mRNA_S-firma_F_contig1100.1338.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1100.1338.1
Unique NamemRNA_S-firma_F_contig1100.1338.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A2H0PEG1_9DELT (Biphenyl 2,3-dioxygenase n=1 Tax=Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 TaxID=1973975 RepID=A0A2H0PEG1_9DELT)

HSP 1 Score: 58.9 bits (141), Expect = 2.360e-9
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 1
Query:    1 LNSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGA 255
            ++ W+ + RVTD+P  +M      +E + V  +       +F  F D C H+   L GG L        + CP+HG KFDVETGA
Sbjct:    1 MSKWMQVARVTDIPAGQMRPFTVDEEPIVVCNVDG-----AFYAFQDMCSHQELPLDGGELC----GKVITCPWHGAKFDVETGA 76          
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: UPI001F351A85 (aromatic ring-hydroxylating dioxygenase subunit alpha n=2 Tax=Burkholderiaceae TaxID=119060 RepID=UPI001F351A85)

HSP 1 Score: 60.8 bits (146), Expect = 7.210e-9
Identity = 34/94 (36.17%), Postives = 48/94 (51.06%), Query Frame = 1
Query:    1 LNSWLPLCRVTDVPQKEMYN--------VKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGAC 258
            L  WLP+C   DVP  E+          V + + S N     Q +      ++ DRCPHRGA+LS GS++       + CPYHG ++DV+ G C
Sbjct:   28 LGEWLPVCNSADVPAGELRGFVVAGERLVVWRNASENEDSAAQPDISTDVHVWRDRCPHRGAQLSLGSVT----GGLITCPYHGWRYDVD-GQC 116          
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A7V9NUR2_9ACTN (Rieske 2Fe-2S domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9NUR2_9ACTN)

HSP 1 Score: 60.1 bits (144), Expect = 1.370e-8
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   10 WLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGACEA 264
            W P+CR  D+ +K +  +  +DE + V      + R    +  DRCPHR A LS G ++ D    C+ECPYHG +FD + G+C A
Sbjct:   23 WYPVCRSKDLRRKPVA-ITMMDEPLAVFRDAGGSPR----VVLDRCPHRNAALSDGRVADDG---CIECPYHGWRFDGD-GSCRA 98          
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A6P4IYH4_DROKI (apoptosis-inducing factor 3 n=2 Tax=Drosophila kikkawai TaxID=30033 RepID=A0A6P4IYH4_DROKI)

HSP 1 Score: 60.1 bits (144), Expect = 1.450e-8
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   19 LCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGACEAF 267
            +C ++++P+ EM  V F DE  +++ + Q NGR        RCPHRGA L  G LS       V CP+HG  FD+ETG  E F
Sbjct:   17 VCHISELPENEMREVDF-DEHTHMLLVNQ-NGR--LRALGGRCPHRGAPLHKGVLSNGR----VRCPWHGACFDLETGDIENF 91          
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: UPI001D05D2FF (cholesterol 7-desaturase nvd n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D05D2FF)

HSP 1 Score: 58.5 bits (140), Expect = 4.980e-8
Identity = 28/87 (32.18%), Postives = 45/87 (51.72%), Query Frame = 1
Query:    4 NSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKST--CVECPYHGMKFDVETGAC 258
            N W  L   TD+ + ++  V  LDE+  V+     +      I +  CPH GA ++ G + ++  +   C+ECP+HG +FD  TG C
Sbjct:   88 NGWYALLESTDLSKGQVQYVAALDENFAVI----RDHNNKVTILNAYCPHLGANIAIGGVIRNTSTNNNCIECPFHGWRFDTTTGQC 170          
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A8J6SDW9_9CYAN (Aromatic ring-hydroxylating dioxygenase subunit alpha n=9 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6SDW9_9CYAN)

