mRNA_S-firma_F_contig10998.1313.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10998.1313.1
Unique NamemRNA_S-firma_F_contig10998.1313.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10998.1313.1 vs. uniprot
Match: A0A024U1N5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U1N5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.790e-33
Identity = 63/125 (50.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    7 GSKMVFFGGWDG-KKSFNDLWVYDTDAKTWIKPKVSGSPPSPRHGHSSQLTSDGRILVYGGWAWNEEGSPTFCSDVRQLDTETMIWGRCRITGDLPSAGRYAH-GTCMLGDLMVMFGGFTGADRK 375
            G+K+V FGGWDG  K+F DLWV+DT++  WIKPKV+G+PP+PRHGH+  L  DGRILV+GG+         + +DV  LDTETM+W R R TGD P  G + H  T + G  + + GG++G +R 
Sbjct:  111 GNKLVIFGGWDGTNKTFKDLWVFDTESFAWIKPKVTGTPPTPRHGHTMVLLEDGRILVFGGYV-----DTHYFNDVYTLDTETMVWTRPRTTGDFP-VGTFGHTATVVDGCKLYVVGGWSGTERS 229          
BLAST of mRNA_S-firma_F_contig10998.1313.1 vs. uniprot
Match: A0A8K1FKE0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKE0_PYTOL)

HSP 1 Score: 126 bits (317), Expect = 6.410e-31
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 IQGSKMVFFGGWDGKKSFNDLWVYDTDAKTWIKPKVSGSPPSPRHGHSSQLTSDGRILVYGGWAWNEEGSPTFCSDVRQLDTETMIWGRCRITGDLPSAGRYAHGTCMLGDLMVMFGGFTGADR 372
            +    M+FFGGWDGKKS NDLW +DT+  TW KPK +G PP+PR  HS    +   ++VYGG+    E  P +  D+  LDTET+ W R R+TG+ P  G +    C+  +L ++ GG++G +R
Sbjct:  170 VDDQNMLFFGGWDGKKSMNDLWSFDTNTFTWHKPKCTGKPPTPRQDHSMLPIATDLVMVYGGYTVLPEALPAYNKDIFLLDTETLSWSRPRLTGEYP-LGTFGQTVCLQNELALLLGGWSGTER 292          
BLAST of mRNA_S-firma_F_contig10998.1313.1 vs. uniprot
Match: A0A7S1UIK9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIK9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.620e-30
Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 IQGSKMVFFGGWDGK-KSFNDLWVYDTDAKTWIKPKVSGSPPSPRHGHSSQLTSDGRILVYGGWAWNEEGSPTFCSDVRQLDTETMIWGRCRITGDLPSAGRYAHGTCMLGDLMVMFGGF 357
            + G K+V  GGWDG  +   D WV+DT   TWI+P++SG PPSPRHGH+  L  DGRI+ +GG   +  G P +  D RQLD E M W + R +G LPSA R  H   +LG+ +V+FGG+
Sbjct:  141 LVGRKIVLHGGWDGNTRCMGDTWVFDTATFTWIQPRISGLPPSPRHGHTLNLLPDGRIVCFGGAGVDNMGVPLYYDDFRQLDPEKMQWSKVRSSGMLPSA-RMGHTCVLLGNRLVLFGGW 259          
BLAST of mRNA_S-firma_F_contig10998.1313.1 vs. uniprot
Match: A0A067BWJ1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BWJ1_SAPPC)

HSP 1 Score: 124 bits (311), Expect = 3.480e-30
Identity = 58/126 (46.03%), Postives = 85/126 (67.46%), Query Frame = 1
Query:    7 GSKMVFFGGWDGK-KSFNDLWVYDTDAKTWIKPKVSGSPPSPRHGHSSQLTSDGRILVYGGWAWNE--EGSPTFCSDVRQLDTETMIWGRCRITGDLPSAGRYAHGTCMLGDLMVMFGGFTGADRK 375
            G+K+VFFGGWDG+ K+F DLWV+DT+   W++P V+G+PP+ R+GHS  L  DGRI++YGG +     E    + +D+  LDTETM W R R+TGD P    ++H   M+G  + + GG++G +R 
Sbjct:  151 GTKLVFFGGWDGQNKTFKDLWVFDTETFAWLQPHVAGTPPTARYGHSMALLDDGRIVLYGGQSVKTVPEVRVEYFNDLYTLDTETMAWMRPRVTGDQPIP-TFSHTMTMVGRTLYIVGGWSGTERS 275          
BLAST of mRNA_S-firma_F_contig10998.1313.1 vs. uniprot
Match: A0A485L7W0_9STRA (Aste57867_17468 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7W0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.650e-29
Identity = 63/150 (42.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:    7 GSKMVFFGG----------------------WDGK-KSFNDLWVYDTDAKTWIKPKVSGSPPSPRHGHSSQLTSDGRILVYGGWAWNEEG----SPTFCSDVRQLDTETMIWGRCRITGDLPSAGRYAHGTCMLGDLMVMFGGFTGADRK 375
            G+K+V FGG                      WDG  K++ DLWV+DT++  WIKPKV+G+PP+PRHGH+  L  DGRILV+GG+     G    S  +  DV  LDTETM W R R  GD P  G + H T + G  + + GG++G +R 
Sbjct:  148 GTKLVIFGGYSPLNPSDSTSDSVSDSNGQRRWDGSSKTYKDLWVFDTESFAWIKPKVTGTPPTPRHGHTMSLLEDGRILVFGGYMLQTSGGGDISGEYHKDVYTLDTETMAWTRPRTMGDFP-LGTFGHTTSLDGQKLYVVGGWSGTERS 296          
BLAST of mRNA_S-firma_F_contig10998.1313.1 vs. uniprot
Match: A0A1V9YGE9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGE9_9STRA)

