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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 600 |
| Cds size | 393 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815648.0486567-UTR-S-firma_F_contig11003:78..246 | 1622815648.0486567-UTR-S-firma_F_contig11003:78..246 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11003 79..246 + |
| 1696949477.4809446-UTR-S-firma_F_contig11003:78..246 | 1696949477.4809446-UTR-S-firma_F_contig11003:78..246 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11003 79..246 + |
| 1622815648.0618787-UTR-S-firma_F_contig11003:1115..1154 | 1622815648.0618787-UTR-S-firma_F_contig11003:1115..1154 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11003 1116..1154 + |
| 1696949477.4903154-UTR-S-firma_F_contig11003:1115..1154 | 1696949477.4903154-UTR-S-firma_F_contig11003:1115..1154 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig11003 1116..1154 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815648.0728455-CDS-S-firma_F_contig11003:1154..1547 | 1622815648.0728455-CDS-S-firma_F_contig11003:1154..1547 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11003 1155..1547 + |
| 1696949477.4999866-CDS-S-firma_F_contig11003:1154..1547 | 1696949477.4999866-CDS-S-firma_F_contig11003:1154..1547 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig11003 1155..1547 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig11003.1344.1 >prot_S-firma_F_contig11003.1344.1 ID=prot_S-firma_F_contig11003.1344.1|Name=mRNA_S-firma_F_contig11003.1344.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=131bp
MLLVRRASCGGDSRWVAGKAAAAAAAAATATGAGGAGGLPRRWQGRRPLS
SVTVHPAEATATAAAARASGCFLPRADTISRGEAHWARRTWPRRRDCARA
GGGIGGSGCFARPSSSSSSSSSSSLVVAAAG back to topmRNA from alignment at S-firma_F_contig11003:79..1547+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig11003.1344.1 ID=mRNA_S-firma_F_contig11003.1344.1|Name=mRNA_S-firma_F_contig11003.1344.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1469bp|location=Sequence derived from alignment at S-firma_F_contig11003:79..1547+ (Sphaerotrichia firma ET2_F female)
GCTGCTGTGAGTACAAGCAGTGACCCAGCAGCCATCGTAACACCGAGGGG
ACAAAACCGTTGCAGCACGTATCTACTCCCGTAAAAAAGAGGAAGCCACT
AGCTGTACGTGTGCGCGTTCTCTTTGGTTTGGGACTCACGTAAATTTCTA
CGACAAAGGCTGAGAAAGGTGAGTTGTGCTGCGTGCTGCCTACACTGCTG
TCGCTAGGATACACGGCCGTTTGGTTGAGGCAGGCAGCACCGCCATCCAG
CCAAGAGTGGAAAGAAGGCCCTGAAGACGGGTAGTATTGTGCTGCGTGGG
