mRNA_S-firma_F_contig11004.1345.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11004.1345.1
Unique NamemRNA_S-firma_F_contig11004.1345.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig11004.1345.1 vs. uniprot
Match: G4YQV2_PHYSP (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4YQV2_PHYSP)

HSP 1 Score: 212 bits (540), Expect = 1.760e-62
Identity = 118/279 (42.29%), Postives = 164/279 (58.78%), Query Frame = 1
Query:   16 VFSVPASLLLSVSTAEES--LPEVFALREELSLTEDDLLAIHLMHEKHVVGDGSRWKPHIDLLPAGEDVHNAFYFTDDEKRLLAGSNIAHLAQVMQNQVRMDYARIFPTLFRKCALTVLCVVDAAPPRSTFSMNEYRWAIAMIWSRFVSIPLGKASFKAMVPFFDMLNHSPTARTRHEFDATTSSFRLVTDVKIKAGEQVHLNYGPLGNQRLLQYKGFVIPGNPFDHVDVYLGMDPSADNY--EAKQAVFTRCSQMPTVPFPLIADRLNDRFIATLRVQ 840
            VFS+P   +LSV + +E+  L  +   ++     EDD LAI L++EK V G  S+W  HI+LLP     HNA YF  +E R L GSN+  +AQ M+ +V  DYAR+  ++  +    V   ++       FS+  Y+WA++ IWSRF  +P+ K SFKAMVP FDMLNH P A   H FD +T  F+LV+     AG Q+ +NYGPL N +LL   GFVI GNPFD V+++L MD ++  +  E +Q + T      T PF L+AD  ND  +   R+Q
Sbjct:   59 VFSIPLDSVLSVKSLQENAVLQSIAFFQQLTPEREDDQLAIALLYEKFVRGSKSKWAKHIELLP--RTYHNALYFGPEELRALEGSNVYFIAQQMEEKVAHDYARLKESVLLELFENVPEGINVDLFDEFFSLENYKWALSTIWSRFGDVPVAKQSFKAMVPVFDMLNHDPEAEMSHFFDMSTQRFKLVSHQHWNAGAQMFINYGPLSNHKLLALYGFVIIGNPFDAVEMWLPMDEASTKFFQEKEQLLLTNGLDHATNPFELVADESNDLLLMAARIQ 335          
BLAST of mRNA_S-firma_F_contig11004.1345.1 vs. uniprot
Match: A0A485L3E1_9STRA (Aste57867_15011 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3E1_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.530e-58
Identity = 120/288 (41.67%), Postives = 163/288 (56.60%), Query Frame = 1
Query:   16 VFSVPASLLLSVSTAEESLPEVFALREELSLT--EDDLLAIHLMHEKHVVGDGSRWKPHIDLLPAGEDVHNAFYFTDDEKRLLAGSNIAHLAQVMQNQVRMDYARIFPTLFRKCALTVLCVVDAAPPRSTFSMNEYRWAIAMIWSRFVSIPLGKASF-KAMVPFFDMLNHSPTARTRHEFDATTSSFRLVTDVKIKAGEQVHLNYGPLGNQRLLQYKGFVIPGNPFDHVDVYLGMDPSADNYEAKQAVFTR---CSQMPTVPFPLIADRLNDRFIATLRVQRATKAEL 861
            V S+PA  LL+V T  +S      L++ LSL   EDD+LA  LM+E  +    S+WK H+D+LP  +  HN  YFT DE  +L GSN+ ++A  +Q QV  D+A +  TL       +     A      FSMN Y+WA+++IWSRFVS+ L +    K+MVP FDM NH PTA+  H FD TT+SF L T     AG Q+ +NYG L N +LL   GFV+  NPFD V++Y  M   A ++  K  +         +  VPF L AD +ND  +A LR+QR    +L