HSP 1 Score: 121 bits (303), Expect = 4.540e-29
Identity = 57/126 (45.24%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    7 GSKMVFFGGWDGK-KSFNDLWVYDTDAKTWIKPKVSGSPPSPRHGHSSQLTSDGRILVYGGWAWN--EEGSPTFCSDVRQLDTETMIWGRCRITGDLPSAGRYAHGTCMLGDLMVMFGGFTGADRK 375
            G+K+V+FGGWDG+ K++ DLWV+DT+   WI+PKV+G+PP+ R+GH+  L  DGRI++YGG +     +    + +DV  LDTETM W R RITGD P    + H   + G  + + GG++G +R 
Sbjct:  144 GTKLVYFGGWDGQNKTYKDLWVFDTETFAWIQPKVAGTPPTARYGHTMGLLDDGRIVLYGGQSVKMLPQVGVEYFNDVYMLDTETMAWTRPRITGDQP-VPTFGHRMIIDGRTVYVVGGWSGTERS 268          
BLAST of mRNA_S-firma_F_contig10998.1313.1 vs. uniprot
Match: K3WMT4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMT4_GLOUD)

HSP 1 Score: 115 bits (287), Expect = 1.380e-26
Identity = 54/127 (42.52%), Postives = 75/127 (59.06%), Query Frame = 1
Query:    1 IQGSKMVFFGGWDGKKSFNDLWVYDTDAKTWIKPKVSGSPPSPRHGHSSQLTSDGRILVYGGWA--WNEEGSPTFCSDVRQLDTETMIWGRCRITGDLPSAGRYAHGTCMLGDLMVMFGGFTGADRK 375
            I  ++MV FGGWDGKKS NDLW++DT+  TW KPK +G  P+ RH HS    S   +LVYGG+     +   P +  DV  LDT T+ W R R+ G+ P  G +     +  +L  +FGG++G +R 
Sbjct:  167 IDDARMVLFGGWDGKKSMNDLWIFDTNTFTWTKPKCAGKFPTSRHNHSMVAISRETLLVYGGYTVLMPDVPLPVYNKDVYLLDTTTLTWSRPRLVGEYP-LGTFGQSVNVHDELAFVFGGWSGTERS 292          
BLAST of mRNA_S-firma_F_contig10998.1313.1 vs. uniprot
Match: F0YHJ5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHJ5_AURAN)

