mRNA_S-firma_F_contig11.1319.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11.1319.1
Unique NamemRNA_S-firma_F_contig11.1319.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11.1319.1 vs. uniprot
Match: A0A6H5JX16_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JX16_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 2.940e-87
Identity = 157/233 (67.38%), Postives = 177/233 (75.97%), Query Frame = 3 
Query:   42 MALSRSAALLVSTLASCTV-KGVWSFV----PAGATLARRCPTNPAVRDTAATNPAAAGPSSYIVCLSSASPFEGIEHDNSDDEVDVVQREAEQLEDLIRGSRGIVVEAIEREWREEMLRVFGDEGERLCLEAYEGYLDRGRGAIFVNVDMGLSSSRKGHDTAPCHAVFRSLEEVVMERSSRVKPADQMEIIQRCQAYDPEAAFVVVFGHKGMLGVQVMRPSLAPGELHRSRR 725
            M L  +A LL STLASC    GV   V    PA     R   ++     + ++   A GP   +V  SS  PFE +EH +++DEVDV+QREAEQLE +IRGSRGIVVEAIEREWREEMLRV G+EGE LC  AYEGYLDRGRG IFVNVDMGLSSS KGHD APCHAVF SLEEVV ERSSRVKPADQM+IIQRCQ YDPEA FV+VFG+KGMLGVQV+RPS+APGE+ RSRR
Sbjct:    1 MQLCGTAVLLASTLASCRAFTGVRPLVVPLAPAAHVRLRHVSSSSDPLGSGSSRARATGPIPNVVRFSS--PFEDVEHGDNEDEVDVMQREAEQLEAMIRGSRGIVVEAIEREWREEMLRVLGEEGEMLCSLAYEGYLDRGRGVIFVNVDMGLSSSNKGHDGAPCHAVFCSLEEVVTERSSRVKPADQMQIIQRCQEYDPEAGFVLVFGYKGMLGVQVIRPSMAPGEVFRSRR 231
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11.1319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JX16_9PHAE2.940e-8767.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11contigS-firma_F_contig11:16625..18993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LKQ0
Max annot lvl2759|Eukaryota
Evalue7.81e-08
EggNOG OGs2F0BR@1|root,2T1HY@2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000920.1
Exons3
Model size1505
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11.1319.1prot_S-firma_F_contig11.1319.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11 16630..18219 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.943765-UTR-S-firma_F_contig11:16624..166291622815644.943765-UTR-S-firma_F_contig11:16624..16629Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11 16625..16629 +
1696949475.1783276-UTR-S-firma_F_contig11:16624..166291696949475.1783276-UTR-S-firma_F_contig11:16624..16629Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11 16625..16629 +
1622815644.9902117-UTR-S-firma_F_contig11:18219..189931622815644.9902117-UTR-S-firma_F_contig11:18219..18993Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11 18220..18993 +
1696949475.233637-UTR-S-firma_F_contig11:18219..189931696949475.233637-UTR-S-firma_F_contig11:18219..18993Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11 18220..18993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.9583688-CDS-S-firma_F_contig11:16629..170881622815644.9583688-CDS-S-firma_F_contig11:16629..17088Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11 16630..17088 +
1696949475.1893468-CDS-S-firma_F_contig11:16629..170881696949475.1893468-CDS-S-firma_F_contig11:16629..17088Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11 16630..17088 +
