1
Max annot lvl2759|Eukaryota
KEGG koko:K06173,ko:K14016,ko:K20674
KEGG Pathwayko04141,ko04624,map04141,map04624
KEGG ModuleM00400,M00403
GOsGO:0000049,GO:0000959,GO:0000963,GO:0001522,GO:0002153,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009982,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0019219,GO:0019222,GO:0030374,GO:0031119,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070525,GO:0070900,GO:0070902,GO:0071704,GO:0080090,GO:0090304,GO:0090646,GO:0097159,GO:0106029,GO:0140053,GO:0140098,GO:0140101,GO:0140110,GO:1900864,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990481,GO:2000112,GO:2001141
Evalue1.62e-30
EggNOG OGsCOG0101@1|root,KOG2553@2759|Eukaryota
EC5.4.99.12
Descriptionpseudouridine synthase activity
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03016
Hectar predicted targeting categorymitochondrion
Exons2
Model size984
Cds size984
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.7752998-CDS-S-firma_F_contig11017:513..6461622815649.7752998-CDS-S-firma_F_contig11017:513..646Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11017 514..646 +
1696949478.5240064-CDS-S-firma_F_contig11017:513..6461696949478.5240064-CDS-S-firma_F_contig11017:513..646Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11017 514..646 +
1622815649.7852252-CDS-S-firma_F_contig11017:776..16271622815649.7852252-CDS-S-firma_F_contig11017:776..1627Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11017 777..1627 +
1696949478.534799-CDS-S-firma_F_contig11017:776..16271696949478.534799-CDS-S-firma_F_contig11017:776..1627Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11017 777..1627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11017.1363.1prot_S-firma_F_contig11017.1363.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11017 514..1627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11017.1363.1

>prot_S-firma_F_contig11017.1363.1 ID=prot_S-firma_F_contig11017.1363.1|Name=mRNA_S-firma_F_contig11017.1363.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=328bp
MWGAHFRRRLCTTPATRLKNKRVALVVAYDGGGFHGSAMQKDVPTVEQAV
FDALAATGALNLREGHAPNASTWQRCSRTDKGVHARRLVLGMKVRVDPGV
VDEHRRMRGLVDAVNDHLPASVRVLSAVQTSRGFQPRRYTYARTYEYVLP
LWVLGGTAPGAACVEGRLEAFKATMGLYVGNNLFHNFTNPGTRATHVRLA
APLPRELALPSEATRATATTDISDTDTFAVYPREAFADTSLWRLDAEAFR
TVFKAAVSDPHVLTDGTRSCPVVTVRVVGSSFLLHQIRYMVGMAVAVAQG
VLPVEFVRAALLLPRMPPLPRVPPAGLL
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mRNA from alignment at S-firma_F_contig11017:514..1627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11017.1363.1 ID=mRNA_S-firma_F_contig11017.1363.1|Name=mRNA_S-firma_F_contig11017.1363.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1114bp|location=Sequence derived from alignment at S-firma_F_contig11017:514..1627+ (Sphaerotrichia firma ET2_F female)
