mRNA_S-firma_F_contig1100.1337.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1100.1337.1
Unique NamemRNA_S-firma_F_contig1100.1337.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: D7G683_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G683_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 3.270e-74
Identity = 120/138 (86.96%), Postives = 129/138 (93.48%), Query Frame = 1
Query:    1 DSDVVKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANPTDNDYVFVSAACFLNGSMLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGAKERSAVGDKIDSDFQEEMTPTQLIQK 414
            DSDVVKFLVEQGL LERDSCND+TPLV AV  G+ DAV+ALL+AGANPTD+DYVFV+AA FLNGSMLRLLIK+GANVNA SERDGTILHMIA+KAVAVGDL CLELLLEAGAKERSAVGDK+DSDFQ EMTPTQLIQK
Sbjct:   98 DSDVVKFLVEQGLELERDSCNDDTPLVWAVSHGRFDAVEALLKAGANPTDDDYVFVNAASFLNGSMLRLLIKYGANVNAGSERDGTILHMIANKAVAVGDLACLELLLEAGAKERSAVGDKMDSDFQAEMTPTQLIQK 235          
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: UPI001EB04C0E (putative ankyrin repeat protein RF_0381 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB04C0E)

HSP 1 Score: 55.5 bits (132), Expect = 3.000e-6
Identity = 40/115 (34.78%), Postives = 57/115 (49.57%), Query Frame = 1
Query:    1 DSDVVKFLVEQGLALERDSCNDE-TPLVMAVGRGKLDAVKALLEAGANPTDNDYVFVSAACFLNG--SMLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGA 336
            + D++  L+  G  +   + +   T L  AV +GKLD VK LLEAGANP   +        F      +  LL+K+G+N+N  S    T+LH     A+  GDL  +E  L  GA
Sbjct:  150 NEDMLDLLLRSGCDINLGTKDTNYTILHEAVAKGKLDIVKVLLEAGANPNSYEVNQRLTPSFFTTRQDIHELLVKYGSNMNHTSRSGDTVLH----HAITHGDLPLVEYFLNKGA 260          
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: A0A8J5JIK8_HOMAM (Phosphatase 1 regulatory inhibitor subunit 16B-like n=4 Tax=Astacidea TaxID=6712 RepID=A0A8J5JIK8_HOMAM)

HSP 1 Score: 53.9 bits (128), Expect = 1.030e-5
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   76 LVMAVGRGKLDAVKALLEAGANP--TDNDYVFVSAACFLNGS--MLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGA 336
            L+ A  R  +D V+ALLEAG NP  T+ D +     C ++ S  M+RLL+ HGA+VNA+     T LH     A   G L   + L+  GA
Sbjct:   75 LLEAAARNDIDEVQALLEAGVNPDSTNEDGLTALHQCCIDDSEEMMRLLVHHGADVNAQDSEKWTPLHA----AATCGHLHLAKFLIAKGA 161          
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: UPI001EE584DB (putative ankyrin repeat protein RF_0381 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE584DB)