1622815644.969482-CDS-S-firma_F_contig11:17750..179151622815644.969482-CDS-S-firma_F_contig11:17750..17915Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11 17751..17915 +
1696949475.1981273-CDS-S-firma_F_contig11:17750..179151696949475.1981273-CDS-S-firma_F_contig11:17750..17915Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11 17751..17915 +
1622815644.9794354-CDS-S-firma_F_contig11:18117..182191622815644.9794354-CDS-S-firma_F_contig11:18117..18219Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11 18118..18219 +
1696949475.21358-CDS-S-firma_F_contig11:18117..182191696949475.21358-CDS-S-firma_F_contig11:18117..18219Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11 18118..18219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11.1319.1

>prot_S-firma_F_contig11.1319.1 ID=prot_S-firma_F_contig11.1319.1|Name=mRNA_S-firma_F_contig11.1319.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=242bp
MKARRHSNTLTTMALSRSAALLVSTLASCTVKGVWSFVPAGATLARRCPT
NPAVRDTAATNPAAAGPSSYIVCLSSASPFEGIEHDNSDDEVDVVQREAE
QLEDLIRGSRGIVVEAIEREWREEMLRVFGDEGERLCLEAYEGYLDRGRG
AIFVNVDMGLSSSRKGHDTAPCHAVFRSLEEVVMERSSRVKPADQMEIIQ
RCQAYDPEAAFVVVFGHKGMLGVQVMRPSLAPGELHRSRRA*
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mRNA from alignment at S-firma_F_contig11:16625..18993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11.1319.1 ID=mRNA_S-firma_F_contig11.1319.1|Name=mRNA_S-firma_F_contig11.1319.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2369bp|location=Sequence derived from alignment at S-firma_F_contig11:16625..18993+ (Sphaerotrichia firma ET2_F female)
TGTTCATGAAGGCGAGGAGACACAGCAACACCCTGACGACAATGGCACTC
TCGAGGAGTGCAGCGCTCCTCGTTTCGACGCTCGCATCATGCACCGTGAA
AGGAGTTTGGTCGTTCGTGCCGGCTGGTGCGACGCTTGCAAGAAGATGTC
CCACCAACCCAGCAGTGCGGGACACAGCAGCGACAAATCCAGCAGCGGCG
GGACCATCATCGTACATAGTGTGCCTGTCAAGTGCATCGCCTTTCGAGGG
CATCGAGCACGACAATAGCGACGACGAGGTCGACGTGGTGCAACGGGAGG
CTGAGCAACTGGAAGATTTGATCCGAGGCAGCCGTGGGATCGTGGTTGAG
GCGATCGAGCGAGAGTGGAGAGAGGAGATGCTGCGCGTGTTCGGCGACGA
GGGAGAGAGGCTGTGTTTAGAGGCCTACGAGGGGTACCTTGATCGCGGGC
GCGGCGCCATCTTTGTGAGTTCAGTCGCAGGACAGAGCATATTGGGTTGT
CTAAGGTTCTCATTGTCCACGGACGGTGTTGCTGTGTGACTTGTGACTTA
TGTGGATTATGTAGGCGACTGCGTACCGGCAGCACCGGCGCAGTTCTGCA
CTGCAACATGCTGACAGGCGCCTCTATGAATGGCGATAGACTGGTTACTA
AGGCGGTGGTCGTGGCAACACCCTACTGCTGCGTTTATGGCCTTTATGGC
ACCGTGCTTTGCTATCCCTGTAAGCCCAATGCCCTCTTTCTTGAAACACA
ATCATGGAATCCAAGACAGGCCCTCCCCAAATTAGAGACGCGGACTCCAT
GAGCTCTAGACAACTCTAGACAAACGGGTTCCGTGCAGTAATGTGGGTCC
GGCCGTGTAGGAAACCACCTGCACATTGAAAGAAATTCACCATCTCTTGT
TGGAAAACAATCATGGAATCTCCCTTTCTTTAGTTGCTCTGCTACATAGC
CTGCTATTTTTCACGCCGAAGTCGGAGAACGTGCACGGCAAGCATTCGCG
TTGGCAAAAGACAGCTTCTCACTAATATGCTGCAATGCGTGTAGGAGAAG
CAGAAACGAATACAGCAGTTGTATCGACGCTTCAGACGTTACACGGCGGT
ATGTCCTTCCCTCTATTTTCGCAAAGGTTAACGTGGACATGGGGCTTAGC
AGCAGCCGCAAGGGCCACGACACCGCCCCCTGCCATGCCGTGTTCCGCTC
TCTGGAGGAGGTAGTGATGGAGCGGTCTTCCAGGGTGAAGCCTGCAGACC
AGATGGAGATCATCCAAAGATGTCAGGCCTATGACCCGGAGGTGAGCACG
TGTGGGGCTACTTGGTTGGCTGCGGACGTGCTCCGGCAGCTGGCTGTTGC
