mRNA_S-firma_F_contig1100.1338.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A2H0PEG1_9DELT (Biphenyl 2,3-dioxygenase n=1 Tax=Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 TaxID=1973975 RepID=A0A2H0PEG1_9DELT) HSP 1 Score: 58.9 bits (141), Expect = 2.360e-9 Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 1
Query: 1 LNSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGA 255
++ W+ + RVTD+P +M +E + V + +F F D C H+ L GG L + CP+HG KFDVETGA
Sbjct: 1 MSKWMQVARVTDIPAGQMRPFTVDEEPIVVCNVDG-----AFYAFQDMCSHQELPLDGGELC----GKVITCPWHGAKFDVETGA 76
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: UPI001F351A85 (aromatic ring-hydroxylating dioxygenase subunit alpha n=2 Tax=Burkholderiaceae TaxID=119060 RepID=UPI001F351A85) HSP 1 Score: 60.8 bits (146), Expect = 7.210e-9 Identity = 34/94 (36.17%), Postives = 48/94 (51.06%), Query Frame = 1
Query: 1 LNSWLPLCRVTDVPQKEMYN--------VKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGAC 258
L WLP+C DVP E+ V + + S N Q + ++ DRCPHRGA+LS GS++ + CPYHG ++DV+ G C
Sbjct: 28 LGEWLPVCNSADVPAGELRGFVVAGERLVVWRNASENEDSAAQPDISTDVHVWRDRCPHRGAQLSLGSVT----GGLITCPYHGWRYDVD-GQC 116
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A7V9NUR2_9ACTN (Rieske 2Fe-2S domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9NUR2_9ACTN) HSP 1 Score: 60.1 bits (144), Expect = 1.370e-8 Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 1
Query: 10 WLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGACEA 264
W P+CR D+ +K + + +DE + V + R + DRCPHR A LS G ++ D C+ECPYHG +FD + G+C A
Sbjct: 23 WYPVCRSKDLRRKPVA-ITMMDEPLAVFRDAGGSPR----VVLDRCPHRNAALSDGRVADDG---CIECPYHGWRFDGD-GSCRA 98
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A6P4IYH4_DROKI (apoptosis-inducing factor 3 n=2 Tax=Drosophila kikkawai TaxID=30033 RepID=A0A6P4IYH4_DROKI) HSP 1 Score: 60.1 bits (144), Expect = 1.450e-8 Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 19 LCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGACEAF 267
+C ++++P+ EM V F DE +++ + Q NGR RCPHRGA L G LS V CP+HG FD+ETG E F
Sbjct: 17 VCHISELPENEMREVDF-DEHTHMLLVNQ-NGR--LRALGGRCPHRGAPLHKGVLSNGR----VRCPWHGACFDLETGDIENF 91
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: UPI001D05D2FF (cholesterol 7-desaturase nvd n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D05D2FF) HSP 1 Score: 58.5 bits (140), Expect = 4.980e-8 Identity = 28/87 (32.18%), Postives = 45/87 (51.72%), Query Frame = 1
Query: 4 NSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKST--CVECPYHGMKFDVETGAC 258
N W L TD+ + ++ V LDE+ V+ + I + CPH GA ++ G + ++ + C+ECP+HG +FD TG C
Sbjct: 88 NGWYALLESTDLSKGQVQYVAALDENFAVI----RDHNNKVTILNAYCPHLGANIAIGGVIRNTSTNNNCIECPFHGWRFDTTTGQC 170
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A8J6SDW9_9CYAN (Aromatic ring-hydroxylating dioxygenase subunit alpha n=9 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6SDW9_9CYAN) HSP 1 Score: 58.2 bits (139), Expect = 6.140e-8 Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 1
Query: 4 NSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGAC 258
N W P+ V ++ + V+ ES+ + N F F DRCPHRGA LS G +++D CVECPYHG F ++ GAC
Sbjct: 7 NFWTPVLPVAEIGLAPLA-VELAGESL----VLFRNWADQFAAFLDRCPHRGAPLSRGQVTEDG---CVECPYHGWHFALD-GAC 82