Sbjct:   49 VLSIPAESLLNVHTMAQS-----PLKDLLSLPLCEDDMLAWFLMYETFL-NPSSKWKRHLDVLP--KTFHNILYFTQDEIDMLEGSNVYYVAMQLQKQVASDFAALQQTLLPDTLRLLSADFSAETLLDAFSMNHYKWALSVIWSRFVSVALDEDILAKSMVPVFDMFNHDPTAQMTHGFDPTTNSFVLRTHQHWSAGSQIFINYGALPNHKLLPLYGFVLASNPFDAVELYAPMGEDAPDFSRKLELLEDHGLAEHVAGVPFELFADSVNDELLAYLRIQRLDGGDL 328          
BLAST of mRNA_S-firma_F_contig11004.1345.1 vs. uniprot
Match: A0A0W8CD61_PHYNI (Ribosomal N-lysine methyltransferase set10 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CD61_PHYNI)

HSP 1 Score: 200 bits (509), Expect = 1.330e-57
Identity = 115/294 (39.12%), Postives = 164/294 (55.78%), Query Frame = 1
Query:   16 VFSVPASLLLSVSTAEE--SLPEVFALREELSLTEDDLLAIHLMHEKHVVGDGSRWKPHIDLLPAGEDVHNAFYFTDDEKRLLAGSNIAHLAQVMQNQVRMDYARIFPTLFRKCALTVLCVVDAAPPRSTFSMNEYRWAIAMIWSRFVS---------------IPLGKASFKAMVPFFDMLNHSPTARTRHEFDATTSSFRLVTDVKIKAGEQVHLNYGPLGNQRLLQYKGFVIPGNPFDHVDVYLGMDPSADNY--EAKQAVFTRCSQMPTVPFPLIADRLNDRFIATLRVQ 840
            VFS+P   +LSV + +E  +L  +   ++     EDD LA+ L++EK V GD S+W  HI+LLP  +  HNA YF  +E + L GSN+  +AQ M+ +V  DY  +  T+  +    +   +        FS++ Y+WA++ IWSRFVS               +P+ K SFKAMVP FDMLNH P A   H FD  T  F+LV+     AG Q+ +NYGPL N +LL   GFVI GNPFD V+++L MD ++  +  E +Q +        T PF L+A+  ND  +   R+Q
Sbjct:   63 VFSIPLDSVLSVKSLQEISALQNIAFFQQLTPEREDDQLALALLYEKFVQGDKSKWAKHIELLP--KTYHNALYFEQEEIKALEGSNLFFIAQQMEKKVAADYTSLKETVLLELFENITEGITVDLFDDFFSLDNYKWALSTIWSRFVSLRLDEAPSSKDSSSSVPVAKQSFKAMVPVFDMLNHDPEAEMSHFFDMDTQLFKLVSHQHWNAGTQMFINYGPLSNHKLLLLYGFVIIGNPFDAVEMWLPMDEASTKFYLEKEQFLLINGLDHATNPFELVAEETNDLLLMATRIQ 354          
BLAST of mRNA_S-firma_F_contig11004.1345.1 vs. uniprot
Match: A0A2P4WYX0_9STRA (Histone-lysine N-methyltransferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4WYX0_9STRA)

HSP 1 Score: 199 bits (505), Expect = 3.440e-57
Identity = 115/280 (41.07%), Postives = 163/280 (58.21%), Query Frame = 1
Query:   16 VFSVPASLLLSVSTAEES--LPEVFALREELSLTEDDLLAIHLMHEKHVVGDGSRWKPHIDLLPAGEDVHNAFYFTDDEKRLLAGSNIAHLAQVMQNQVRMDYARIFPTLFRKCALTVLCVVDAAPPRSTFSMNEYRWAIAMIWSRFVS--IPLGKASFKAMVPFFDMLNHSPTARTRHEFDATTSSFRLVTDVKIKAGEQVHLNYGPLGNQRLLQYKGFVIPGNPFDHVDVYLGMDP-SADNYEAKQAVFTRCSQMPTVPFPLIADRLNDRFIATLRVQ 840
            VFS+P   +LSV + +E+  L  +   ++     EDD LAI L++EK V+G  S+W  HI+LLP  +  +NA Y   +  +LL GSN+  +AQ M+ +V +DYAR+  ++  +    V   ++       FS   Y+WA++ IWSRFV    P+ K SFKAMVP FDMLNH P A   H FD  T  F+LV+     AG Q+ +NYG L N +LL   GFVI GNPFD V+++L MD  SA  +E +Q + +      + PF L+AD  ND  +   R+Q
