mRNA_S-firma_F_contig11002.1343.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11002.1343.1
Unique NamemRNA_S-firma_F_contig11002.1343.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A6H5JRL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.880e-20
Identity = 53/102 (51.96%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   29 KPGDWECPACGNNCFASKGACNRCGARKPDGAGXXXXXXXXXXXXXXXXX---------------------------NKRPGDWDCPACGNNCFASKSVCNR 253
            +PGDWECP+CGNNCFAS+  CNRC   KP GAG        XXXXXXXXX                           N+RPGDWDCP+CGN+CFAS+ VCNR
Sbjct:   52 RPGDWECPSCGNNCFASRVECNRCQTPKPAGAGGGGYGERGXXXXXXXXXXXXXXXXXXXGYSXXXXXXXXXXXXXYNRRPGDWDCPSCGNHCFASRVVCNR 153          
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A5J4XE95_9CHLO (RNA-binding cabeza n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XE95_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 3.660e-16
Identity = 57/88 (64.77%), Postives = 59/88 (67.05%), Query Frame = 2
Query:   29 KPGDWECPACGNNCFASKGACNRCGARKPDGAGXXXXXXXXXXXXXXXXX-------------NKRPGDWDCPACGNNCFASKSVCNR 253
            +PGDW CP C NNCFASK AC +CGA KP  AGXXXXXXXXXXXXXXXXX               RPGDW CP C N CFASK  CNR
Sbjct:  180 RPGDWPCPGCNNNCFASKSACPKCGAPKPADAGXXXXXXXXXXXXXXXXXXXXXXXXXXPRPKEARPGDWPCPNCNNICFASKDKCNR 267          
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: R1D5J3_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5J3_EMIHU)

HSP 1 Score: 73.6 bits (179), Expect = 5.570e-14
Identity = 50/76 (65.79%), Postives = 55/76 (72.37%), Query Frame = 2
Query:   26 MKPGDWECPACGNNCFASKGACNRCGARKPDGAGXXXXXXXXXXXXXXXXXNKRPGDWDCPACGNNCFASKSVCNR 253
            ++PGDW CP+C  N FASK AC RC   KP G G XXXXXXXXXXXXXX  N RPGDW CP C +N FASK+ C R
Sbjct:   39 VRPGDWTCPSCNANVFASKMACFRCQTPKPGGEGGXXXXXXXXXXXXXXT-NVRPGDWTCPQCNSNVFASKTNCYR 113          
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A8J6C3G0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C3G0_DIALT)

HSP 1 Score: 72.8 bits (177), Expect = 1.490e-13
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 2
Query:   26 MKPGDWECPACGNNCFASKGACNRCGARKPD--GAGXXXXXXXXXXXXXXXXXNKRPGDWDCPACGNNCFASKSVCNR 253
            ++PGDW CP CG N FASK +C RC   KP   G           XXXX    + RPGDW+CP CG N FASK+ C R
Sbjct:   26 VRPGDWSCPTCGANVFASKNSCFRCQTPKPGMGGDAQQGMFRGGGXXXXVGGGDVRPGDWNCPGCGANVFASKNSCFR 103          
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A7S3UM75_OXYMA (Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3UM75_OXYMA)

HSP 1 Score: 69.7 bits (169), Expect = 1.720e-12
Identity = 35/77 (45.45%), Postives = 39/77 (50.65%), Query Frame = 2
Query:   23 GMKPGDWECPACGNNCFASKGACNRCGARKPDGAGXXXXXXXXXXXXXXXXXNK--RPGDWDCPACGNNCFASKSVC 247
            G KPGDW CP C +N FASK +C RC   KP  +                  N   RPGDW C ACG  CFASK+ C
Sbjct:  155 GQKPGDWICPGCQSNVFASKTSCFRCSTPKPAESAVSSGFMFHQPSFGGHSSNPDMRPGDWTCSACGTLCFASKTNC 231          
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A7S0J0T5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J0T5_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 1.970e-11
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   29 KPGDWECPACGNNCFASKGACNRCGARKPDGAGXXXXXXXXXXXXXXXXX-----------NKRPGDWDCPACGNNCFASKSVCNR 253
            +PGDW CP C  N FASK +C +CG  KP G G  XXXXXXXXXXXXXXX           + RPGDW C +CG N FASK  C R
Sbjct:   31 RPGDWTCPNCAANVFASKSSCFKCGTPKPMGGGSMXXXXXXXXXXXXXXXXXXXXXXXXXXDVRPGDWTCGSCGANVFASKDSCFR 116          
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A8J2AM57_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2AM57_9DINO)

