mRNA_S-firma_F_contig1101.1352.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1101.1352.1
Unique NamemRNA_S-firma_F_contig1101.1352.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1101.1352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1101contigS-firma_F_contig1101:2496..3460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size965
Cds size672
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.7718906-CDS-S-firma_F_contig1101:2495..31671622815648.7718906-CDS-S-firma_F_contig1101:2495..3167Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 2496..3167 +
1696949477.8713467-CDS-S-firma_F_contig1101:2495..31671696949477.8713467-CDS-S-firma_F_contig1101:2495..3167Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 2496..3167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.7816865-UTR-S-firma_F_contig1101:3167..34601622815648.7816865-UTR-S-firma_F_contig1101:3167..3460Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 3168..3460 +
1696949477.8801012-UTR-S-firma_F_contig1101:3167..34601696949477.8801012-UTR-S-firma_F_contig1101:3167..3460Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 3168..3460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1101.1352.1prot_S-firma_F_contig1101.1352.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1101 2496..3167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1101.1352.1

>prot_S-firma_F_contig1101.1352.1 ID=prot_S-firma_F_contig1101.1352.1|Name=mRNA_S-firma_F_contig1101.1352.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=224bp
MEPARPTLLSPKRHTWHHPRLSSDTDNFTRSARPALQCGCPVDPLIRQLR
FFFSSNHYNIQIPPVGVKRACVQSFFRPHKNQLGKQSCGHPRQSIILSQH
EYRCPCSRISYIPLTSGASHTRSAVLMPPAHRHVAVVFVTGKSIGPTSFL
ALYYLSRLKILQQRRNLKCHPISLASAYYVVEVNESSWHQLHSRSLRFSD
AAARRLLRLNPYTTAVTPPNLLL*
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mRNA from alignment at S-firma_F_contig1101:2496..3460+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1101.1352.1 ID=mRNA_S-firma_F_contig1101.1352.1|Name=mRNA_S-firma_F_contig1101.1352.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=965bp|location=Sequence derived from alignment at S-firma_F_contig1101:2496..3460+ (Sphaerotrichia firma ET2_F female)
ATGGAGCCTGCGCGCCCAACCCTTTTATCGCCAAAACGACACACCTGGCA
TCATCCCCGCCTATCCTCGGATACGGATAACTTTACACGGTCCGCACGAC
CCGCACTGCAGTGCGGTTGCCCCGTCGATCCCCTCATACGACAATTACGT
TTCTTTTTTTCCTCCAACCACTATAACATCCAAATTCCACCAGTCGGTGT
CAAACGCGCATGCGTCCAATCATTCTTCCGCCCCCACAAAAATCAGTTGG
GGAAGCAGTCGTGCGGGCACCCACGACAATCTATTATTTTATCGCAACAC