Sbjct:   59 VFSIPLDSVLSVKSLQENAVLQGIEFFQQLTPEREDDQLAIALLYEKFVLGSKSKWSKHIELLP--QTYYNALYIEQEVLKLLEGSNLFFIAQQMEQKVALDYARLKESVLLELFENVTEGINFDLFDEYFSFENYKWALSTIWSRFVKSDAPVAKQSFKAMVPVFDMLNHDPEAEMSHFFDMDTQRFKLVSHQHWNAGAQMFINYGALSNHKLLSLYGFVIIGNPFDAVEMWLPMDEGSAFFHEKEQLLLSNGLDHASNPFELVADETNDLLLMATRIQ 336          
BLAST of mRNA_S-firma_F_contig11004.1345.1 vs. uniprot
Match: W2KAV5_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KAV5_PHYPR)

HSP 1 Score: 199 bits (506), Expect = 3.690e-57
Identity = 114/294 (38.78%), Postives = 164/294 (55.78%), Query Frame = 1
Query:   16 VFSVPASLLLSVSTAEE--SLPEVFALREELSLTEDDLLAIHLMHEKHVVGDGSRWKPHIDLLPAGEDVHNAFYFTDDEKRLLAGSNIAHLAQVMQNQVRMDYARIFPTLFRKCALTVLCVVDAAPPRSTFSMNEYRWAIAMIWSRFVS---------------IPLGKASFKAMVPFFDMLNHSPTARTRHEFDATTSSFRLVTDVKIKAGEQVHLNYGPLGNQRLLQYKGFVIPGNPFDHVDVYLGMDPSADNY--EAKQAVFTRCSQMPTVPFPLIADRLNDRFIATLRVQ 840
            VFS+P   +LSV + +E  +L  +   ++     EDD LA+ L++EK V GD S+W  HI+LLP  +  HNA YF  +E + L GSN+  +AQ M+ +V  DY  +  T+  +    +   +        FS++ Y+WA++ IWSRFVS               +P+ K SFKAMVP FDMLNH P A   H FD  T  F+LV+     AG Q+ +NYGPL N +LL   GFVI GNPFD V+++L MD ++  +  E +Q +        T P+ L+A+  ND  +   R+Q
Sbjct:   63 VFSIPLDSVLSVKSLQEISALQNIAFFQQLTPEREDDQLALALLYEKFVQGDKSKWAKHIELLP--KTYHNALYFEQEEIKALEGSNLFFIAQQMEKKVAADYTSLKETVLLELFENITEGITVDLFDDFFSLDNYKWALSTIWSRFVSLRLDEAPSSKDSSSSVPVAKQSFKAMVPVFDMLNHDPEAEMSHFFDMDTQLFKLVSHQHWNAGTQMFINYGPLSNHKLLLLYGFVIIGNPFDAVEMWLPMDEASTKFYLEKEQFLLINGLDHATNPYELVAEETNDLLLMATRIQ 354          
BLAST of mRNA_S-firma_F_contig11004.1345.1 vs. uniprot
Match: W4G0U4_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0U4_9STRA)

HSP 1 Score: 196 bits (498), Expect = 3.490e-56
Identity = 116/302 (38.41%), Postives = 170/302 (56.29%), Query Frame = 1
Query:    1 QSSKVVFSVPASLLLSVSTAEESLPEVFALRE--ELSLTEDDLLAIHLMHEKHVVGDGSRWKPHIDLLPAGEDVHNAFYFTDDEKRLLAGSNIAHLAQVMQNQVRMDYARIFPTLFRKCALTVLCVVDAAPPRSTFSMNEYRWAIAMIWSRFVSIPL----------GKASFKAMVPFFDMLNHSPTARTRHEFDATTSSFRLVTDVKIKAGEQVHLNYGPLGNQRLLQYKGFVIPGNPFDHVDVYLGMDPSADNYEAKQAVFTR---CSQMPTVPFPLIADRLNDRFIATLRVQRATKAEL 861
            Q+   + S+PA+ LL+V T  +S+     LR+   L L EDD LA  L++E+ V    S+WK H+D++P  +  HN  YFT+DE  +L GSN+ ++A  ++ QV  D+  +  TL       +     A      F++  Y+WA+++IWSRFVSI +            A+ K+MVP FDM NH P A+  H FD TT+SF L +     AG QV++NYG L N +LL   GFV+P NPFD V+++  M     +Y+ K A+ T         + PF L +D +ND  +A+LR+QR T  EL
