mRNA_S-firma_F_contig1100.1337.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: D7G683_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G683_ECTSI) HSP 1 Score: 234 bits (597), Expect = 3.270e-74 Identity = 120/138 (86.96%), Postives = 129/138 (93.48%), Query Frame = 1
Query: 1 DSDVVKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANPTDNDYVFVSAACFLNGSMLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGAKERSAVGDKIDSDFQEEMTPTQLIQK 414
DSDVVKFLVEQGL LERDSCND+TPLV AV G+ DAV+ALL+AGANPTD+DYVFV+AA FLNGSMLRLLIK+GANVNA SERDGTILHMIA+KAVAVGDL CLELLLEAGAKERSAVGDK+DSDFQ EMTPTQLIQK
Sbjct: 98 DSDVVKFLVEQGLELERDSCNDDTPLVWAVSHGRFDAVEALLKAGANPTDDDYVFVNAASFLNGSMLRLLIKYGANVNAGSERDGTILHMIANKAVAVGDLACLELLLEAGAKERSAVGDKMDSDFQAEMTPTQLIQK 235
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: UPI001EB04C0E (putative ankyrin repeat protein RF_0381 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB04C0E) HSP 1 Score: 55.5 bits (132), Expect = 3.000e-6 Identity = 40/115 (34.78%), Postives = 57/115 (49.57%), Query Frame = 1
Query: 1 DSDVVKFLVEQGLALERDSCNDE-TPLVMAVGRGKLDAVKALLEAGANPTDNDYVFVSAACFLNG--SMLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGA 336
+ D++ L+ G + + + T L AV +GKLD VK LLEAGANP + F + LL+K+G+N+N S T+LH A+ GDL +E L GA
Sbjct: 150 NEDMLDLLLRSGCDINLGTKDTNYTILHEAVAKGKLDIVKVLLEAGANPNSYEVNQRLTPSFFTTRQDIHELLVKYGSNMNHTSRSGDTVLH----HAITHGDLPLVEYFLNKGA 260
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: A0A8J5JIK8_HOMAM (Phosphatase 1 regulatory inhibitor subunit 16B-like n=4 Tax=Astacidea TaxID=6712 RepID=A0A8J5JIK8_HOMAM) HSP 1 Score: 53.9 bits (128), Expect = 1.030e-5 Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1
Query: 76 LVMAVGRGKLDAVKALLEAGANP--TDNDYVFVSAACFLNGS--MLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGA 336
L+ A R +D V+ALLEAG NP T+ D + C ++ S M+RLL+ HGA+VNA+ T LH A G L + L+ GA
Sbjct: 75 LLEAAARNDIDEVQALLEAGVNPDSTNEDGLTALHQCCIDDSEEMMRLLVHHGADVNAQDSEKWTPLHA----AATCGHLHLAKFLIAKGA 161
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: UPI001EE584DB (putative ankyrin repeat protein RF_0381 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE584DB) HSP 1 Score: 53.5 bits (127), Expect = 1.130e-5 Identity = 39/115 (33.91%), Postives = 57/115 (49.57%), Query Frame = 1
Query: 1 DSDVVKFLVEQGLALERDSCNDE-TPLVMAVGRGKLDAVKALLEAGANPTDNDYVFVSAACFLNG--SMLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGA 336
+ D++ L+ G + + + T L AV +GKLD VK LLEAGANP + F + LL+++G+N+N S T+LH A+ GDL +E L GA
Sbjct: 5 NDDMLHLLLRSGCDINLGTKDTNYTILHEAVAKGKLDIVKILLEAGANPNRYEVNQRLTPSFFTTRQDIHELLVQYGSNINHTSRSGDTVLH----HAITHGDLPLVEYFLNKGA 115
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 53.5 bits (127), Expect = 1.370e-5 Identity = 35/125 (28.00%), Postives = 63/125 (50.40%), Query Frame = 1
Query: 7 DVVKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANP---TDNDYVFVSAACFLN----GSMLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGAKERSAVGD 360
D ++ L+E G ++ + L A K++A+ LL AGAN +++ + + A + L +L+KHGA+VNA++ ++L +A +A G + ++LLL GA E G+
Sbjct: 174 DFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGN 298
