mRNA_S-firma_F_contig11002.1343.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A6H5JRL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL5_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.880e-20 Identity = 53/102 (51.96%), Postives = 60/102 (58.82%), Query Frame = 2
Query: 29 KPGDWECPACGNNCFASKGACNRCGARKPDGAGXXXXXXXXXXXXXXXXX---------------------------NKRPGDWDCPACGNNCFASKSVCNR 253
+PGDWECP+CGNNCFAS+ CNRC KP GAG XXXXXXXXX N+RPGDWDCP+CGN+CFAS+ VCNR
Sbjct: 52 RPGDWECPSCGNNCFASRVECNRCQTPKPAGAGGGGYGERGXXXXXXXXXXXXXXXXXXXGYSXXXXXXXXXXXXXYNRRPGDWDCPSCGNHCFASRVVCNR 153
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A5J4XE95_9CHLO (RNA-binding cabeza n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XE95_9CHLO) HSP 1 Score: 81.3 bits (199), Expect = 3.660e-16 Identity = 57/88 (64.77%), Postives = 59/88 (67.05%), Query Frame = 2
Query: 29 KPGDWECPACGNNCFASKGACNRCGARKPDGAGXXXXXXXXXXXXXXXXX-------------NKRPGDWDCPACGNNCFASKSVCNR 253
+PGDW CP C NNCFASK AC +CGA KP AGXXXXXXXXXXXXXXXXX RPGDW CP C N CFASK CNR
Sbjct: 180 RPGDWPCPGCNNNCFASKSACPKCGAPKPADAGXXXXXXXXXXXXXXXXXXXXXXXXXXPRPKEARPGDWPCPNCNNICFASKDKCNR 267
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: R1D5J3_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5J3_EMIHU) HSP 1 Score: 73.6 bits (179), Expect = 5.570e-14 Identity = 50/76 (65.79%), Postives = 55/76 (72.37%), Query Frame = 2
Query: 26 MKPGDWECPACGNNCFASKGACNRCGARKPDGAGXXXXXXXXXXXXXXXXXNKRPGDWDCPACGNNCFASKSVCNR 253
++PGDW CP+C N FASK AC RC KP G G XXXXXXXXXXXXXX N RPGDW CP C +N FASK+ C R
Sbjct: 39 VRPGDWTCPSCNANVFASKMACFRCQTPKPGGEGGXXXXXXXXXXXXXXT-NVRPGDWTCPQCNSNVFASKTNCYR 113
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A8J6C3G0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C3G0_DIALT) HSP 1 Score: 72.8 bits (177), Expect = 1.490e-13 Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 2
Query: 26 MKPGDWECPACGNNCFASKGACNRCGARKPD--GAGXXXXXXXXXXXXXXXXXNKRPGDWDCPACGNNCFASKSVCNR 253
++PGDW CP CG N FASK +C RC KP G XXXX + RPGDW+CP CG N FASK+ C R
Sbjct: 26 VRPGDWSCPTCGANVFASKNSCFRCQTPKPGMGGDAQQGMFRGGGXXXXVGGGDVRPGDWNCPGCGANVFASKNSCFR 103
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A7S3UM75_OXYMA (Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3UM75_OXYMA) HSP 1 Score: 69.7 bits (169), Expect = 1.720e-12 Identity = 35/77 (45.45%), Postives = 39/77 (50.65%), Query Frame = 2
Query: 23 GMKPGDWECPACGNNCFASKGACNRCGARKPDGAGXXXXXXXXXXXXXXXXXNK--RPGDWDCPACGNNCFASKSVC 247
G KPGDW CP C +N FASK +C RC KP + N RPGDW C ACG CFASK+ C
Sbjct: 155 GQKPGDWICPGCQSNVFASKTSCFRCSTPKPAESAVSSGFMFHQPSFGGHSSNPDMRPGDWTCSACGTLCFASKTNC 231
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A7S0J0T5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J0T5_9EUKA) HSP 1 Score: 65.1 bits (157), Expect = 1.970e-11 Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 2
Query: 29 KPGDWECPACGNNCFASKGACNRCGARKPDGAGXXXXXXXXXXXXXXXXX-----------NKRPGDWDCPACGNNCFASKSVCNR 253