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A535Y5I2_9CHLR (Non-heme iron oxygenase ferredoxin subunit n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535Y5I2_9CHLR) HSP 1 Score: 55.1 bits (131), Expect = 7.890e-8 Identity = 29/85 (34.12%), Postives = 41/85 (48.24%), Query Frame = 1
Query: 1 LNSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGA 255
+ +W + + +D+P + + + D V V + E F DD C H G L G L DE +ECP HG +FDV TGA
Sbjct: 1 MTTWQLVAKASDIPPERVAVFQVGDHEVAVCNVGGE-----FYAIDDLCTHDGGSLDQGELEGDE----IECPRHGARFDVRTGA 76
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A0Q8NY04_9BURK (Rieske domain-containing protein n=1 Tax=Noviherbaspirillum sp. Root189 TaxID=1736487 RepID=A0A0Q8NY04_9BURK) HSP 1 Score: 57.4 bits (137), Expect = 1.180e-7 Identity = 32/86 (37.21%), Postives = 43/86 (50.00%), Query Frame = 1
Query: 1 LNSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGAC 258
LN W P+ + M V+ L++ + I + +DDRCPHRGA+LS G + QD V C YHG +FD TG C
Sbjct: 6 LNDWHPVASAASLEAGSMQPVRLLEQDL----IVWRSNDGEVHAWDDRCPHRGARLSLGRVHQDR----VVCAYHGWQFDA-TGQC 82
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: UPI00034AE5A5 (Rieske 2Fe-2S domain-containing protein n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI00034AE5A5) HSP 1 Score: 57.0 bits (136), Expect = 1.480e-7 Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query: 127 DIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFDVETGACEA 264
D+ +DRC HRGA LS G ++ D C+ECP+HG +FD TG EA
Sbjct: 215 DVLEDRCTHRGAPLSDGVVTGD----CIECPWHGSRFDTATGMVEA 256
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Match: A0A0Q6WK97_9BURK (Rieske domain-containing protein n=1 Tax=Rhizobacter sp. Root1221 TaxID=1736433 RepID=A0A0Q6WK97_9BURK) HSP 1 Score: 57.0 bits (136), Expect = 1.610e-7 Identity = 29/79 (36.71%), Postives = 41/79 (51.90%), Query Frame = 1
Query: 4 NSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPHRGAKLSGGSLSQDEKSTCVECPYHGMKFD 240
N W P+ VP + V+ LDE + + + +DDRCPHRGA+LS G ++ D + CPYHG +FD
Sbjct: 9 NDWHPVAWSHQVPPGALVPVQLLDEEL----VVWRRADGALQAWDDRCPHRGARLSLGRVAGDT----LTCPYHGWRFD 79 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1100.1338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1100.1338.1 >prot_S-firma_F_contig1100.1338.1 ID=prot_S-firma_F_contig1100.1338.1|Name=mRNA_S-firma_F_contig1100.1338.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=89bp LNSWLPLCRVTDVPQKEMYNVKFLDESVNVVGIPQENGRKSFDIFDDRCPback to top mRNA from alignment at S-firma_F_contig1100:11016..11282+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1100.1338.1 ID=mRNA_S-firma_F_contig1100.1338.1|Name=mRNA_S-firma_F_contig1100.1338.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=267bp|location=Sequence derived from alignment at S-firma_F_contig1100:11016..11282+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1100:11016..11282+ >mRNA_S-firma_F_contig1100.1338.1 ID=mRNA_S-firma_F_contig1100.1338.1|Name=mRNA_S-firma_F_contig1100.1338.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=534bp|location=Sequence derived from alignment at S-firma_F_contig1100:11016..11282+ (Sphaerotrichia firma ET2_F female)back to top |