HSP 1 Score: 53.5 bits (127), Expect = 1.130e-5
Identity = 39/115 (33.91%), Postives = 57/115 (49.57%), Query Frame = 1
Query:    1 DSDVVKFLVEQGLALERDSCNDE-TPLVMAVGRGKLDAVKALLEAGANPTDNDYVFVSAACFLNG--SMLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGA 336
            + D++  L+  G  +   + +   T L  AV +GKLD VK LLEAGANP   +        F      +  LL+++G+N+N  S    T+LH     A+  GDL  +E  L  GA
Sbjct:    5 NDDMLHLLLRSGCDINLGTKDTNYTILHEAVAKGKLDIVKILLEAGANPNRYEVNQRLTPSFFTTRQDIHELLVQYGSNINHTSRSGDTVLH----HAITHGDLPLVEYFLNKGA 115          
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.370e-5
Identity = 35/125 (28.00%), Postives = 63/125 (50.40%), Query Frame = 1
Query:    7 DVVKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANP---TDNDYVFVSAACFLN----GSMLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGAKERSAVGD 360
            D ++ L+E G  ++  +      L  A    K++A+  LL AGAN    +++ +  +  A         + L +L+KHGA+VNA++    ++L  +A +A   G +  ++LLL  GA E    G+
Sbjct:  174 DFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGN 298          
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: A0A355KRT0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dependentiae bacterium TaxID=2030827 RepID=A0A355KRT0_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.840e-5
Identity = 23/43 (53.49%), Postives = 36/43 (83.72%), Query Frame = 1
Query:   13 VKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGAN 141
            VK+L+EQG+A+++ + N+ETPL++A  RG LD V+ L+EAGA+
Sbjct:  223 VKYLIEQGVAIDKVNNNNETPLLLAAQRGHLDVVRCLVEAGAS 265          
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: A0A5D6YIR2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIR2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.910e-5
Identity = 42/123 (34.15%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   10 VVKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANPTDNDYVFVSAACFL-----NGSMLRLLIKHGANVNAESERDGTILHMIADKAVAVGDLTCLELLLEAGAKERSAVGDK 363
            VV+ L+  G  L+    + +TPL+ A   GKL+ V+ LL AGANP   +    SA  +L     +  +L  L++ GA+VNA+S +  T LH  A      G+     +LL  GA   +   DK
Sbjct:  388 VVEALLAAGSMLDMVDSDGQTPLLQACLGGKLELVRLLLHAGANPAHQNKQAHSALHYLAAFCRDRQLLVDLVERGADVNAKSLKLNTPLHFAAMN----GNDVAAHVLLAHGASASAINEDK 506          
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: A0A892ZK55_9NEIS (Ankyrin repeat domain-containing protein n=2 Tax=Paralysiella testudinis TaxID=2809020 RepID=A0A892ZK55_9NEIS)

HSP 1 Score: 50.8 bits (120), Expect = 4.700e-5
Identity = 28/81 (34.57%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   13 VKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANPTDNDY-----VFVSAACFLNGSMLRLLIKHGANVNAE 240
            + F +E+G+ +    C   TPL  AV  G  +AVK LLEAGANP  ++      + +     +N +++ LL++HGA+++ E
Sbjct:   63 ILFYLEKGVPINAQDCYGMTPLHYAVRSGNYEAVKVLLEAGANPNISNQDGSNPLDLGFELPVNLNLIELLLQHGADIHHE 143          
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Match: A0A225DSS3_9BACT (Ankyrin n=1 Tax=Fimbriiglobus ruber TaxID=1908690 RepID=A0A225DSS3_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 9.250e-5
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   10 VVKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANPTDNDYVFVS-AACFLNGSMLRLLIKHGANVNA 237
            +V+FL+EQG  L   S   E+ L ++ G G+LD V+ LLEAGA+P   ++  +     F +   +RL I+ G ++NA
Sbjct:   54 IVRFLIEQGADLNASSDYGESGLSVSSGAGRLDVVRVLLEAGADPAPLEWTLLHLVVAFGSLERIRLQIQAGDDLNA 130          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1100.1337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G683_ECTSI3.270e-7486.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001EB04C0E3.000e-634.78putative ankyrin repeat protein RF_0381 n=1 Tax=Ha... [more]
A0A8J5JIK8_HOMAM1.030e-539.56Phosphatase 1 regulatory inhibitor subunit 16B-lik... [more]
UPI001EE584DB1.130e-533.91putative ankyrin repeat protein RF_0381 n=1 Tax=Ha... [more]
D7FKL4_ECTSI1.370e-528.00Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A355KRT0_9BACT1.840e-553.49Uncharacterized protein n=1 Tax=Candidatus Depende... [more]
A0A5D6YIR2_9STRA3.910e-534.15Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A892ZK55_9NEIS4.700e-534.57Ankyrin repeat domain-containing protein n=2 Tax=P... [more]
A0A225DSS3_9BACT9.250e-537.66Ankyrin n=1 Tax=Fimbriiglobus ruber TaxID=1908690 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1100contigS-firma_F_contig1100:6424..6840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog4787.PITG_10128T0
PFAMsAnk,Ank_2,Ank_4
Max annot lvl4776|Peronosporales
KEGG koko:K15503
Evalue7.09e-07
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,3QDX8@4776|Peronosporales
Descriptionspectrin binding
COG categoryS
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-21_002210.1
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.7103982-CDS-S-firma_F_contig1100:6423..68401622815647.7103982-CDS-S-firma_F_contig1100:6423..6840Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1100 6424..6840 +
1696949477.3169029-CDS-S-firma_F_contig1100:6423..68401696949477.3169029-CDS-S-firma_F_contig1100:6423..6840Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1100 6424..6840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1100.1337.1prot_S-firma_F_contig1100.1337.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1100 6424..6840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1100.1337.1

