mRNA_S-firma_F_contig11000.1342.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11000.1342.1
Unique NamemRNA_S-firma_F_contig11000.1342.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig11000.1342.1 vs. uniprot
Match: D7FRA5_ECTSI (Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA5_ECTSI)

HSP 1 Score: 426 bits (1096), Expect = 1.250e-145
Identity = 216/300 (72.00%), Postives = 245/300 (81.67%), Query Frame = 1
Query:   19 RTATFERASGDTVEREYDMLVGADGVNSRVRKCLEENLPDFTVRQREDHMQFKTISIPIMGMEGADESWKTLFHTSNSKTGCLIGAATKRGTITAVIILPGEGKTSFGALMKTPQDVRDFFGKYYPRAFGDEGPSEEIAKDFLERRPQRLRSTYCSSLTHGNVVLIGDAGHSMWASLGQGVNAAMEDCKVFAQVLESAAEGKASDQAVSVPTLLAAYNERRFEDALAAVTLSEGGMGGARTVRFRFAATMLVTMVLHKTLGLLAPKVFAPPALMEI-GTK-PYGDISRGMKREAAVTRAL 912
            R ATFER +GD VE EYDML+GADGVNSRVRK LEEN+PDFTVRQRED M FKTI IPIM MEGADE WK  FH +NS  GC+I      G +TA ++LP EGKTSF ALMKT QDVRDFFG YYP AFG EGPSEE+AK+FLERR Q+LRSTYCS L HG++ LIGDA HSMWASLGQGVNAA+EDC+VFAQVL+SA EGKA  QAV VP +L AYNERRFEDA+A   LSE GMGGAR++R  FAA +L+T++L+KTLGLLAPKVF PP+LM I G K  YG+I RG+KREA VT+AL
Sbjct:  145 RVATFERGNGDVVESEYDMLIGADGVNSRVRKELEENVPDFTVRQREDPMAFKTILIPIMNMEGADEGWKKRFHVTNSDIGCIIAPPRSDGMLTATVVLPSEGKTSFDALMKTTQDVRDFFGHYYPSAFGHEGPSEEVAKEFLERRTQQLRSTYCSRLAHGSIFLIGDAAHSMWASLGQGVNAALEDCQVFAQVLDSATEGKAVGQAVDVPKVLEAYNERRFEDAVAVCELSEEGMGGARSMRPAFAAQLLMTVLLNKTLGLLAPKVFTPPSLMAISGNKMSYGEILRGVKREATVTKAL 444          
BLAST of mRNA_S-firma_F_contig11000.1342.1 vs. uniprot
Match: D8LSX9_ECTSI (Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX9_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.910e-69
Identity = 110/152 (72.37%), Postives = 120/152 (78.95%), Query Frame = 1
Query:    1 SPSSWSRTATFERASGDTVEREYDMLVGADGVNSRVRKCLEENLPDFTVRQREDHMQFKTISIPIMGMEGADESWKTLFHTSNSKTGCLIGAATKRGTITAVIILPGEGKTSFGALMKTPQDVRDFFGKYYPRAFGDEGPSEEIAKDFLERR 456
            SPSS  R A FER +GD VE  YDMLVGADGVNSRVRK LEE++PDFTVRQREDHM FKTI IPIMGME ADESWK  FH  NS+ GC+  A    G +TAV+ILP  GKTSFGALMKT QDVR FFG++YP AFG EGPS E+AKDF ERR
Sbjct:    7 SPSSRGRVAIFERGNGDVVEVGYDMLVGADGVNSRVRKSLEESVPDFTVRQREDHMAFKTIEIPIMGMEEADESWKERFHVINSEVGCIGAAPRPGGKLTAVVILPSSGKTSFGALMKTTQDVRGFFGRHYPSAFGGEGPSVEVAKDFHERR 158          
BLAST of mRNA_S-firma_F_contig11000.1342.1 vs. uniprot
Match: D8LSY0_ECTSI (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY0_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.100e-56
Identity = 98/158 (62.03%), Postives = 123/158 (77.85%), Query Frame = 1
Query:  451 RRPQRLRSTYCSSLTHGNVVLIGDAGHSMWASLGQGVNAAMEDCKVFAQVLESAAEGKASD-QAVSVPTLLAAYNERRFEDALAAVTLSEGGMGGARTVRFRFAATMLVTMVLHKTLGLLAPKVFAPPALMEIGT--KPYGDISRGMKREAAVTRALV 915