ATGTGGGGGGCGCATTTCAGGAGACGGCTGTGCACCACCCCTGCCACGCG GCTAAAGAACAAGCGGGTGGCACTTGTTGTTGCCTACGACGGCGGTGGCT TCCACGGCTCAGCCATGCAAAAGGACGTACCAAGTGCGTTCGTGCACTCT ACATCTGTGTGTTTGTGTGTGTGTGTGTGTGTTAGGTGTGTGTGTGTGTG TGCCATTGTGGCAGTGCTTGTGCGTGACAATGTAAACATGCACCTCACCT CTCCATCTGGCAGCCGTGGAGCAAGCAGTGTTTGACGCGCTGGCGGCCAC GGGGGCGTTGAACTTGAGGGAGGGCCACGCCCCCAACGCTTCCACATGGC AGCGGTGCAGCCGGACGGACAAGGGCGTGCACGCCCGGCGGCTGGTGCTG GGCATGAAGGTGCGGGTGGACCCCGGCGTGGTGGACGAACACCGCCGCAT GAGGGGCCTGGTGGACGCGGTGAACGACCACCTTCCGGCGTCGGTGAGGG TGCTGTCCGCGGTGCAGACGTCCCGCGGGTTCCAGCCACGGCGGTACACG TACGCGCGGACGTACGAGTACGTGCTGCCGTTGTGGGTGTTGGGCGGCAC GGCCCCTGGGGCGGCCTGCGTGGAGGGCCGCCTGGAGGCCTTCAAGGCCA CCATGGGGCTGTACGTCGGCAACAACCTGTTCCACAACTTCACCAACCCC GGCACGCGGGCGACCCACGTCCGGCTTGCCGCCCCCCTCCCCCGCGAGCT CGCCCTCCCGTCCGAAGCCACGCGCGCCACTGCCACGACTGACATTTCAG ACACGGATACGTTTGCGGTGTACCCCCGGGAGGCGTTTGCGGACACCTCC TTGTGGCGCCTTGACGCTGAGGCGTTCCGCACCGTGTTCAAGGCCGCGGT GTCAGACCCACACGTCCTCACTGACGGCACCCGCAGCTGCCCCGTTGTCA CCGTCCGGGTGGTCGGCAGCAGCTTCCTCCTCCACCAAATCCGGTACATG GTTGGCATGGCAGTGGCCGTCGCGCAAGGCGTGCTCCCCGTGGAGTTTGT GCGGGCGGCGCTACTGCTGCCCCGCATGCCCCCCCTGCCGCGCGTCCCCC CCGCCGGGCTGCTG
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Coding sequence (CDS) from alignment at S-firma_F_contig11017:514..1627+

>mRNA_S-firma_F_contig11017.1363.1 ID=mRNA_S-firma_F_contig11017.1363.1|Name=mRNA_S-firma_F_contig11017.1363.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1968bp|location=Sequence derived from alignment at S-firma_F_contig11017:514..1627+ (Sphaerotrichia firma ET2_F female)
ATGTGGGGGGCGCATTTCAGGAGACGGCTGTGCACCACCCCTGCCACGCG
GCTAAAGAACAAGCGGGTGGCACTTGTTGTTGCCTACGACGGCGGTGGCT
TCCACGGCTCAGCCATGCAAAAGGACGTACCAAATGTGGGGGGCGCATTT
CAGGAGACGGCTGTGCACCACCCCTGCCACGCGGCTAAAGAACAAGCGGG
TGGCACTTGTTGTTGCCTACGACGGCGGTGGCTTCCACGGCTCAGCCATG
CAAAAGGACGTACCAACCGTGGAGCAAGCAGTGTTTGACGCGCTGGCGGC
CACGGGGGCGTTGAACTTGAGGGAGGGCCACGCCCCCAACGCTTCCACAT
GGCAGCGGTGCAGCCGGACGGACAAGGGCGTGCACGCCCGGCGGCTGGTG
CTGGGCATGAAGGTGCGGGTGGACCCCGGCGTGGTGGACGAACACCGCCG
CATGAGGGGCCTGGTGGACGCGGTGAACGACCACCTTCCGGCGTCGGTGA
GGGTGCTGTCCGCGGTGCAGACGTCCCGCGGGTTCCAGCCACGGCGGTAC
ACGTACGCGCGGACGTACGAGTACGTGCTGCCGTTGTGGGTGTTGGGCGG
CACGGCCCCTGGGGCGGCCTGCGTGGAGGGCCGCCTGGAGGCCTTCAAGG
CCACCATGGGGCTGTACGTCGGCAACAACCTGTTCCACAACTTCACCAAC
CCCGGCACGCGGGCGACCCACGTCCGGCTTGCCGCCCCCCTCCCCCGCGA
GCTCGCCCTCCCGTCCGAAGCCACGCGCGCCACTGCCACGACTGACATTT
CAGACACGGATACGTTTGCGGTGTACCCCCGGGAGGCGTTTGCGGACACC
TCCTTGTGGCGCCTTGACGCTGAGGCGTTCCGCACCGTGTTCAAGGCCGC
GGTGTCAGACCCACACGTCCTCACTGACGGCACCCGCAGCTGCCCCGTTG
TCACCGTCCGGGTGGTCGGCAGCAGCTTCCTCCTCCACCAAATCCGGTAC
ATGGTTGGCATGGCAGTGGCCGTCGCGCAAGGCGTGCTCCCCGTGGAGTT
TGTGCGGGCGGCGCTACTGCTGCCCCGCATGCCCCCCCTGCCGCGCGTCC
CCCCCGCCGGGCTGCTGCCGTGGAGCAAGCAGTGTTTGACGCGCTGGCGG
CCACGGGGGCGTTGAACTTGAGGGAGGGCCACGCCCCCAACGCTTCCACA
TGGCAGCGGTGCAGCCGGACGGACAAGGGCGTGCACGCCCGGCGGCTGGT
GCTGGGCATGAAGGTGCGGGTGGACCCCGGCGTGGTGGACGAACACCGCC
GCATGAGGGGCCTGGTGGACGCGGTGAACGACCACCTTCCGGCGTCGGTG
AGGGTGCTGTCCGCGGTGCAGACGTCCCGCGGGTTCCAGCCACGGCGGTA
CACGTACGCGCGGACGTACGAGTACGTGCTGCCGTTGTGGGTGTTGGGCG
GCACGGCCCCTGGGGCGGCCTGCGTGGAGGGCCGCCTGGAGGCCTTCAAG
GCCACCATGGGGCTGTACGTCGGCAACAACCTGTTCCACAACTTCACCAA
CCCCGGCACGCGGGCGACCCACGTCCGGCTTGCCGCCCCCCTCCCCCGCG
AGCTCGCCCTCCCGTCCGAAGCCACGCGCGCCACTGCCACGACTGACATT
TCAGACACGGATACGTTTGCGGTGTACCCCCGGGAGGCGTTTGCGGACAC
CTCCTTGTGGCGCCTTGACGCTGAGGCGTTCCGCACCGTGTTCAAGGCCG
CGGTGTCAGACCCACACGTCCTCACTGACGGCACCCGCAGCTGCCCCGTT
GTCACCGTCCGGGTGGTCGGCAGCAGCTTCCTCCTCCACCAAATCCGGTA
CATGGTTGGCATGGCAGTGGCCGTCGCGCAAGGCGTGCTCCCCGTGGAGT
TTGTGCGGGCGGCGCTACTGCTGCCCCGCATGCCCCCCCTGCCGCGCGTC
CCCCCCGCCGGGCTGCTG
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