Sbjct:   44 QAQTTILSIPAASLLNVHTMAQSV-----LRDLVSLPLREDDCLAWFLIYERFV-NPQSKWKRHLDVMP--QAFHNILYFTEDEINMLQGSNVYYVALQLKQQVASDFGELQRTLLPTTLRLLHADHSADDLIRVFTIENYKWALSVIWSRFVSIAIHATAADXXXXXXAAVKSMVPVFDMFNHDPFAQMSHGFDPTTNSFVLRSHQHWPAGSQVYMNYGALPNHKLLTLYGFVLPSNPFDVVELWAPMHEDVPSYDRKLALLTAHGLAEHATSTPFDLYSDSVNDELLASLRIQRLTDTEL 337          
BLAST of mRNA_S-firma_F_contig11004.1345.1 vs. uniprot
Match: A0A024UBV8_9STRA (SET domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UBV8_9STRA)

HSP 1 Score: 193 bits (491), Expect = 3.010e-55
Identity = 117/289 (40.48%), Postives = 160/289 (55.36%), Query Frame = 1
Query:   16 VFSVPASLLLSVSTAEESLPEVFALRE--ELSLTEDDLLAIHLMHEKHVVGDGSRWKPHIDLLPAGEDVHNAFYFTDDEKRLLAGSNIAHLAQVMQNQVRMDYARIFPTLFRKCALTVLCVVDAAPPRSTFSMNEYRWAIAMIWSRFVSIPLGKAS--FKAMVPFFDMLNHSPTARTRHEFDATTSSFRLVTDVKIKAGEQVHLNYGPLGNQRLLQYKGFVIPGNPFDHVDVYLGMDPSADNYEAKQAVFTR---CSQMPTVPFPLIADRLNDRFIATLRVQRATKAEL 861
            + S+PA  LL+V T  +S     ALR+   L L EDD LA  L++E+ V    S+WK H+D+LP     HN  YFT+DE  +L GSN+ ++A  ++ QV  D+A +  TL       +     A    + F++  Y+WA+++IWSRFVS+ L       K+MVP FDM NH P A+  H FD TT++F L +     AG QV +NYG L N +LL   GFV+P NPFD V+++  M   A  Y  K A+ T           PF L  D LND  +A LR+QR    EL
Sbjct:   49 ILSIPAESLLNVHTMTQS-----ALRDLASLPLREDDCLAWFLIYERFV-NPQSKWKRHLDVLP--HSFHNILYFTEDEINMLQGSNVYYVALQLKQQVVSDFAELQQTLLPDTLRLLHAEHSADVLMAVFTLENYKWALSVIWSRFVSVALDAEDNLAKSMVPVFDMFNHDPHAQMSHGFDPTTNAFVLRSHQHWTAGSQVCINYGALPNHKLLTLYGFVLPSNPFDVVELWAPMSDDAPYYNRKLALMTGHGLADHATAAPFELYPDSLNDELLAYLRIQRLDVGEL 329          
BLAST of mRNA_S-firma_F_contig11004.1345.1 vs. uniprot
Match: A0A833SR06_PHYIN (Rubisco LSMT substrate-binding n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SR06_PHYIN)

HSP 1 Score: 192 bits (487), Expect = 4.450e-54
Identity = 113/298 (37.92%), Postives = 163/298 (54.70%), Query Frame = 1
Query:   16 VFSVPASLLLSVSTAEE--SLPEVFALREELSLTEDDLLAIHLMHEKHVVGDGSRWKPHIDLLPAGEDVHNAFYFTDDEKRLLAGSNIAHLAQVMQNQVRMDYARIFPTLFRKCALTVLCVVDAAPPRSTFSMNEYRWAIAMIWSRFVSI-------------------PLGKASFKAMVPFFDMLNHSPTARTRHEFDATTSSFRLVTDVKIKAGEQVHLNYGPLGNQRLLQYKGFVIPGNPFDHVDVYLGMDPSADNY--EAKQAVFTRCSQMPTVPFPLIADRLNDRFIATLRVQ 840