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: A0A355KRT0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dependentiae bacterium TaxID=2030827 RepID=A0A355KRT0_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 1.840e-5 Identity = 23/43 (53.49%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 13 VKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGAN 141
VK+L+EQG+A+++ + N+ETPL++A RG LD V+ L+EAGA+
Sbjct: 223 VKYLIEQGVAIDKVNNNNETPLLLAAQRGHLDVVRCLVEAGAS 265
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: A0A5D6YIR2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIR2_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 3.910e-5 Identity = 42/123 (34.15%), Postives = 62/123 (50.41%), Query Frame = 1
Query: 10 VVKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANPTDNDYVFVSAACFL-----NGSMLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGAKERSAVGDK 363
VV+ L+ G L+ + +TPL+ A GKL+ V+ LL AGANP + SA +L + +L L++ GA+VNA+S + T LH A G+ +LL GA + DK
Sbjct: 388 VVEALLAAGSMLDMVDSDGQTPLLQACLGGKLELVRLLLHAGANPAHQNKQAHSALHYLAAFCRDRQLLVDLVERGADVNAKSLKLNTPLHFAAMN----GNDVAAHVLLAHGASASAINEDK 506
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: A0A892ZK55_9NEIS (Ankyrin repeat domain-containing protein n=2 Tax=Paralysiella testudinis TaxID=2809020 RepID=A0A892ZK55_9NEIS) HSP 1 Score: 50.8 bits (120), Expect = 4.700e-5 Identity = 28/81 (34.57%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 13 VKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANPTDNDY-----VFVSAACFLNGSMLRLLIKHGANVNAE 240
+ F +E+G+ + C TPL AV G +AVK LLEAGANP ++ + + +N +++ LL++HGA+++ E
Sbjct: 63 ILFYLEKGVPINAQDCYGMTPLHYAVRSGNYEAVKVLLEAGANPNISNQDGSNPLDLGFELPVNLNLIELLLQHGADIHHE 143
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: A0A225DSS3_9BACT (Ankyrin n=1 Tax=Fimbriiglobus ruber TaxID=1908690 RepID=A0A225DSS3_9BACT) HSP 1 Score: 51.2 bits (121), Expect = 9.250e-5 Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1
Query: 10 VVKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANPTDNDYVFVS-AACFLNGSMLRLLIKHGANVNA 237
+V+FL+EQG L S E+ L ++ G G+LD V+ LLEAGA+P ++ + F + +RL I+ G ++NA
Sbjct: 54 IVRFLIEQGADLNASSDYGESGLSVSSGAGRLDVVRVLLEAGADPAPLEWTLLHLVVAFGSLERIRLQIQAGDDLNA 130 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1100.1337.1 >prot_S-firma_F_contig1100.1337.1 ID=prot_S-firma_F_contig1100.1337.1|Name=mRNA_S-firma_F_contig1100.1337.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=139bp DSDVVKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANPTDback to top mRNA from alignment at S-firma_F_contig1100:6424..6840+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1100.1337.1 ID=mRNA_S-firma_F_contig1100.1337.1|Name=mRNA_S-firma_F_contig1100.1337.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=417bp|location=Sequence derived from alignment at S-firma_F_contig1100:6424..6840+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1100:6424..6840+ >mRNA_S-firma_F_contig1100.1337.1 ID=mRNA_S-firma_F_contig1100.1337.1|Name=mRNA_S-firma_F_contig1100.1337.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=834bp|location=Sequence derived from alignment at S-firma_F_contig1100:6424..6840+ (Sphaerotrichia firma ET2_F female)back to top |