            RR Q+LRSTYCS L HG +VLIGDA HSMWASLGQGVN+A+EDC+V AQVL+SAAEG+A+  Q + VP  L A+NE+R EDA AA  LSE GMGGART R  FAA + +T++LHKTLG +AP++F PP++M + +  K YGDI RG++RE AV   L+
Sbjct:    5 RRTQQLRSTYCSRLAHGRIVLIGDAAHSMWASLGQGVNSALEDCRVLAQVLDSAAEGEAAAAQGIDVPGALEAFNEQRLEDATAACVLSERGMGGARTFRPMFAARLYLTVLLHKTLGRVAPEMFTPPSIMTVNSADKRYGDILRGVEREDAVASGLL 162          
BLAST of mRNA_S-firma_F_contig11000.1342.1 vs. uniprot
Match: A0A7S3BYE2_9VIRI (Hypothetical protein n=2 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BYE2_9VIRI)

HSP 1 Score: 145 bits (366), Expect = 2.220e-37
Identity = 104/284 (36.62%), Postives = 145/284 (51.06%), Query Frame = 1
Query:   25 ATFERASGDTVER-EYDMLVGADGVNSRVRKCLEENLPDFTVRQREDHMQFKTISIPIMGMEGADESWKTLFHTSNSKTGCLIGAATKR-GTITAVIILPGEGKTSFGALMKTPQDVRDFFGKYYPRAF-GDEGPSEEIAKDFLERRPQ----RLRSTYCSSLTHGNVVLIGDAGHSMWASLGQGVNAAMEDCKVFAQ-VLESAAEGKASDQAVSVPTLLAAYNERRFEDALAAVTLSEGGMGGA--RTVRFRFAATMLVTMVLHKTLGLLAPKVFAPPALMEI 846
            A F+ + G + E  +YD+LVGADG++S VR  +E  L DF   QR D M +K + +P  G E     + T   +  S+  C I A     GT+  V++LP EG  +FG+L    +  R F  K +  AF GD+      A+    +RP       R+T     T+G V L GD+G SMWASLGQG N A+E     A+ V + A     +  A  +   L AY      +  AAV LSEGGMG +  RT+   F A ++ T+ L K  G L  +   PPA+M+I
Sbjct:   23 AVFQSSEGHSEEVVKYDLLVGADGIHSSVRGAMEAQLDDFAATQRSDFMLYKPLPVPAPGAEERQGCFNTWVASDASELNCSILAPPNADGTLAGVLLLPEEGDVTFGSLGDDVEANRAFLAKNFSEAFNGDQAALLAAAECLAAQRPSVGGLSTRTTSLVDPTNG-VALCGDSGGSMWASLGQGCNCALESAVALAESVGDVATTAGGAGTARKIKEGLLAYERAHHPNVEAAVELSEGGMGSSKRRTMSRSFMALIVTTLFLSKAFGFLGAR---PPAIMQI 302          
BLAST of mRNA_S-firma_F_contig11000.1342.1 vs. uniprot
Match: A0A0V7ZJA7_9CYAN (Uncharacterized protein n=1 Tax=Mastigocoleus testarum BC008 TaxID=371196 RepID=A0A0V7ZJA7_9CYAN)

HSP 1 Score: 144 bits (364), Expect = 3.310e-36
Identity = 100/296 (33.78%), Postives = 156/296 (52.70%), Query Frame = 1
Query:   19 RTATFERASGDTVEREYDMLVGADGVNSRVRKCLEENLPDFTVRQREDHMQFKTISI-PIMGMEGADESWKTLFHTSNS-KTGCLIGAATKRGTITAVIILPGEGKTSFGALMKTPQDVRDFFGKYYPRAFGDEGPSEEIAKDFLERRPQRLR-STYCSSLTHGN-VVLIGDAGHSMWASLGQGVNAAMEDCKVFAQVLESAAEGKASDQAVSVPTLLAAYNERRFEDALAAVTLSEGGMGG-ARTVRFRFAATMLVTMVLHKTLGLLAPKVFAPPALMEIGTKP--YGDISRGMK 885
            + ATF + + D +ER +D+LVGADGV S VR  +E+    F+ +Q  D M FK   +  +  +  A   W   FHT  S +   ++   +  G++  ++I+P EG+ +F  L KT  ++   F + +P     +   E+ AK  LE++P     +T CSSL  G+ VVL+GDAGHS+WASLGQG N A+E C + A+ LE        D   ++P    AY  +R  D  A   +SE G+G   R ++  F   ++   + H+ L    P +F  PA+ +IG     Y +I + M+