            VFS+P   +LSV + ++  +L  +   ++     EDD LAI L++EK++ GD S+W  HI+LLP  +  HNA YF   E + L GSN+  +AQ M+ +V  DYA +  ++  +    +   +        FS++ Y+WA++ IWSRFVS+                   P+ K SFKAMVP FDMLNH P A   H FD  T  F+LV+     AG Q+ +NYG L N +LL   GFVI GN FD VD++L MD ++  +  E +Q +        T PF L+A+  ND  +   R+Q
Sbjct:   89 VFSIPLDSVLSVKSLQDISALQSITFFQQLTPEREDDQLAIALLYEKYMQGDKSKWAKHIELLP--KTYHNALYFEAGEIKALEGSNLFFIAQQMEEKVASDYAVLKESVLFELFENITEGITVDLFDEIFSLDNYKWALSTIWSRFVSLRLDEAPSEREIEELKGSSLPVAKQSFKAMVPVFDMLNHDPEAEMSHFFDMETQCFKLVSHQHWNAGAQMFINYGALSNHKLLSLYGFVIIGNLFDAVDMWLPMDEASTKFYHEKEQLLLVNGLDHATNPFELVAEETNDLLLMATRIQ 384          
BLAST of mRNA_S-firma_F_contig11004.1345.1 vs. uniprot
Match: A0A8K1C412_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C412_PYTOL)

HSP 1 Score: 189 bits (479), Expect = 3.120e-53
Identity = 112/276 (40.58%), Postives = 155/276 (56.16%), Query Frame = 1
Query:   40 LLSVSTAEESLPEVFALREELSLTEDDLLAIHLMHEKHVVGDGSRWKPHIDLLPAGEDVHNAFYFTDDEKRLLAGSNIAHLAQVMQNQVRMDYARIFPTLFRKCALTVLCVVDAAPPRST------FSMNEYRWAIAMIWSRFVSIPLGKASF-KAMVPFFDMLNHSPTARTRHEFDATTSSFRLVTDVKIKAGEQVHLNYGPLGNQRLLQYKGFVIPGNPFDHVDVYLGMDPSADN-YEAKQAVFTRCS-QMPTVPFPLIADRLNDRFIATLRVQ 840
            +LS   A+ES PE      +    EDD+LA  L++E+ +  D S+W  H+ LLP     HNA YFTD E  +L GS + ++AQ M+  V   +AR+  TLF   A  V   V   P RS       FS+  Y+WA++ IWSRFVS+ +  A+F KAM P FDMLNH P A   H FD  T +F+L +     AG Q+ +NYG L N +LL   GFV+P NPFD V+++L MDPS+ + +E K  +           PF L  D L++  +  +R+Q
Sbjct:   85 VLSWVEAQESSPE------DGVDVEDDVLATTLLYERFIARDKSKWWRHLQLLPT--TYHNALYFTDKEVEMLQGSTVCYIAQQMKTNVDAGFARLKQTLFADIADAV---VTHHPERSIEQVEACFSLENYKWALSTIWSRFVSLQIASATFRKAMAPVFDMLNHDPDAEMSHHFDTETQTFQLTSYQHWSAGSQLCINYGALSNHKLLTLYGFVLPENPFDAVEMWLPMDPSSTSEFETKVKLLEEIDVDHEVTPFELTVDELDELLLIVMRIQ 349          
BLAST of mRNA_S-firma_F_contig11004.1345.1 vs. uniprot
Match: H3GMD8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMD8_PHYRM)

HSP 1 Score: 188 bits (478), Expect = 4.990e-53
Identity = 117/303 (38.61%), Postives = 161/303 (53.14%), Query Frame = 1
Query:   16 VFSVPASLLLSV-STAEESLPEVFALREELSLT-EDDLLAIHLMHEKHVVGDGSRWKPHIDLLPAGEDVHNAFYFTDDEKRLLAGSNIAHLAQVMQNQVRMDYARIFPTLFRKCALTVLCVVDAAPPRSTFSMNEYRWAIAMIWSRFVSI------------------------PLGKASFKAMVPFFDMLNHSPTARTRHEFDATTSSFRLVTDVKIKAGEQVHLNYGPLGNQRLLQYKGFVIPGNPFDHVDVYLGMDPSADNY--EAKQAVFTRCSQMPTVPFPLIADRLNDRFIATLRVQ 840