CAGTGAGTAGGAGTTGAGGGGAATTGCTGGCATGCCTGGCGATGCCGCTT
CTCATGTTCTGGCCGCCGCTACTCTCTCCCAGGGCCTCGAAAGTGCGACA
ACTGCCAGCGCCGGCATGGATGTTGTATGTACATGCAGTATATCAATCGT
CGCGGAAGCAGCTTGTCCTCTCGCCCAACAGCAGCAGTACACTCTGCATC
GCCGCCCGGCAGACGAGCGGTCGTTACATCGTATTTCCGGTAGAGGGCGT
TTCCGGCCCAGAGAGAGGCGCACCCGCACGACGTCCGTCTCTCAGTGAAG
TGCCCTGCACCAGACAACAAAGCCAACTACTGCTACTACTGGTGCGTACT
ACTGCTGTAGTAAACATGCAACAGAGTAAAAAAGCCCGCCGCCGCAAACC
CACAACGGGCGAGGCGTGGGAGAGGGTGTACTATATGCATGCCTGGAGGT
GTCGGCAATACAGCAGGCGGTGTCTTGGCTGCTTCATCACGCCAGCCAAC
CGCAGTAGCCGGGTGCAAACTGCAAACCCATGAGTCATGTTCCATTTCTC
CCGAACCTTGCCCTGCTACCGTATTTTTCGCGGTTTCTTCAATTCACCCC
CTCGTCGTACCACCCCAAAAAACCGAAGCTGTGCTTATTCTTTGTATTCT
AGTCGCCTTTCAAGATCGGTATCGCCCCCCTTCGTACGTTCCTCCTCCTG
CTTAACATGCCACACCGCCGTCGTCCGCCTTCCGAAGACCAATAACCGGA
GCAGCCGGAAGAGCAGCAGCAACAGGATGCTGCTGGTGCGTCGGGCCTCT
TGTGGCGGCGACAGCCGGTGGGTCGCGGGAAAGGCTGCAGCAGCAGCGGC
GGCGGCGGCAACGGCAACGGGGGCGGGGGGAGCGGGAGGTCTTCCGCGTC
GGTGGCAAGGGCGAAGACCCTTGAGTTCTGTCACGGTTCATCCAGCAGAA
GCAACAGCAACAGCAGCAGCAGCAAGAGCCTCGGGTTGTTTTCTGCCGAG
GGCCGACACCATCAGCAGGGGCGAGGCGCATTGGGCGCGAAGAACTTGGC
CGCGGCGGCGTGATTGTGCCCGCGCCGGCGGCGGGATTGGGGGTAGCGGA
TGCTTCGCTAGGCCGTCGTCGTCTTCTTCTTCTTCTTCTTCTTCTTCGCT
GGTGGTGGCGGCCGCCGGC back to topCoding sequence (CDS) from alignment at S-firma_F_contig11003:79..1547+ >mRNA_S-firma_F_contig11003.1344.1 ID=mRNA_S-firma_F_contig11003.1344.1|Name=mRNA_S-firma_F_contig11003.1344.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=786bp|location=Sequence derived from alignment at S-firma_F_contig11003:79..1547+ (Sphaerotrichia firma ET2_F female)
ATGCTGCTGGTGCGTCGGGCCTCTTGTGGCGGCGACAGCCGGTGGGTCGC
GGGAAAGGCTGCAGCAGCAGCGGCGGCGGCGGCAACGGCAACGGGGGCGG
GGGGAGCGGGAGGTCTTCCGCGTCGGTGGCAAGGGCGAAGACCCTTGAGT
TCTGTCACGGTTCATCCAGCAGAAGCAACAGCAACAGCAGCAGCAGCAAG
AGCCTCGGGTTGTTTTCTGCCGAGGGCCGACACCATCAGCAGGGGCGAGG
CGCATTGGGCGCGAAGAACTTGGCCGCGGCGGCGTGATTGTGCCCGCGCC
GGCGGCGGGATTGGGGGTAGCGGATGCTTCGCTAGGCCGTCGTCGTCTTC
TTCTTCTTCTTCTTCTTCTTCGCTGGTGGTGGCGGCCGCCGGCATGCTGC
TGGTGCGTCGGGCCTCTTGTGGCGGCGACAGCCGGTGGGTCGCGGGAAAG
GCTGCAGCAGCAGCGGCGGCGGCGGCAACGGCAACGGGGGCGGGGGGAGC
GGGAGGTCTTCCGCGTCGGTGGCAAGGGCGAAGACCCTTGAGTTCTGTCA
CGGTTCATCCAGCAGAAGCAACAGCAACAGCAGCAGCAGCAAGAGCCTCG
GGTTGTTTTCTGCCGAGGGCCGACACCATCAGCAGGGGCGAGGCGCATTG
GGCGCGAAGAACTTGGCCGCGGCGGCGTGATTGTGCCCGCGCCGGCGGCG
GGATTGGGGGTAGCGGATGCTTCGCTAGGCCGTCGTCGTCTTCTTCTTCT
TCTTCTTCTTCTTCGCTGGTGGTGGCGGCCGCCGGC back to top
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