Sbjct:  156 KLATFHKEN-DCIERNFDLLVGADGVFSTVRVLMEKYFDGFSCQQNFDKMMFKVCPLGKVTELPDAQPQWDKCFHTWPSHEPVTILAPPSSDGSLNGILIMPPEGEFTFDKL-KTEAELEALFQEKFPDILAGKSLPEDWAKYLLEQKPSYGGITTICSSLHGGDCVVLVGDAGHSVWASLGQGCNVALESCVILARTLEK----YNGDLTKALP----AYTIKRKPDTDANARMSEQGLGNNKRVIKTLFFTKLMAISLFHQIL----PSLFKKPAIFQIGQPDVRYSEIEQQMQ 437          
BLAST of mRNA_S-firma_F_contig11000.1342.1 vs. uniprot
Match: B0C0P2_ACAM1 (Kynurenine 3-monooxygenase, putative n=3 Tax=Acaryochloris TaxID=155977 RepID=B0C0P2_ACAM1)

HSP 1 Score: 144 bits (362), Expect = 6.590e-36
Identity = 101/301 (33.55%), Postives = 163/301 (54.15%), Query Frame = 1
Query:   19 RTATFERASGDTVEREYDMLVGADGVNSRVRKCLEENLPDFTVRQREDHMQFKTISIPIM-GMEGADESWKTLFHT-SNSKTGCLIGAATKRGTITAVIILPGEGKTSFGALMKTPQDVRDFFGKYYPRAFGD---EGPSEEIAKDFLERRPQRLR-STYCSSLTHGN-VVLIGDAGHSMWASLGQGVNAAMEDCKVFAQVLESAAEGKASDQAVSVPTLLAAYNERRFEDALAAVTLSEGGMGG-ARTVRFRFAATMLVTMVLHKTLGLLAPKVFAPPALMEIGTK--PYGDISRGMKRE 891
            +TA F+    D  ++ +D+L+GADGV S VR  +E  +  F V+Q +D+M +K   +     + GA+E W   FHT  N++   L+   +  G++  V+ILP  G  ++  L ++  D+   F + +P  F +    G   + A+D L ++      +T C+    G+ VVL+GDA HS+W SLGQG N A+E C++FA++L   A+ K  D ++++P    AY E R  D  A   LSE G GG  R     F + +++ M LHK    L P+ F   AL ++G    PY +I + ++R+
Sbjct:  155 KTALFQ-GKQDQNQQTFDLLIGADGVYSTVRTSMESQIQGFEVQQNQDNMMYKICDLGFAKNLPGAEEKWAESFHTWPNAQPLTLLAPPSTDGSLKGVLILPQVGDITYETL-QSEADILALFQEKFPDVFPNLEQTGLPSQFAQDLLSQKAAHGGITTQCNQFEGGDCVVLLGDAAHSVWPSLGQGCNVALESCRIFAEIL---AQTK-GDLSLALP----AYTEARKPDTDAVAQLSEIGFGGNKRASSLLFISKVVILMFLHK----LLPRWFQKYALFQLGDADVPYSNIWQQVQRQ 441          
BLAST of mRNA_S-firma_F_contig11000.1342.1 vs. uniprot
Match: UPI001F2C4A8C (FAD-dependent monooxygenase n=2 Tax=Acaryochloris TaxID=155977 RepID=UPI001F2C4A8C)

HSP 1 Score: 142 bits (358), Expect = 2.180e-35
Identity = 103/309 (33.33%), Postives = 162/309 (52.43%), Query Frame = 1
Query:   19 RTATFERASGDTVEREYDMLVGADGVNSRVRKCLEENLPDFTVRQREDHMQFKTISIPIM-GMEGADESWKTLFHT-SNSKTGCLIGAATKRGTITAVIILPGEGKTSFGALMKTPQDVRDFFGKYYPRAF---GDEGPSEEIAKDFLERRPQRLR-STYCSSLTHGN-VVLIGDAGHSMWASLGQGVNAAMEDCKVFAQVLESAAEGKASDQAVSVPTLLAAYNERRFEDALAAVTLSEGGMGG-ARTVRFRFAATMLVTMVLHKTLGLLAPKVFAPPALMEIGTK--PYGDISRGMKREAAVTRALV 915
            +TA F+    D  ++ +D+L+GADGV S VR  +E  L  F VRQ +D M +K   +     + G ++ W   FHT  N++   L+   +  G++  V+ILP  G  ++  + +T  D+   F + +P  F      G   + A+D L ++      +T C+    G+ VVL+GDA HS+W SLGQG N A+E C++FA+VL   A+ K  D ++++P    AY   R  D  A   LSE G GG  R     F A +++ M LHK    L P+ F   AL ++G    PY  I + ++R+ +  R ++
Sbjct:  147 KTALFQ-GKQDQQQQNFDLLIGADGVFSTVRTSMESQLQGFEVRQNQDSMMYKICDLGFAKDLPGVEQKWAESFHTWPNAQPLTLLAPPSTDGSLKGVLILPQAGDITYETI-QTEADILALFKEKFPDVFPSLDQAGLPPQFAQDLLSQKAAHGGITTQCNQFEGGDCVVLLGDAAHSVWPSLGQGCNVALESCRIFAEVL---AQTK-GDLSLALP----AYTAARKPDTDAIARLSEIGFGGNKRASNILFIAKVVILMFLHK----LLPRWFHKYALFQLGDADVPYSKIWQQVQRQNSQLRLVL 441          