            VFS+P   +LSV S  E+++ +     ++LS   EDD LAI L++EK V G  S+W  HI+LLP     +NA Y    E   L GSN+  +AQ M+ +V  DYAR+  ++  +    V   ++       FS   Y+WA++ IWSRFVS+                        P+ K SFKAMVP FDMLNH P A   H FD  +  F+LV+     AG Q+ +NYG L N +LL   GFVI GNPFD V+++L MD ++     E +Q + T      T PF L+AD  ND  +   R+Q
Sbjct:   54 VFSIPLDSVLSVKSLQEDAVLQSMEFFQQLSPEREDDQLAIALLYEKFVRGAQSKWAQHIELLP--RTYYNALYLDQSELNALTGSNVFFVAQQMEKKVAQDYARLKESVLLELFENVTEGINFDLFDEFFSFENYKWALSTIWSRFVSLRVDETVSFAEDDKPAEENAKKSDAPVAKQSFKAMVPVFDMLNHDPEAEMSHFFDMASQRFKLVSHQHWNAGAQMFINYGALSNHKLLSLYGFVILGNPFDAVEMWLPMDEASTKLFQEKEQLLLTNGLDHATSPFELVADESNDLLLMAARIQ 354          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11004.1345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G4YQV2_PHYSP1.760e-6242.29Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A485L3E1_9STRA1.530e-5841.67Aste57867_15011 protein n=1 Tax=Aphanomyces stella... [more]
A0A0W8CD61_PHYNI1.330e-5739.12Ribosomal N-lysine methyltransferase set10 n=9 Tax... [more]
A0A2P4WYX0_9STRA3.440e-5741.07Histone-lysine N-methyltransferase n=2 Tax=Phytoph... [more]
W2KAV5_PHYPR3.690e-5738.78Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
W4G0U4_9STRA3.490e-5638.41Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A024UBV8_9STRA3.010e-5540.48SET domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A833SR06_PHYIN4.450e-5437.92Rubisco LSMT substrate-binding n=2 Tax=Phytophthor... [more]
A0A8K1C412_PYTOL3.120e-5340.58Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GMD8_PHYRM4.990e-5338.61Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11004contigS-firma_F_contig11004:329..1232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog67593.Physo128330
PFAMsRubis-subs-bind,SET
Max annot lvl4776|Peronosporales
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Evalue5.58e-59
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota,3Q8SJ@4776|Peronosporales
EC2.1.1.43
DescriptionRubisco LSMT substrate-binding
COG categoryS
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categorysignal peptide
Exons2
Model size861
Cds size861
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.115513-CDS-S-firma_F_contig11004:328..6771622815648.115513-CDS-S-firma_F_contig11004:328..677Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11004 329..677 +
