mRNA_S-firma_F_contig11.1315.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11.1315.1
Unique NamemRNA_S-firma_F_contig11.1315.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11.1315.1 vs. uniprot
Match: A0A6H5JRM4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.340e-29
Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = 1 
Query:    4 PDLFRVVFRAGT---AVARTPSKRANPDGSVEWTQPLEIVVYNTSVKLVAVVQQFNFLKGWVIGPDRHFSGTSITALPDEWVHSPDLPTAPKFYAELRVNMEKDDH-----PPLGGID 333
            P LFRV FRAG+   A A T  K A+PDGSVEW + L+I VY+TS  L+AVVQQ N+L GW + PD  F G +++ LP+EW H+  +PTAP FYA+L V++E+        PP  G+D
Sbjct:   23 PGLFRVKFRAGSEGRAPAETVPKPADPDGSVEWLEALDITVYDTSFPLIAVVQQTNYLGGWSLVPDGRFEGAAVSELPNEWRHASSIPTAPTFYAQLSVHVEEGTQRNTRLPPFAGMD 140
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BLAST of mRNA_S-firma_F_contig11.1315.1 vs. uniprot
Match: D7FS71_ECTSI (Possible kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS71_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 6.200e-29
Identity = 61/118 (51.69%), Postives = 80/118 (67.80%), Query Frame = 1 
Query:    4 PDLFRVVFRAGT---AVARTPSKRANPDGSVEWTQPLEIVVYNTSVKLVAVVQQFNFLKGWVIGPDRHFSGTSITALPDEWVHSPDLPTAPKFYAELRVNME----KDDH-PPLGGID 333
            P LFRV FRAGT   + A T  K ANPDGSVEW + L+I V++TS  L+AVVQQ N+L GW + PD  F G +++ LP+EW H+  +PTAP FYA+L V++E    +D   PP  G+D
Sbjct:   23 PGLFRVKFRAGTEGRSPAETVPKPANPDGSVEWLETLDITVHDTSFPLIAVVQQTNYLGGWSLVPDGRFEGAAVSELPNEWRHASSIPTAPTFYAQLSVHVEGGTQRDTRLPPFAGMD 140
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11.1315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRM4_9PHAE3.340e-2950.85Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FS71_ECTSI6.200e-2951.69Possible kinase n=1 Tax=Ectocarpus siliculosus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11contigS-firma_F_contig11:3905..4318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FS71
PFAMsPkinase_Tyr
Max annot lvl2759|Eukaryota
Evalue1.02e-29
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Descriptionprotein kinase activity
COG categoryKLT
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.6969638-CDS-S-firma_F_contig11:3904..43181622815644.6969638-CDS-S-firma_F_contig11:3904..4318Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11 3905..4318 +
1696949474.965973-CDS-S-firma_F_contig11:3904..43181696949474.965973-CDS-S-firma_F_contig11:3904..4318Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11 3905..4318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11.1315.1prot_S-firma_F_contig11.1315.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11 3905..4318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11.1315.1

>prot_S-firma_F_contig11.1315.1 ID=prot_S-firma_F_contig11.1315.1|Name=mRNA_S-firma_F_contig11.1315.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=138bp
MPDLFRVVFRAGTAVARTPSKRANPDGSVEWTQPLEIVVYNTSVKLVAVV
QQFNFLKGWVIGPDRHFSGTSITALPDEWVHSPDLPTAPKFYAELRVNME
KDDHPPLGGIDDTDEDYRGLPMLCSPRALRYSGPHELN
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mRNA from alignment at S-firma_F_contig11:3905..4318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11.1315.1 ID=mRNA_S-firma_F_contig11.1315.1|Name=mRNA_S-firma_F_contig11.1315.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=414bp|location=Sequence derived from alignment at S-firma_F_contig11:3905..4318+ (Sphaerotrichia firma ET2_F female)
ATGCCAGATCTCTTCAGGGTGGTGTTCCGCGCCGGAACCGCGGTGGCGAG
GACGCCGTCCAAGCGAGCGAACCCCGACGGCTCGGTCGAGTGGACGCAGC
CGCTGGAAATCGTGGTGTACAACACGAGCGTCAAGCTGGTAGCCGTCGTC
CAGCAGTTCAACTTCCTCAAGGGCTGGGTCATAGGACCCGACCGCCACTT
CAGCGGCACCTCCATCACCGCGCTCCCCGATGAGTGGGTCCATTCGCCGG
ACCTCCCTACCGCCCCCAAGTTCTACGCGGAACTGAGGGTGAACATGGAG
AAAGACGACCATCCACCACTGGGAGGCATAGATGACACTGACGAAGACTA
CCGCGGGCTTCCCATGCTGTGCAGCCCGAGGGCCCTTCGCTACTCCGGGC
CTCATGAATTAAAC
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Coding sequence (CDS) from alignment at S-firma_F_contig11:3905..4318+

>mRNA_S-firma_F_contig11.1315.1 ID=mRNA_S-firma_F_contig11.1315.1|Name=mRNA_S-firma_F_contig11.1315.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=828bp|location=Sequence derived from alignment at S-firma_F_contig11:3905..4318+ (Sphaerotrichia firma ET2_F female)
ATGCCAGATCTCTTCAGGGTGGTGTTCCGCGCCGGAACCGCGGTGGCGAG
GACGCCGTCCAAGCGAGCGAACCCCGACGGCTCGGTCGAGTGGACGCAGC
CGCTGGAAATCGTGGTGTACAACACGAGCGTCAAGCTGGTAGCCGTCGTC
CAGCAGTTCAACTTCCTCAAGGGCTGGGTCATAGGACCCGACCGCCACTT
CAGCGGCACCTCCATCACCGCGCTCCCCGATGAGTGGGTCCATTCGCCGG
ACCTCCCTACCGCCCCCAAGTTCTACGCGGAACTGAGGGTGAACATGGAG
AAAGACGACCATCCACCACTGGGAGGCATAGATGACACTGACGAAGACTA
CCGCGGGCTTCCCATGCTGTGCAGCCCGAGGGCCCTTCGCTACTCCGGGC
CTCATGAATTAAACATGCCAGATCTCTTCAGGGTGGTGTTCCGCGCCGGA
ACCGCGGTGGCGAGGACGCCGTCCAAGCGAGCGAACCCCGACGGCTCGGT
CGAGTGGACGCAGCCGCTGGAAATCGTGGTGTACAACACGAGCGTCAAGC
TGGTAGCCGTCGTCCAGCAGTTCAACTTCCTCAAGGGCTGGGTCATAGGA
CCCGACCGCCACTTCAGCGGCACCTCCATCACCGCGCTCCCCGATGAGTG
GGTCCATTCGCCGGACCTCCCTACCGCCCCCAAGTTCTACGCGGAACTGA
GGGTGAACATGGAGAAAGACGACCATCCACCACTGGGAGGCATAGATGAC
ACTGACGAAGACTACCGCGGGCTTCCCATGCTGTGCAGCCCGAGGGCCCT
TCGCTACTCCGGGCCTCATGAATTAAAC
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