HSP 1 Score: 66.2 bits (160), Expect = 8.220e-11
Identity = 33/77 (42.86%), Postives = 39/77 (50.65%), Query Frame = 2
Query:   26 MKPGDWECPACGNNCFASKGACNRCGARK--PDGAGXXXXXXXXXXXXXXXXXN-KRPGDWDCPACGNNCFASKSVC 247
            ++PGDW CP C  N FASK +C +CG  +  P GAG                 +  RPGDW CP C  N FASK  C
Sbjct:  545 VRPGDWACPKCNTNVFASKDSCFKCGYSRSAPGGAGGGKSAASKGKGSGKQGSDIVRPGDWPCPKCNTNVFASKDSC 621          
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A6H5L0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U7_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.140e-10
Identity = 27/35 (77.14%), Postives = 28/35 (80.00%), Query Frame = 2
Query:   23 GMKPGDWECPACGNNCFASKGACNRCGARKPDGAG 127
            GMKPGDWECP+CGNNCFASK AC RCG  KP   G
Sbjct:  427 GMKPGDWECPSCGNNCFASKSACYRCGTAKPTPGG 461          
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: D7G1J2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J2_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.580e-10
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 2
Query:   23 GMKPGDWECPACGNNCFASKGACNRCGARKP 115
            GMKPGDWECP+CGNNCFASK AC RCG  KP
Sbjct:  504 GMKPGDWECPSCGNNCFASKSACYRCGTAKP 534          
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A7S2BMV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BMV1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.710e-10
Identity = 34/82 (41.46%), Postives = 37/82 (45.12%), Query Frame = 2
Query:   26 MKPGDWECPACGNNCFASKGACNRCGARKP------DGAGXXXXXXXXXXXXXXXXXNKRPGDWDCPACGNNCFASKSVCNR 253
            ++PGDW CP C  N FASK  C RC   KP      +  G                 N RPGDW C  C  N FASKS C R
Sbjct:   16 VRPGDWTCPKCQANVFASKSHCFRCDEPKPHFGGEPNEGGDVMMEGGGAPRSFDPPSNVRPGDWQCNQCQANVFASKSNCFR 97          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRL5_9PHAE1.880e-2051.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5J4XE95_9CHLO3.660e-1664.77RNA-binding cabeza n=1 Tax=Trebouxia sp. A1-2 TaxI... [more]
R1D5J3_EMIHU5.570e-1465.79Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A8J6C3G0_DIALT1.490e-1350.00Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S3UM75_OXYMA1.720e-1245.45Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis m... [more]
A0A7S0J0T5_9EUKA1.970e-1156.98Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A8J2AM57_9DINO8.220e-1142.86Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A6H5L0U7_9PHAE1.140e-1077.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J2_ECTSI1.580e-1083.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BMV1_9STRA1.710e-1041.46Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11002contigS-firma_F_contig11002:1931..2453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.988528-CDS-S-firma_F_contig11002:1930..20261622815647.988528-CDS-S-firma_F_contig11002:1930..2026Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11002 1931..2026 +
1696949477.4581568-CDS-S-firma_F_contig11002:1930..20261696949477.4581568-CDS-S-firma_F_contig11002:1930..2026Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11002 1931..2026 +
1622815648.0059686-CDS-S-firma_F_contig11002:2294..24531622815648.0059686-CDS-S-firma_F_contig11002:2294..2453Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11002 2295..2453 +
1696949477.4689984-CDS-S-firma_F_contig11002:2294..24531696949477.4689984-CDS-S-firma_F_contig11002:2294..2453Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11002 2295..2453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11002.1343.1prot_S-firma_F_contig11002.1343.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11002 1931..2453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11002.1343.1