>prot_S-firma_F_contig1100.1337.1 ID=prot_S-firma_F_contig1100.1337.1|Name=mRNA_S-firma_F_contig1100.1337.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=139bp
DSDVVKFLVEQGLALERDSCNDETPLVMAVGRGKLDAVKALLEAGANPTD
NDYVFVSAACFLNGSMLRLLIKHGANVNAESERDGTILHMIADKAVAVGD
LTCLELLLEAGAKERSAVGDKIDSDFQEEMTPTQLIQKK
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mRNA from alignment at S-firma_F_contig1100:6424..6840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1100.1337.1 ID=mRNA_S-firma_F_contig1100.1337.1|Name=mRNA_S-firma_F_contig1100.1337.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=417bp|location=Sequence derived from alignment at S-firma_F_contig1100:6424..6840+ (Sphaerotrichia firma ET2_F female)
GATTCCGATGTTGTCAAATTTCTCGTCGAACAAGGTCTTGCGCTCGAAAG AGATTCGTGTAATGACGAAACTCCTCTGGTTATGGCAGTCGGCCGTGGGA AGTTGGATGCAGTTAAGGCACTCCTGGAGGCGGGGGCCAACCCCACTGAT AATGACTATGTTTTTGTCAGCGCAGCCTGTTTCTTGAACGGGAGTATGTT AAGGCTTTTGATCAAACATGGCGCAAACGTCAACGCTGAGTCAGAAAGGG ACGGGACCATTCTGCATATGATCGCGGACAAGGCGGTGGCGGTGGGTGAC TTGACATGCTTAGAACTACTATTGGAGGCGGGCGCGAAGGAACGTTCCGC AGTTGGGGACAAGATTGATTCTGATTTTCAAGAAGAGATGACTCCGACGC AATTGATCCAGAAAAAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1100:6424..6840+

>mRNA_S-firma_F_contig1100.1337.1 ID=mRNA_S-firma_F_contig1100.1337.1|Name=mRNA_S-firma_F_contig1100.1337.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=834bp|location=Sequence derived from alignment at S-firma_F_contig1100:6424..6840+ (Sphaerotrichia firma ET2_F female)
GATTCCGATGTTGTCAAATTTCTCGTCGAACAAGGTCTTGCGCTCGAAAG
AGATTCGTGTAATGACGAAACTCCTCTGGTTATGGCAGTCGGCCGTGGGA
AGTTGGATGCAGTTAAGGCACTCCTGGAGGCGGGGGCCAACCCCACTGAT
AATGACTATGTTTTTGTCAGCGCAGCCTGTTTCTTGAACGGGAGTATGTT
AAGGCTTTTGATCAAACATGGCGCAAACGTCAACGCTGAGTCAGAAAGGG
ACGGGACCATTCTGCATATGATCGCGGACAAGGCGGTGGCGGTGGGTGAC
TTGACATGCTTAGAACTACTATTGGAGGCGGGCGCGAAGGAACGTTCCGC
AGTTGGGGACAAGATTGATTCTGATTTTCAAGAAGAGATGACTCCGACGC
AATTGATCCAGAAAAAGGATTCCGATGTTGTCAAATTTCTCGTCGAACAA
GGTCTTGCGCTCGAAAGAGATTCGTGTAATGACGAAACTCCTCTGGTTAT
GGCAGTCGGCCGTGGGAAGTTGGATGCAGTTAAGGCACTCCTGGAGGCGG
GGGCCAACCCCACTGATAATGACTATGTTTTTGTCAGCGCAGCCTGTTTC
TTGAACGGGAGTATGTTAAGGCTTTTGATCAAACATGGCGCAAACGTCAA
CGCTGAGTCAGAAAGGGACGGGACCATTCTGCATATGATCGCGGACAAGG
CGGTGGCGGTGGGTGACTTGACATGCTTAGAACTACTATTGGAGGCGGGC
GCGAAGGAACGTTCCGCAGTTGGGGACAAGATTGATTCTGATTTTCAAGA
AGAGATGACTCCGACGCAATTGATCCAGAAAAAG
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