HSP 1 Score: 58.2 bits (139), Expect = 6.140e-8
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 1
Query:    4 NSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGAC 258
            N W P+  V ++    +  V+   ES+    +   N    F  F DRCPHRGA LS G +++D    CVECPYHG  F ++ GAC
Sbjct:    7 NFWTPVLPVAEIGLAPLA-VELAGESL----VLFRNWADQFAAFLDRCPHRGAPLSRGQVTEDG---CVECPYHGWHFALD-GAC 82          
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A535Y5I2_9CHLR (Non-heme iron oxygenase ferredoxin subunit n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535Y5I2_9CHLR)

HSP 1 Score: 55.1 bits (131), Expect = 7.890e-8
Identity = 29/85 (34.12%), Postives = 41/85 (48.24%), Query Frame = 1
Query:    1 LNSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGA 255
            + +W  + + +D+P + +   +  D  V V  +  E     F   DD C H G  L  G L  DE    +ECP HG +FDV TGA
Sbjct:    1 MTTWQLVAKASDIPPERVAVFQVGDHEVAVCNVGGE-----FYAIDDLCTHDGGSLDQGELEGDE----IECPRHGARFDVRTGA 76          
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A0Q8NY04_9BURK (Rieske domain-containing protein n=1 Tax=Noviherbaspirillum sp. Root189 TaxID=1736487 RepID=A0A0Q8NY04_9BURK)

HSP 1 Score: 57.4 bits (137), Expect = 1.180e-7
Identity = 32/86 (37.21%), Postives = 43/86 (50.00%), Query Frame = 1
Query:    1 LNSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGAC 258
            LN W P+     +    M  V+ L++ +    I   +       +DDRCPHRGA+LS G + QD     V C YHG +FD  TG C
Sbjct:    6 LNDWHPVASAASLEAGSMQPVRLLEQDL----IVWRSNDGEVHAWDDRCPHRGARLSLGRVHQDR----VVCAYHGWQFDA-TGQC 82          
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: UPI00034AE5A5 (Rieske 2Fe-2S domain-containing protein n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI00034AE5A5)

HSP 1 Score: 57.0 bits (136), Expect = 1.480e-7
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query:  127 DIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGACEA 264
            D+ +DRC HRGA LS G ++ D    C+ECP+HG +FD  TG  EA
Sbjct:  215 DVLEDRCTHRGAPLSDGVVTGD----CIECPWHGSRFDTATGMVEA 256          
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A0Q6WK97_9BURK (Rieske domain-containing protein n=1 Tax=Rhizobacter sp. Root1221 TaxID=1736433 RepID=A0A0Q6WK97_9BURK)

HSP 1 Score: 57.0 bits (136), Expect = 1.610e-7
Identity = 29/79 (36.71%), Postives = 41/79 (51.90%), Query Frame = 1
Query:    4 NSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFD 240
            N W P+     VP   +  V+ LDE +    +       +   +DDRCPHRGA+LS G ++ D     + CPYHG +FD
Sbjct:    9 NDWHPVAWSHQVPPGALVPVQLLDEEL----VVWRRADGALQAWDDRCPHRGARLSLGRVAGDT----LTCPYHGWRFD 79          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H0PEG1_9DELT2.360e-935.29Biphenyl 2,3-dioxygenase n=1 Tax=Deltaproteobacter... [more]
UPI001F351A857.210e-936.17aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A7V9NUR2_9ACTN1.370e-838.82Rieske 2Fe-2S domain-containing protein n=1 Tax=Ac... [more]
A0A6P4IYH4_DROKI1.450e-842.17apoptosis-inducing factor 3 n=2 Tax=Drosophila kik... [more]
UPI001D05D2FF4.980e-832.18cholesterol 7-desaturase nvd n=1 Tax=Chrysoperla c... [more]
A0A8J6SDW9_9CYAN6.140e-840.00Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A535Y5I2_9CHLR7.890e-834.12Non-heme iron oxygenase ferredoxin subunit n=2 Tax... [more]
A0A0Q8NY04_9BURK1.180e-737.21Rieske domain-containing protein n=1 Tax=Noviherba... [more]
UPI00034AE5A51.480e-752.17Rieske 2Fe-2S domain-containing protein n=1 Tax=Il... [more]
A0A0Q6WK97_9BURK1.610e-736.71Rieske domain-containing protein n=1 Tax=Rhizobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1100contigS-firma_F_contig1100:11016..11282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1458357.BG58_29945
PFAMsRieske
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC01333
KEGG koko:K19982
KEGG ReactionR11107
KEGG Pathwayko00404,ko01130,map00404,map01130
KEGG ModuleM00790
Evalue1.13e-09
EggNOG OGsCOG4638@1|root,COG4638@2|Bacteria,1MXXI@1224|Proteobacteria,2VKJ1@28216|Betaproteobacteria,1K306@119060|Burkholderiaceae
DescriptionRieske [2Fe-2S] domain
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.7421217-CDS-S-firma_F_contig1100:11015..112821622815647.7421217-CDS-S-firma_F_contig1100:11015..11282Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1100 11016..11282 +
1696949477.3402288-CDS-S-firma_F_contig1100:11015..112821696949477.3402288-CDS-S-firma_F_contig1100:11015..11282Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1100 11016..11282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1100.1338.1prot_S-firma_F_contig1100.1338.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1100 11016..11282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1100.1338.1