BLAST of mRNA_S-firma_F_contig11000.1342.1 vs. uniprot
Match: UPI001BAE8264 (FAD-dependent monooxygenase n=2 Tax=Acaryochloris TaxID=155977 RepID=UPI001BAE8264)

HSP 1 Score: 142 bits (358), Expect = 2.320e-35
Identity = 105/296 (35.47%), Postives = 153/296 (51.69%), Query Frame = 1
Query:   19 RTATFERASGDTVEREYDMLVGADGVNSRVRKCLEENLPDFTVRQREDHMQFKTISIPIM-GMEGADESWKTLFHT-SNSKTGCLIGAATKRGTITAVIILPGEGKTSFGALMKTPQDVRDFFGKYYPRAFGD---EGPSEEIAKDFLERRPQRLR-STYCSSLTHGN-VVLIGDAGHSMWASLGQGVNAAMEDCKVFAQVLESAAEGKASDQAVSVPTLLAAYNERRFEDALAAVTLSEGGMGG-ARTVRFRFAATMLVTMVLHKTLGLLAPKVFAPPALMEIGTK--PYGDISR 876
            ++A F+ ASG   E+ +D+LVGADG++S VR  +   L  F VRQ  D+M +K  ++ +   + GA   W   FH    ++   +    +  G I AV+ILP EG+ +F  + +T  D+   F    P  F +    G   + A+D L ++      +T C+    G+ VVL+GDA HS+W SLGQG NAA+E C++FA+ L  A      D ++++P    AY   R  D  A   LSE G GG  R     F A +   M++HK    L PK F   AL ++G    PY DI R
Sbjct:  147 KSALFQEASGQHEEK-FDLLVGADGISSTVRHSMSSQLQGFEVRQHADNMMYKICNLGLAENLPGATAGWADAFHVWPGAEPVTMAAPPSADGFIRAVLILPQEGEITFDTI-QTEADISALFKAKLPVVFHNLDQTGLPPDFAQDLLSQKAAHGGFTTLCNRFEDGDSVVLLGDAAHSIWPSLGQGCNAALESCRIFAERLAQAQ----GDLSLALP----AYTRVRKPDTDAVARLSEIGFGGNKRASNSLFMAKVSTLMLMHK----LLPKWFKGYALFQMGDADVPYADIWR 428          
BLAST of mRNA_S-firma_F_contig11000.1342.1 vs. uniprot
Match: A0A3C1RTQ1_9CYAN (FAD-dependent monooxygenase n=3 Tax=unclassified Planktothrix TaxID=2648599 RepID=A0A3C1RTQ1_9CYAN)

HSP 1 Score: 142 bits (357), Expect = 2.810e-35
Identity = 95/287 (33.10%), Postives = 145/287 (50.52%), Query Frame = 1
Query:   19 RTATFERASGDTVEREYDMLVGADGVNSRVRKCLEENLPDFTVRQREDHMQFKTISI-PIMGMEGADESWKTLFHT-SNSKTGCLIGAATKRGTITAVIILPGEGKTSFGALMKTPQDVRDFFGKYYPRAFGDEGPSEEIAKDFLERRPQRLR-STYCSSLTHGN-VVLIGDAGHSMWASLGQGVNAAMEDCKVFAQVLESAAEGKASDQAVSVPTLLAAYNERRFEDALAAVTLSEGGMGG-ARTVRFRFAATMLVTMVLHKTLGLLAPKVFAPPALMEIGTKPYG 864
            + ATF+      V + +D+LVGADGV S VR+ + +   +F+  Q  D M FK   +        +   W+  FHT  N++   ++      GT+T V+ILP + + +F  + KT  D+   F   +P  F  +   ++  +D L ++      +T C+    GN VVL+GDA HS+WASLGQG N A+E C++ A++LE+           ++PT L AY   R  D  A   LSE G GG  R     F A ++   + HK    L PK+F  PAL+++     G
Sbjct:  147 KLATFQ-IEEKQVSQSFDLLVGADGVFSTVREIIVQQFDEFSADQNHDQMTFKICQLGKATNFTNSTPDWEECFHTWPNTQPVTMLAPPNPDGTLTGVLILPQQSEITFDKI-KTENDINALFSAKFPDIFMGKPIPQDWVEDLLAQKVSLGGITTICNHFHAGNSVVLVGDAAHSVWASLGQGCNVALESCRILAEILEAHNN--------NLPTALPAYTLARKPDTDAIGRLSEQGFGGNKRAGNIVFFAKVITLSLFHK----LLPKIFPKPALLQLNQADVG 419          
BLAST of mRNA_S-firma_F_contig11000.1342.1 vs. uniprot