+PGDW CP C N FASK +C +CG KP G G XXXXXXXXXXXXXXX + RPGDW C +CG N FASK C R
Sbjct: 31 RPGDWTCPNCAANVFASKSSCFKCGTPKPMGGGSMXXXXXXXXXXXXXXXXXXXXXXXXXXDVRPGDWTCGSCGANVFASKDSCFR 116
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A8J2AM57_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2AM57_9DINO) HSP 1 Score: 66.2 bits (160), Expect = 8.220e-11 Identity = 33/77 (42.86%), Postives = 39/77 (50.65%), Query Frame = 2
Query: 26 MKPGDWECPACGNNCFASKGACNRCGARK--PDGAGXXXXXXXXXXXXXXXXXN-KRPGDWDCPACGNNCFASKSVC 247
++PGDW CP C N FASK +C +CG + P GAG + RPGDW CP C N FASK C
Sbjct: 545 VRPGDWACPKCNTNVFASKDSCFKCGYSRSAPGGAGGGKSAASKGKGSGKQGSDIVRPGDWPCPKCNTNVFASKDSC 621
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A6H5L0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U7_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 1.140e-10 Identity = 27/35 (77.14%), Postives = 28/35 (80.00%), Query Frame = 2
Query: 23 GMKPGDWECPACGNNCFASKGACNRCGARKPDGAG 127
GMKPGDWECP+CGNNCFASK AC RCG KP G
Sbjct: 427 GMKPGDWECPSCGNNCFASKSACYRCGTAKPTPGG 461
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: D7G1J2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J2_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 1.580e-10 Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 2
Query: 23 GMKPGDWECPACGNNCFASKGACNRCGARKP 115
GMKPGDWECP+CGNNCFASK AC RCG KP
Sbjct: 504 GMKPGDWECPSCGNNCFASKSACYRCGTAKP 534
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Match: A0A7S2BMV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BMV1_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.710e-10 Identity = 34/82 (41.46%), Postives = 37/82 (45.12%), Query Frame = 2
Query: 26 MKPGDWECPACGNNCFASKGACNRCGARKP------DGAGXXXXXXXXXXXXXXXXXNKRPGDWDCPACGNNCFASKSVCNR 253
++PGDW CP C N FASK C RC KP + G N RPGDW C C N FASKS C R
Sbjct: 16 VRPGDWTCPKCQANVFASKSHCFRCDEPKPHFGGEPNEGGDVMMEGGGAPRSFDPPSNVRPGDWQCNQCQANVFASKSNCFR 97 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11002.1343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig11002.1343.1 >prot_S-firma_F_contig11002.1343.1 ID=prot_S-firma_F_contig11002.1343.1|Name=mRNA_S-firma_F_contig11002.1343.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=85bp WRWRWRRRHEARGLGVSRVWQQLLRQQGGLQPLRREKAGRSGRRWVFHGRback to top mRNA from alignment at S-firma_F_contig11002:1931..2453+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig11002.1343.1 ID=mRNA_S-firma_F_contig11002.1343.1|Name=mRNA_S-firma_F_contig11002.1343.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=523bp|location=Sequence derived from alignment at S-firma_F_contig11002:1931..2453+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig11002:1931..2453+ >mRNA_S-firma_F_contig11002.1343.1 ID=mRNA_S-firma_F_contig11002.1343.1|Name=mRNA_S-firma_F_contig11002.1343.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=510bp|location=Sequence derived from alignment at S-firma_F_contig11002:1931..2453+ (Sphaerotrichia firma ET2_F female)back to top |