>prot_S-firma_F_contig11002.1343.1 ID=prot_S-firma_F_contig11002.1343.1|Name=mRNA_S-firma_F_contig11002.1343.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=85bp
WRWRWRRRHEARGLGVSRVWQQLLRQQGGLQPLRREKAGRSGRRWVFHGR
RRQRRRRRGKQTARRLGLSRLREQLLREQVGLQQV
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mRNA from alignment at S-firma_F_contig11002:1931..2453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11002.1343.1 ID=mRNA_S-firma_F_contig11002.1343.1|Name=mRNA_S-firma_F_contig11002.1343.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=523bp|location=Sequence derived from alignment at S-firma_F_contig11002:1931..2453+ (Sphaerotrichia firma ET2_F female)
TGGCGGTGGCGGTGGCGGCGGCGGCATGAAGCCCGGGGACTGGGAGTGTC CCGCGTGTGGCAACAACTGCTTCGCCAGCAAGGGGGCCTGCAACCGGTGG GTGCATGTTTTTTTCGGCCTTTCCCTCTGAGTGTTTCCGGCGAATCGATC GACCGAACGGCCACAACCATGGAACAGCCACAAGACAGGCGATTCTTTGA TTATTTGCGCCTTTTCTTGGCATGCTCGGCTCGGACGCTTCTTCCTCCTT CTTCTCTCCTCGTGCTCCGGTCTTCGCTGTGGTGCCATCCCGACTACTGT TGTTTGCGTGCGTGGATGTGTGTTCTCCTCCACACACACCCCTGTGATTC CCTCCACAAAATAGTTGCGGCGCGAGAAAGCCGGACGGAGCGGGCGGCGG TGGGTTTTCCATGGGAGGAGGCGGCAGCGGCGGCGGCGGCGGGGGAAACA AACGGCCCGGAGATTGGGATTGTCCCGCCTGCGGGAACAACTGCTTCGCG AGCAAGTCGGTCTGCAACAGGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig11002:1931..2453+

>mRNA_S-firma_F_contig11002.1343.1 ID=mRNA_S-firma_F_contig11002.1343.1|Name=mRNA_S-firma_F_contig11002.1343.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=510bp|location=Sequence derived from alignment at S-firma_F_contig11002:1931..2453+ (Sphaerotrichia firma ET2_F female)
TGGCGGTGGCGGTGGCGGCGGCGGCATGAAGCCCGGGGACTGGGAGTGTC
CCGCGTGTGGCAACAACTGCTTCGCCAGCAAGGGGGCCTGCAACCGTGGC
GGTGGCGGTGGCGGCGGCGGCATGAAGCCCGGGGACTGGGAGTGTCCCGC
GTGTGGCAACAACTGCTTCGCCAGCAAGGGGGCCTGCAACCGTTGCGGCG
CGAGAAAGCCGGACGGAGCGGGCGGCGGTGGGTTTTCCATGGGAGGAGGC
GGCAGCGGCGGCGGCGGCGGGGGAAACAAACGGCCCGGAGATTGGGATTG
TCCCGCCTGCGGGAACAACTGCTTCGCGAGCAAGTCGGTCTGCAACAGGT
GTTGCGGCGCGAGAAAGCCGGACGGAGCGGGCGGCGGTGGGTTTTCCATG
GGAGGAGGCGGCAGCGGCGGCGGCGGCGGGGGAAACAAACGGCCCGGAGA
TTGGGATTGTCCCGCCTGCGGGAACAACTGCTTCGCGAGCAAGTCGGTCT
GCAACAGGTG
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