Match: B0C034_ACAM1 (FAD_binding_3 domain-containing protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) TaxID=329726 RepID=B0C034_ACAM1)

HSP 1 Score: 141 bits (355), Expect = 6.210e-35
Identity = 104/294 (35.37%), Postives = 151/294 (51.36%), Query Frame = 1
Query:   19 RTATFERASGDTVEREYDMLVGADGVNSRVRKCLEENLPDFTVRQREDHMQFKTISIPIMG-MEGADESWKTLFHT-SNSKTGCLIGAATKRGTITAVIILPGEGKTSFGALMKTPQDVRDFFGKYYPRAFGD---EGPSEEIAKDFLERRPQRLR-STYCSSLTHGN-VVLIGDAGHSMWASLGQGVNAAMEDCKVFAQVLESAAEGKASDQAVSVPTLLAAYNERRFEDALAAVTLSEGGMGG-ARTVRFRFAATMLVTMVLHKTLGLLAPKVFAPPALMEIGTK--PYGDI 870
            +TA F+ ASG   E+ +D+L+GADG++S VR  +   L  FTVRQ  D M +K  ++ +   + GA   W   FH    ++   +    +  G I AV+ILP EG+ +F  + +T  DV   F    P  F +    G      +D L ++      +T C+    G+ VVL+GDA HS+W SLGQG N A+E C++FA+VL  A      D ++++P    AY   R  D  A   LSE G GG  R     F A +   +++HK    L PK F   AL++IG    PY +I
Sbjct:  147 KTALFQEASGQH-EQTFDLLIGADGISSTVRYSMSSQLEGFTVRQHADDMMYKICNLGLAEHLPGATAEWADAFHVWPGAEPVTMAAPPSADGVIRAVLILPQEGEITFDTI-RTEADVSALFKAKLPVVFPNLDQTGFPSHFVQDLLSQKAAHGGFTTMCNRFEDGDCVVLLGDAAHSIWPSLGQGCNVALESCRIFAEVLAHAQ----GDLSLALP----AYTAARKPDTDAVARLSEIGFGGNKRASNPLFKAKVSTLILMHK----LLPKWFKGYALLQIGNADVPYANI 426          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11000.1342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRA5_ECTSI1.250e-14572.00Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus sili... [more]
D8LSX9_ECTSI1.910e-6972.37Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus sili... [more]
D8LSY0_ECTSI3.100e-5662.03FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A7S3BYE2_9VIRI2.220e-3736.62Hypothetical protein n=2 Tax=Prasinoderma singular... [more]
A0A0V7ZJA7_9CYAN3.310e-3633.78Uncharacterized protein n=1 Tax=Mastigocoleus test... [more]
B0C0P2_ACAM16.590e-3633.55Kynurenine 3-monooxygenase, putative n=3 Tax=Acary... [more]
UPI001F2C4A8C2.180e-3533.33FAD-dependent monooxygenase n=2 Tax=Acaryochloris ... [more]
UPI001BAE82642.320e-3535.47FAD-dependent monooxygenase n=2 Tax=Acaryochloris ... [more]
A0A3C1RTQ1_9CYAN2.810e-3533.10FAD-dependent monooxygenase n=3 Tax=unclassified P... [more]
B0C034_ACAM16.210e-3535.37FAD_binding_3 domain-containing protein n=1 Tax=Ac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11000contigS-firma_F_contig11000:970..3342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FRA5
PFAMsFAD_binding_3,NAD_binding_8
Max annot lvl2759|Eukaryota
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Evalue2.05e-146
EggNOG OGsCOG0654@1|root,KOG2614@2759|Eukaryota
EC1.14.13.9
DescriptionFAD binding
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size915
Cds size915