GAATACCGTTGCCCATGCTCAAGAATCAGCTATATCCCTTTAACAAGTGG
AGCCTCTCACACACGCTCAGCGGTGCTGATGCCACCAGCACATCGCCATG
TTGCTGTAGTGTTTGTCACAGGGAAGTCCATCGGCCCAACCTCGTTTTTG
GCGCTTTATTATCTCTCTCGCCTAAAAATATTACAACAGCGCAGGAATCT
CAAATGCCACCCCATCTCCTTGGCATCGGCCTATTACGTAGTAGAAGTAA
ATGAAAGCTCATGGCATCAGCTACACTCGCGCAGCCTTCGTTTCTCTGAC
GCTGCCGCACGGCGCCTACTCAGGCTCAATCCGTACACAACTGCTGTTAC
ACCGCCAAATCTACTGCTTTAGAAACTTTCCAAGTGACGTCGCTGCCATT
TCAACACCGGGCTTCGACCGCTGCTGCGGTGGCCGGTGCTTGCTCCAAGA
CTATTCAGTGGGCGTCTATCTTTTTTCGTAGCCTCTCGTTGCGCGTAAGA
GGCCCGGCGTGCGTCGCCACAACCTTAGATCTGAGTTTGACCGCGTAGGT
TTCGCGTTTGACAGCAGTCATTAGTCCAAAAACGCTATTTCTGCGCACCG
CTGCTTGGACGCGCAAGGACCCGTTTATCACCCTCTCATCGGCTATGTTG
CTCTATTGGAATGTC
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Coding sequence (CDS) from alignment at S-firma_F_contig1101:2496..3460+

>mRNA_S-firma_F_contig1101.1352.1 ID=mRNA_S-firma_F_contig1101.1352.1|Name=mRNA_S-firma_F_contig1101.1352.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1344bp|location=Sequence derived from alignment at S-firma_F_contig1101:2496..3460+ (Sphaerotrichia firma ET2_F female)
ATGGAGCCTGCGCGCCCAACCCTTTTATCGCCAAAACGACACACCTGGCA
TCATCCCCGCCTATCCTCGGATACGGATAACTTTACACGGTCCGCACGAC
CCGCACTGCAGTGCGGTTGCCCCGTCGATCCCCTCATACGACAATTACGT
TTCTTTTTTTCCTCCAACCACTATAACATCCAAATTCCACCAGTCGGTGT
CAAACGCGCATGCGTCCAATCATTCTTCCGCCCCCACAAAAATCAGTTGG
GGAAGCAGTCGTGCGGGCACCCACGACAATCTATTATTTTATCGCAACAC
GAATACCGTTGCCCATGCTCAAGAATCAGCTATATCCCTTTAACAAGTGG
AGCCTCTCACACACGCTCAGCGGTGCTGATGCCACCAGCACATCGCCATG
TTGCTGTAGTGTTTGTCACAGGGAAGTCCATCGGCCCAACCTCGTTTTTG
GCGCTTTATTATCTCTCTCGCCTAAAAATATTACAACAGCGCAGGAATCT
CAAATGCCACCCCATCTCCTTGGCATCGGCCTATTACGTAGTAGAAGTAA
ATGAAAGCTCATGGCATCAGCTACACTCGCGCAGCCTTCGTTTCTCTGAC
GCTGCCGCACGGCGCCTACTCAGGCTCAATCCGTACACAACTGCTGTTAC
ACCGCCAAATCTACTGCTTTAGATGGAGCCTGCGCGCCCAACCCTTTTAT
CGCCAAAACGACACACCTGGCATCATCCCCGCCTATCCTCGGATACGGAT
AACTTTACACGGTCCGCACGACCCGCACTGCAGTGCGGTTGCCCCGTCGA
TCCCCTCATACGACAATTACGTTTCTTTTTTTCCTCCAACCACTATAACA
TCCAAATTCCACCAGTCGGTGTCAAACGCGCATGCGTCCAATCATTCTTC
CGCCCCCACAAAAATCAGTTGGGGAAGCAGTCGTGCGGGCACCCACGACA
ATCTATTATTTTATCGCAACACGAATACCGTTGCCCATGCTCAAGAATCA
GCTATATCCCTTTAACAAGTGGAGCCTCTCACACACGCTCAGCGGTGCTG
ATGCCACCAGCACATCGCCATGTTGCTGTAGTGTTTGTCACAGGGAAGTC
CATCGGCCCAACCTCGTTTTTGGCGCTTTATTATCTCTCTCGCCTAAAAA
TATTACAACAGCGCAGGAATCTCAAATGCCACCCCATCTCCTTGGCATCG
GCCTATTACGTAGTAGAAGTAAATGAAAGCTCATGGCATCAGCTACACTC
GCGCAGCCTTCGTTTCTCTGACGCTGCCGCACGGCGCCTACTCAGGCTCA
ATCCGTACACAACTGCTGTTACACCGCCAAATCTACTGCTTTAG
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