1696949477.5091515-CDS-S-firma_F_contig11004:328..6771696949477.5091515-CDS-S-firma_F_contig11004:328..677Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11004 329..677 +
1622815648.1258395-CDS-S-firma_F_contig11004:720..12321622815648.1258395-CDS-S-firma_F_contig11004:720..1232Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11004 721..1232 +
1696949477.5208738-CDS-S-firma_F_contig11004:720..12321696949477.5208738-CDS-S-firma_F_contig11004:720..1232Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11004 721..1232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11004.1345.1prot_S-firma_F_contig11004.1345.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11004 329..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11004.1345.1

>prot_S-firma_F_contig11004.1345.1 ID=prot_S-firma_F_contig11004.1345.1|Name=mRNA_S-firma_F_contig11004.1345.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=287bp
QSSKVVFSVPASLLLSVSTAEESLPEVFALREELSLTEDDLLAIHLMHEK
HVVGDGSRWKPHIDLLPAGEDVHNAFYFTDDEKRLLAGSNIAHLAQVMQN
QVRMDYARIFPTLFRKCALTVLCVVDAAPPRSTFSMNEYRWAIAMIWSRF
VSIPLGKASFKAMVPFFDMLNHSPTARTRHEFDATTSSFRLVTDVKIKAG
EQVHLNYGPLGNQRLLQYKGFVIPGNPFDHVDVYLGMDPSADNYEAKQAV
FTRCSQMPTVPFPLIADRLNDRFIATLRVQRATKAEL
back to top

mRNA from alignment at S-firma_F_contig11004:329..1232+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11004.1345.1 ID=mRNA_S-firma_F_contig11004.1345.1|Name=mRNA_S-firma_F_contig11004.1345.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=904bp|location=Sequence derived from alignment at S-firma_F_contig11004:329..1232+ (Sphaerotrichia firma ET2_F female)
CAGTCGTCAAAGGTGGTGTTCAGCGTGCCGGCAAGCTTGTTGCTGTCGGT GTCCACCGCGGAGGAAAGCCTCCCGGAGGTGTTTGCGCTGAGGGAAGAAC TGAGCCTGACGGAGGACGACCTGCTGGCCATCCACCTCATGCACGAGAAA CACGTGGTGGGGGACGGCAGCAGGTGGAAGCCGCACATTGACCTCCTGCC CGCGGGCGAGGACGTCCACAACGCGTTTTACTTTACGGACGACGAAAAGC GGCTCCTGGCGGGCTCCAACATTGCCCACCTGGCGCAGGTCATGCAGAAC CAGGTCCGCATGGACTACGCCCGCATTTTCCCGACACTGTTCCGCAAGTG TGAGGCGCTGGGTATCAGGCCACGGTGAGGCGGGCGTGGTAGGTGCGTTG ACTGTGTTATGTGTCGTTGACGCTGCCCCCCCCCGCAGCACGTTTTCCAT GAACGAGTACCGCTGGGCCATTGCCATGATCTGGTCCCGGTTTGTAAGCA TCCCCCTGGGGAAGGCATCCTTCAAGGCCATGGTGCCGTTTTTCGACATG TTGAACCACTCTCCCACCGCCCGCACCCGCCACGAGTTTGATGCCACTAC GTCCAGCTTCCGGCTGGTCACCGACGTCAAGATCAAGGCCGGGGAGCAGG TGCACCTCAACTACGGCCCCCTGGGGAACCAGCGCCTGCTGCAATACAAG GGGTTTGTCATCCCGGGGAACCCCTTTGACCACGTCGACGTGTACCTGGG CATGGACCCCTCCGCCGACAACTACGAAGCCAAGCAAGCCGTGTTCACAC GCTGCAGCCAGATGCCGACGGTGCCCTTCCCCCTGATCGCCGACCGCCTC AACGACCGCTTCATTGCCACCCTGCGCGTCCAGCGGGCCACCAAAGCTGA GCTT