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11000.1342.1prot_S-firma_F_contig11000.1342.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11000 970..3342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.8873754-CDS-S-firma_F_contig11000:969..11281622815647.8873754-CDS-S-firma_F_contig11000:969..1128Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 970..1128 +
1696949477.3927097-CDS-S-firma_F_contig11000:969..11281696949477.3927097-CDS-S-firma_F_contig11000:969..1128Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 970..1128 +
1622815647.8980882-CDS-S-firma_F_contig11000:1419..15461622815647.8980882-CDS-S-firma_F_contig11000:1419..1546Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 1420..1546 +
1696949477.4060478-CDS-S-firma_F_contig11000:1419..15461696949477.4060478-CDS-S-firma_F_contig11000:1419..1546Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 1420..1546 +
1622815647.9085164-CDS-S-firma_F_contig11000:1774..19431622815647.9085164-CDS-S-firma_F_contig11000:1774..1943Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 1775..1943 +
1696949477.415119-CDS-S-firma_F_contig11000:1774..19431696949477.415119-CDS-S-firma_F_contig11000:1774..1943Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 1775..1943 +
1622815647.9254675-CDS-S-firma_F_contig11000:2156..22751622815647.9254675-CDS-S-firma_F_contig11000:2156..2275Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 2157..2275 +
1696949477.425657-CDS-S-firma_F_contig11000:2156..22751696949477.425657-CDS-S-firma_F_contig11000:2156..2275Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 2157..2275 +
1622815647.9390702-CDS-S-firma_F_contig11000:2698..29401622815647.9390702-CDS-S-firma_F_contig11000:2698..2940Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 2699..2940 +
1696949477.4410813-CDS-S-firma_F_contig11000:2698..29401696949477.4410813-CDS-S-firma_F_contig11000:2698..2940Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 2699..2940 +
1622815647.949382-CDS-S-firma_F_contig11000:3243..33421622815647.949382-CDS-S-firma_F_contig11000:3243..3342Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 3244..3342 +
1696949477.4495394-CDS-S-firma_F_contig11000:3243..33421696949477.4495394-CDS-S-firma_F_contig11000:3243..3342Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11000 3244..3342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11000.1342.1

>prot_S-firma_F_contig11000.1342.1 ID=prot_S-firma_F_contig11000.1342.1|Name=mRNA_S-firma_F_contig11000.1342.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=305bp
SPSSWSRTATFERASGDTVEREYDMLVGADGVNSRVRKCLEENLPDFTVR
QREDHMQFKTISIPIMGMEGADESWKTLFHTSNSKTGCLIGAATKRGTIT