TGCCTCTACTTTCCCCGGTCACACGCGTGACTGCGCTTTGGTATCTTCGA
GAAAAGCGCATACCTTAACCACGCCGTCCCCCGCCCCCCCCCCCCTCCGT
CTTCCCTCGCGTGGCGGCTTCAAACTTCTGGCTGTTGATGAAGGCGGCGT
TTGTGGTGGTATTCGGGCACAAGGGCATGCTTGGGGTGCAAGTGATGCGA
CCGTCACTCGCGCCGGGGGAGTTACACCGCAGTCGGCGGGCATGAATCTT
CCCACCGCTGTGGTTGTATATAGCAAGTGCGCATGAAGAGGAAGCTCACC
CCTGATGGCCGCGGTGACTTTGGGAGCGGTGTGCCGCCGTATGTGTAGCT
GTCAGTGGTTTTGGCCTAGAGAGGCTGTTTGTGTGAAGCTGGTTGCTTTT
GTCAACTTCTGGCCTCAAGTGCACACGTTGGGGTAGTACATACAGTACTC
GTCTTGATGTGCGGGGAGTGCCGTGGGTGGGTATGTAGGTTAGGTCATAG
GTCTGTTTCGTTCGTAGAGGACGTTGGTGCGTTTGTTACGGTCTTGTGCT
TTCTCAAGAGACAGAGAACAGCTTTGAGACGATTGAATTGAGCGAAACGG
CAACCCAGCCCACCGCAGGGGCCGCGAACCTGTAGTACGCAGTGAGCAGG
CCACTACCGTACCAAGAAACCCATTCCGCCCGGGTGATGTACTCGCGATC
GCTGCCACTTTCTTTTGTTCGGACGCACATCTGCGGGAGCCTTCGTTTCT
TGGGTGCCTTGCTGGCATTGTTGTTGTTGTTGTCGGAATGTGTAGCATTT
TAGAGCCTTCAACGGTCTGGAGCCGTGCGGGGCAATCGTATGAGCAGGCC
AACCTTGCAGATTGTACGGTTGAAAACACCGCTGGTCAAATCTTGTCACG
AAGCAAAGTTTCGCAACTAAAGACTGTATTTGTAGCCACGTCTCTCCCAT
CTCTTTTCGATCGCCAACCACACTTTCCCACTTGTCCCTCCGCGTAGATG
ATAACGGTGACGAGCAAAG
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Coding sequence (CDS) from alignment at S-firma_F_contig11:16625..18993+

>mRNA_S-firma_F_contig11.1319.1 ID=mRNA_S-firma_F_contig11.1319.1|Name=mRNA_S-firma_F_contig11.1319.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1452bp|location=Sequence derived from alignment at S-firma_F_contig11:16625..18993+ (Sphaerotrichia firma ET2_F female)
ATGAAGGCGAGGAGACACAGCAACACCCTGACGACAATGGCACTCTCGAG
GAGTGCAGCGCTCCTCGTTTCGACGCTCGCATCATGCACCGTGAAAGGAG
TTTGGTCGTTCGTGCCGGCTGGTGCGACGCTTGCAAGAAGATGTCCCACC
AACCCAGCAGTGCGGGACACAGCAGCGACAAATCCAGCAGCGGCGGGACC
ATCATCGTACATAGTGTGCCTGTCAAGTGCATCGCCTTTCGAGGGCATCG
AGCACGACAATAGCGACGACGAGGTCGACGTGGTGCAACGGGAGGCTGAG
CAACTGGAAGATTTGATCCGAGGCAGCCGTGGGATCGTGGTTGAGGCGAT
CGAGCGAGAGTGGAGAGAGGAGATGCTGCGCGTGTTCGGCGACGAGGGAG
AGAGGCTGTGTTTAGAGGCCTACGAGGGGTACCTTGATCGCGGGCGCGGC
GCCATCTTTATGAAGGCGAGGAGACACAGCAACACCCTGACGACAATGGC
ACTCTCGAGGAGTGCAGCGCTCCTCGTTTCGACGCTCGCATCATGCACCG
TGAAAGGAGTTTGGTCGTTCGTGCCGGCTGGTGCGACGCTTGCAAGAAGA
TGTCCCACCAACCCAGCAGTGCGGGACACAGCAGCGACAAATCCAGCAGC
GGCGGGACCATCATCGTACATAGTGTGCCTGTCAAGTGCATCGCCTTTCG
AGGGCATCGAGCACGACAATAGCGACGACGAGGTCGACGTGGTGCAACGG
GAGGCTGAGCAACTGGAAGATTTGATCCGAGGCAGCCGTGGGATCGTGGT
TGAGGCGATCGAGCGAGAGTGGAGAGAGGAGATGCTGCGCGTGTTCGGCG
ACGAGGGAGAGAGGCTGTGTTTAGAGGCCTACGAGGGGTACCTTGATCGC
GGGCGCGGCGCCATCTTTGTTAACGTGGACATGGGGCTTAGCAGCAGCCG
CAAGGGCCACGACACCGCCCCCTGCCATGCCGTGTTCCGCTCTCTGGAGG
AGGTAGTGATGGAGCGGTCTTCCAGGGTGAAGCCTGCAGACCAGATGGAG
ATCATCCAAAGATGTCAGGCCTATGACCCGGAGGTTAACGTGGACATGGG
GCTTAGCAGCAGCCGCAAGGGCCACGACACCGCCCCCTGCCATGCCGTGT
TCCGCTCTCTGGAGGAGGTAGTGATGGAGCGGTCTTCCAGGGTGAAGCCT
GCAGACCAGATGGAGATCATCCAAAGATGTCAGGCCTATGACCCGGAGGC
GGCGTTTGTGGTGGTATTCGGGCACAAGGGCATGCTTGGGGTGCAAGTGA
TGCGACCGTCACTCGCGCCGGGGGAGTTACACCGCAGTCGGCGGGCATGA
GCGGCGTTTGTGGTGGTATTCGGGCACAAGGGCATGCTTGGGGTGCAAGT
GATGCGACCGTCACTCGCGCCGGGGGAGTTACACCGCAGTCGGCGGGCAT
GA
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