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig11004:329..1232+

>mRNA_S-firma_F_contig11004.1345.1 ID=mRNA_S-firma_F_contig11004.1345.1|Name=mRNA_S-firma_F_contig11004.1345.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1722bp|location=Sequence derived from alignment at S-firma_F_contig11004:329..1232+ (Sphaerotrichia firma ET2_F female)
CAGTCGTCAAAGGTGGTGTTCAGCGTGCCGGCAAGCTTGTTGCTGTCGGT
GTCCACCGCGGAGGAAAGCCTCCCGGAGGTGTTTGCGCTGAGGGAAGAAC
TGAGCCTGACGGAGGACGACCTGCTGGCCATCCACCTCATGCACGAGAAA
CACGTGGTGGGGGACGGCAGCAGGTGGAAGCCGCACATTGACCTCCTGCC
CGCGGGCGAGGACGTCCACAACGCGTTTTACTTTACGGACGACGAAAAGC
GGCTCCTGGCGGGCTCCAACATTGCCCACCTGGCGCAGGTCATGCAGAAC
CAGGTCCGCATGGACTACGCCCGCATTTTCCCGACACTGTTCCGCAAGTC
AGTCGTCAAAGGTGGTGTTCAGCGTGCCGGCAAGCTTGTTGCTGTCGGTG
TCCACCGCGGAGGAAAGCCTCCCGGAGGTGTTTGCGCTGAGGGAAGAACT
GAGCCTGACGGAGGACGACCTGCTGGCCATCCACCTCATGCACGAGAAAC
ACGTGGTGGGGGACGGCAGCAGGTGGAAGCCGCACATTGACCTCCTGCCC
GCGGGCGAGGACGTCCACAACGCGTTTTACTTTACGGACGACGAAAAGCG
GCTCCTGGCGGGCTCCAACATTGCCCACCTGGCGCAGGTCATGCAGAACC
AGGTCCGCATGGACTACGCCCGCATTTTCCCGACACTGTTCCGCAAGTGT
GCGTTGACTGTGTTATGTGTCGTTGACGCTGCCCCCCCCCGCAGCACGTT
TTCCATGAACGAGTACCGCTGGGCCATTGCCATGATCTGGTCCCGGTTTG
TAAGCATCCCCCTGGGGAAGGCATCCTTCAAGGCCATGGTGCCGTTTTTC
GACATGTTGAACCACTCTCCCACCGCCCGCACCCGCCACGAGTTTGATGC
CACTACGTCCAGCTTCCGGCTGGTCACCGACGTCAAGATCAAGGCCGGGG
AGCAGGTGCACCTCAACTACGGCCCCCTGGGGAACCAGCGCCTGCTGCAA
TACAAGGGGTTTGTCATCCCGGGGAACCCCTTTGACCACGTCGACGTGTA
CCTGGGCATGGACCCCTCCGCCGACAACTACGAAGCCAAGCAAGCCGTGT
TCACACGCTGCAGCCAGATGCCGACGGTGCCCTTCCCCCTGATCGCCGAC
CGCCTCAACGACCGCTTCATTGCCACCCTGCGCGTCCAGCGGGCCACCAA
AGCTGAGCTTGTGCGTTGACTGTGTTATGTGTCGTTGACGCTGCCCCCCC
CCGCAGCACGTTTTCCATGAACGAGTACCGCTGGGCCATTGCCATGATCT
GGTCCCGGTTTGTAAGCATCCCCCTGGGGAAGGCATCCTTCAAGGCCATG
GTGCCGTTTTTCGACATGTTGAACCACTCTCCCACCGCCCGCACCCGCCA
CGAGTTTGATGCCACTACGTCCAGCTTCCGGCTGGTCACCGACGTCAAGA
TCAAGGCCGGGGAGCAGGTGCACCTCAACTACGGCCCCCTGGGGAACCAG
CGCCTGCTGCAATACAAGGGGTTTGTCATCCCGGGGAACCCCTTTGACCA
CGTCGACGTGTACCTGGGCATGGACCCCTCCGCCGACAACTACGAAGCCA
AGCAAGCCGTGTTCACACGCTGCAGCCAGATGCCGACGGTGCCCTTCCCC
CTGATCGCCGACCGCCTCAACGACCGCTTCATTGCCACCCTGCGCGTCCA
GCGGGCCACCAAAGCTGAGCTT
back to top