AVIILPGEGKTSFGALMKTPQDVRDFFGKYYPRAFGDEGPSEEIAKDFLE
RRPQRLRSTYCSSLTHGNVVLIGDAGHSMWASLGQGVNAAMEDCKVFAQV
LESAAEGKASDQAVSVPTLLAAYNERRFEDALAAVTLSEGGMGGARTVRF
RFAATMLVTMVLHKTLGLLAPKVFAPPALMEIGTKPYGDISRGMKREAAV
TRALV
back to top

mRNA from alignment at S-firma_F_contig11000:970..3342+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11000.1342.1 ID=mRNA_S-firma_F_contig11000.1342.1|Name=mRNA_S-firma_F_contig11000.1342.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2373bp|location=Sequence derived from alignment at S-firma_F_contig11000:970..3342+ (Sphaerotrichia firma ET2_F female)
TCACCATCATCGTGGAGCAGGACCGCGACCTTCGAACGTGCCAGTGGCGA CACGGTGGAACGCGAGTATGACATGCTTGTGGGCGCGGACGGCGTGAACA GCCGTGTGCGCAAGTGTCTCGAGGAGAACTTGCCCGACTTTACCGTTCGA CAACGAGAGGTGACGCGTTTTCGTGCTCCCAAGTGATTCTTTGTGTCCCG GTTGGGATTGTTTTACTGTATTCAGTGTCGGCGCGCCGTATGAAGAGGTT CTGTAACGTCGCAGCCGCGTTGACGAGGATATTCGTTGGTAAAGCGAAGC TGGACGTTAGACGAGCGGTGGTCCGCCGTGAGGGCTTTAGTTTGGACTAG CAATCCTAGGCGGGGTTTGACGGAATGTCGTTGAGCTAACGTAACGATGT GCATGCAGGTTTGAGAACCTTTGTGGTTTCGTTTTGTTGTCTGTCCGCAG GATCACATGCAGTTCAAGACGATCTCGATCCCGATCATGGGTATGGAGGG GGCAGACGAGAGCTGGAAGACTCTCTTCCACACGTCCAACTCGAAGACCG GCTGCCTCATCGGCGCCGCAACAAAACGTGCGTGCATCGCGACCGCACGA GCGAAGAAGTTTGAACGAGTTCCCCTTCAAGTCGCATTGTTGAACCCCCT TCAAGACGCATGCATAGCCAACCTTCGGCGTGCGATCAAAACGTAGTCCT ATCCACGTACACCCGCTGAGCTGACCTCCACGGTTGGTCGTCCATGCCGA TCCACATGTTGCTCGCGCTTTCTTTCTCTCTTTCTTCGCCCGTGGATTTT TGCAGGTGGCACCATCACGGCCGTGATCATTCTGCCTGGGGAGGGCAAGA CATCGTTCGGTGCCCTCATGAAGACTCCGCAGGACGTGCGCGACTTCTTC GGAAAGTACTACCCCCGCGCCTTCGGCGATGAAGGACCCAGCGAGGAGAT CGCCAAAGATTTCCTTGAAAGAAGGTGAGGATACTTGAGCCGACATTCGA CTCAACGGACCTCCCCCCCCACCATCGAGCGCCCCCCTGGAGCGTACAAT CCCCGTTGCGATTTGACACATATGCGCCCAGCTGTTATTGTCAACAACGA CGTGGCTGTCGCGAAAGGTTGTGGTGGGAACCGTTCTCTGTGCTCACGCG CGCCTATCGACCAACCCCCCCCCCTCCCATCGCGTAGGCCTCAGCGCCTT CGGTCCACCTACTGCTCGAGCTTGACTCATGGAAACGTCGTCCTGATTGG TGACGCGGGTCATTCCATGTGGGCGTCCCTAGGTCAAGGGGTCAACGCAG CCATGGGTAAGCAGCCAATTAGGAAATGCGCGTTCTGTCTGTGTGCCATC TACAACCACCAAGTCTTCATGTACGTCAGTTCATCATCTCTACGCAGCCT CCGACGTACCAAAAGCTTGAAGCTCTGCTGCCAATAACGAGGAACAGCAG CCGTTTGAGCTTGCGTAGCTGCTGGCTGTTGGTTCGTTTTTCTTTGCAAG GCTCATCCCCATCGTCAGGCCAATGCGAGAATACGTGCACCCCATGTACT TCTCTGAGTTAACACGAGGTGGTAACGCAAACTTTATCTGCGTTTCTCGA TGCACAGCTTTGCGGTATTGTTTCATGTGTGTCAACCCCGCACGTTACGT GTCCCGTGTTCCCAAGATCGACGGGACCCCGTTGCCCGCGGTATCCTATT CTGTTTCGTTCTGCTCTTGATCGTACCAGAGGACTGCAAGGTGTTCGCCC AAGTCTTGGAATCCGCAGCAGAGGGTAAGGCGTCGGATCAAGCTGTCAGC GTACCGACACTGCTTGCTGCTTACAACGAGCGGAGGTTCGAGGATGCTCT CGCCGCGGTAACGCTGAGCGAGGGAGGGATGGGAGGAGCCAGGACCGTGA GATTTCGTTTCGCAGCCACGATGCTCGTTACGATGGTCCTCCACAAGACC CTTGGCCTTCTAGCTCCGAAGGTGAGGGAGATGGGTTTAGCGACGGCCGG