>prot_S-firma_F_contig1100.1338.1 ID=prot_S-firma_F_contig1100.1338.1|Name=mRNA_S-firma_F_contig1100.1338.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=89bp
LNSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCP
HRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGACEAF
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mRNA from alignment at S-firma_F_contig1100:11016..11282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1100.1338.1 ID=mRNA_S-firma_F_contig1100.1338.1|Name=mRNA_S-firma_F_contig1100.1338.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=267bp|location=Sequence derived from alignment at S-firma_F_contig1100:11016..11282+ (Sphaerotrichia firma ET2_F female)
CTGAATTCTTGGCTTCCCCTGTGCCGAGTCACAGATGTCCCGCAGAAAGA GATGTACAACGTGAAGTTTTTGGACGAGTCCGTCAACGTCGTGGGAATAC CCCAAGAAAATGGCAGAAAGAGTTTCGACATTTTCGACGACAGGTGCCCG CATCGGGGAGCGAAACTTTCAGGGGGATCCCTGAGTCAAGATGAAAAATC TACCTGTGTCGAGTGCCCCTACCACGGCATGAAATTTGACGTCGAAACCG GTGCCTGTGAAGCATTC
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Coding sequence (CDS) from alignment at S-firma_F_contig1100:11016..11282+

>mRNA_S-firma_F_contig1100.1338.1 ID=mRNA_S-firma_F_contig1100.1338.1|Name=mRNA_S-firma_F_contig1100.1338.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=534bp|location=Sequence derived from alignment at S-firma_F_contig1100:11016..11282+ (Sphaerotrichia firma ET2_F female)
CTGAATTCTTGGCTTCCCCTGTGCCGAGTCACAGATGTCCCGCAGAAAGA
GATGTACAACGTGAAGTTTTTGGACGAGTCCGTCAACGTCGTGGGAATAC
CCCAAGAAAATGGCAGAAAGAGTTTCGACATTTTCGACGACAGGTGCCCG
CATCGGGGAGCGAAACTTTCAGGGGGATCCCTGAGTCAAGATGAAAAATC
TACCTGTGTCGAGTGCCCCTACCACGGCATGAAATTTGACGTCGAAACCG
GTGCCTGTGAAGCATTCCTGAATTCTTGGCTTCCCCTGTGCCGAGTCACA
GATGTCCCGCAGAAAGAGATGTACAACGTGAAGTTTTTGGACGAGTCCGT
CAACGTCGTGGGAATACCCCAAGAAAATGGCAGAAAGAGTTTCGACATTT
TCGACGACAGGTGCCCGCATCGGGGAGCGAAACTTTCAGGGGGATCCCTG
AGTCAAGATGAAAAATCTACCTGTGTCGAGTGCCCCTACCACGGCATGAA
ATTTGACGTCGAAACCGGTGCCTGTGAAGCATTC
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