GCCACGATGTGGTTGCGAGGAGGGAATAGAAACGGCGGTGAACCATATGC AACGGTATGCGGAAAGTCTGTTTCCGTTCGTTACGTACCACAGGATCGAC ATGCCGTTTAAGTGCAACAACTTTTGAAAATCGACATCAATCTACGATGG GTATCTGCGTAGGTATGCGTACTTATTGCTTCTCCGTCGCTGGCTGCTTT TTTTTGTTCAAGGCCTCGCTTGGCGCTCGCTCACTCTCTGCGCCTTTTTC TGTGCCCGGCTCCGTGGATGACAGGTCTTCGCGCCGCCCGCGCTGATGGA GATCGGGACCAAACCGTACGGAGATATTTCGCGCGGAATGAAGAGGGAGG CTGCTGTGACCCGAGCACTCGTA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig11000:970..3342+

>mRNA_S-firma_F_contig11000.1342.1 ID=mRNA_S-firma_F_contig11000.1342.1|Name=mRNA_S-firma_F_contig11000.1342.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1830bp|location=Sequence derived from alignment at S-firma_F_contig11000:970..3342+ (Sphaerotrichia firma ET2_F female)
TCACCATCATCGTGGAGCAGGACCGCGACCTTCGAACGTGCCAGTGGCGA
CACGGTGGAACGCGAGTATGACATGCTTGTGGGCGCGGACGGCGTGAACA
GCCGTGTGCGCAAGTGTCTCGAGGAGAACTTGCCCGACTTTACCGTTCGA
CAACGAGAGTCACCATCATCGTGGAGCAGGACCGCGACCTTCGAACGTGC
CAGTGGCGACACGGTGGAACGCGAGTATGACATGCTTGTGGGCGCGGACG
GCGTGAACAGCCGTGTGCGCAAGTGTCTCGAGGAGAACTTGCCCGACTTT
ACCGTTCGACAACGAGAGGATCACATGCAGTTCAAGACGATCTCGATCCC
GATCATGGGTATGGAGGGGGCAGACGAGAGCTGGAAGACTCTCTTCCACA
CGTCCAACTCGAAGACCGGCTGCCTCATCGGCGCCGCAACAAAACGATCA
CATGCAGTTCAAGACGATCTCGATCCCGATCATGGGTATGGAGGGGGCAG
ACGAGAGCTGGAAGACTCTCTTCCACACGTCCAACTCGAAGACCGGCTGC
CTCATCGGCGCCGCAACAAAACGTGGCACCATCACGGCCGTGATCATTCT
GCCTGGGGAGGGCAAGACATCGTTCGGTGCCCTCATGAAGACTCCGCAGG
ACGTGCGCGACTTCTTCGGAAAGTACTACCCCCGCGCCTTCGGCGATGAA
GGACCCAGCGAGGAGATCGCCAAAGATTTCCTTGAAAGAAGGTGGCACCA
TCACGGCCGTGATCATTCTGCCTGGGGAGGGCAAGACATCGTTCGGTGCC
CTCATGAAGACTCCGCAGGACGTGCGCGACTTCTTCGGAAAGTACTACCC
CCGCGCCTTCGGCGATGAAGGACCCAGCGAGGAGATCGCCAAAGATTTCC
TTGAAAGAAGGCCTCAGCGCCTTCGGTCCACCTACTGCTCGAGCTTGACT
CATGGAAACGTCGTCCTGATTGGTGACGCGGGTCATTCCATGTGGGCGTC
CCTAGGTCAAGGGGTCAACGCAGCCATGGGCCTCAGCGCCTTCGGTCCAC
CTACTGCTCGAGCTTGACTCATGGAAACGTCGTCCTGATTGGTGACGCGG
GTCATTCCATGTGGGCGTCCCTAGGTCAAGGGGTCAACGCAGCCATGGAG
GACTGCAAGGTGTTCGCCCAAGTCTTGGAATCCGCAGCAGAGGGTAAGGC
GTCGGATCAAGCTGTCAGCGTACCGACACTGCTTGCTGCTTACAACGAGC
GGAGGTTCGAGGATGCTCTCGCCGCGGTAACGCTGAGCGAGGGAGGGATG
GGAGGAGCCAGGACCGTGAGATTTCGTTTCGCAGCCACGATGCTCGTTAC
GATGGTCCTCCACAAGACCCTTGGCCTTCTAGCTCCGAAGAGGACTGCAA
GGTGTTCGCCCAAGTCTTGGAATCCGCAGCAGAGGGTAAGGCGTCGGATC
AAGCTGTCAGCGTACCGACACTGCTTGCTGCTTACAACGAGCGGAGGTTC
GAGGATGCTCTCGCCGCGGTAACGCTGAGCGAGGGAGGGATGGGAGGAGC
CAGGACCGTGAGATTTCGTTTCGCAGCCACGATGCTCGTTACGATGGTCC
TCCACAAGACCCTTGGCCTTCTAGCTCCGAAGGTCTTCGCGCCGCCCGCG
CTGATGGAGATCGGGACCAAACCGTACGGAGATATTTCGCGCGGAATGAA
GAGGGAGGCTGCTGTGACCCGAGCACTCGTAGTCTTCGCGCCGCCCGCGC
TGATGGAGATCGGGACCAAACCGTACGGAGATATTTCGCGCGGAATGAAG
AGGGAGGCTGCTGTGACCCGAGCACTCGTA
back to top