HSP 1 Score: 110 bits (276), Expect = 1.860e-25
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   31 GWDGKKS-FNDLWVYDTDAKTWIKPKVSGSPPSPRHGHSSQLTSDGRILVYGGWAWN-EEGSPTFCSDVRQLDTETMIWGRCRITGDLPSAGRYAHGTCMLGDLMVMFGGF 357
            GWDG+     DLWV+++D  TW++PK +G  PSPR+GH+  L SDGRIL YGG   + ++  P + +D+RQLDTETMIW +  I G  P + RY H T  +   + +FGG+
Sbjct:  139 GWDGRTHCMGDLWVFNSDTFTWVQPKSAGILPSPRYGHTLDLLSDGRILCYGGCNVSLKDPVPEYYNDLRQLDTETMIWTKPAIGGSCPPSKRYGHATAHMDFGLALFGGW 249          
BLAST of mRNA_S-firma_F_contig10998.1313.1 vs. uniprot
Match: A0A7S2V314_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V314_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.940e-25
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   58 DLWVYDTDAKTWIKPKVSGSPPSPRHGHSSQLTSDGRILVYGGWAWNEEGS--PTFCSDVRQLDTETMIWGRCRITGDLPSAGRYAHGTCM--LGDLMVMFGGFTGADRKDAAE 387
            DLWV+DTD+ TW+KP+V G  P PR+GH+  L  DGR+LV+GG    E+G   P + SD+RQLDTETM W + R TG +  +GR  H   +  +G  +V+FGG+     +D  +
Sbjct:    8 DLWVFDTDSFTWVKPRVGGLAPEPRYGHTLNLLPDGRLLVFGGMGLVEDGGFLPVYHSDLRQLDTETMQWSKPRRTG-VSVSGRMGHSATLAGIGSTVVVFGGWGLGGVQDRTQ 120          
BLAST of mRNA_S-firma_F_contig10998.1313.1 vs. uniprot
Match: A0A8J2SKS0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKS0_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.300e-25
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   31 GWDGK-KSFNDLWVYDTDAKTWIKPKVSGSPPSPRHGHSSQLTSDGRILVYGGWAWNEEGS-PTFCSDVRQLDTETMIWGRCRITGDLPSAGRYAHGTCMLGDLMVMFGGFTGADRKDAA 384
            GWDG  +   DLWV+++D  TW++P+ +G  PSPR+GHS  L +DGRIL +GG   +     P + +D+RQLDTETMIW +  I G  P + R+ H T  +G+ +++FGG+     ++ A
Sbjct:  147 GWDGHMQCMGDLWVFNSDTFTWVQPRCAGIQPSPRYGHSLSLLTDGRILCFGGCTVSSIFPVPQYHNDLRQLDTETMIWTKSTIQGGEPPSKRHGHTTTKVGNGLIVFGGWGSGGLQNRA 266          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10998.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024U1N5_9STRA1.790e-3350.40Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A8K1FKE0_PYTOL6.410e-3143.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1UIK9_9STRA1.620e-3048.33Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A067BWJ1_SAPPC3.480e-3046.03Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485L7W0_9STRA3.650e-2942.00Aste57867_17468 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YGE9_9STRA4.540e-2945.24Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
K3WMT4_GLOUD1.380e-2642.52Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0YHJ5_AURAN1.860e-2546.85Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2V314_9STRA1.940e-2545.61Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2SKS0_9STRA5.300e-2542.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10998contigS-firma_F_contig10998:3995..4795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog157072.XP_008871194.1
PFAMsKelch_1,Kelch_3,Kelch_4,Kelch_5
Max annot lvl2759|Eukaryota
KEGG koko:K20285
Evalue2.54e-33
EggNOG OGsKOG0379@1|root,KOG0379@2759|Eukaryota
Descriptionnitrile biosynthetic process
COG categoryP
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size674
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10998.1313.1prot_S-firma_F_contig10998.1313.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10998 4126..4780 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.41186-UTR-S-firma_F_contig10998:3994..41251622815644.41186-UTR-S-firma_F_contig10998:3994..4125Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10998 3995..4125 -
1696949474.837444-UTR-S-firma_F_contig10998:3994..41251696949474.837444-UTR-S-firma_F_contig10998:3994..4125Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10998 3995..4125 -
1622815644.4577844-UTR-S-firma_F_contig10998:4780..47951622815644.4577844-UTR-S-firma_F_contig10998:4780..4795Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10998 4781..4795 -
1696949474.8915784-UTR-S-firma_F_contig10998:4780..47951696949474.8915784-UTR-S-firma_F_contig10998:4780..4795Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10998 4781..4795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.4251163-CDS-S-firma_F_contig10998:4125..44391622815644.4251163-CDS-S-firma_F_contig10998:4125..4439Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10998 4126..4439 -
1696949474.8567169-CDS-S-firma_F_contig10998:4125..44391696949474.8567169-CDS-S-firma_F_contig10998:4125..4439Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10998 4126..4439 -
1622815644.4359744-CDS-S-firma_F_contig10998:4500..46161622815644.4359744-CDS-S-firma_F_contig10998:4500..4616Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10998 4501..4616 -
1696949474.8664222-CDS-S-firma_F_contig10998:4500..46161696949474.8664222-CDS-S-firma_F_contig10998:4500..4616Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10998 4501..4616 -
1622815644.4457035-CDS-S-firma_F_contig10998:4682..47801622815644.4457035-CDS-S-firma_F_contig10998:4682..4780Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10998 4683..4780 -
1696949474.8794017-CDS-S-firma_F_contig10998:4682..47801696949474.8794017-CDS-S-firma_F_contig10998:4682..4780Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10998 4683..4780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10998.1313.1

>prot_S-firma_F_contig10998.1313.1 ID=prot_S-firma_F_contig10998.1313.1|Name=mRNA_S-firma_F_contig10998.1313.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=176bp
MVFFGGWDGKKSFNDLWVYDTDAKTWIKPKVSGSPPSPRHGHSSQLTSDG
RILVYGGWAWNEEGSPTFCSDVRQLDTETMIWGRCRITGDLPSAGRYAHG
TCMLGDLMVMFGGFTGADRKDAAEPSATTKVCVPFFFVCVFVFLTTRPTP
LSPKPKPGGLQGRRPPTQTFTFWTL*
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mRNA from alignment at S-firma_F_contig10998:3995..4795-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10998.1313.1 ID=mRNA_S-firma_F_contig10998.1313.1|Name=mRNA_S-firma_F_contig10998.1313.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=801bp|location=Sequence derived from alignment at S-firma_F_contig10998:3995..4795- (Sphaerotrichia firma ET2_F female)
ATACAGGGCTCCAAAATGGTCTTCTTTGGCGGCTGGGACGGCAAGAAGTC CTTCAACGACCTGTGGGTGTACGACACGGACGCCAAGACGTGGATCAAGC CAAAGGTGTCAGGGTACGTTGGGGTCGTTTGGGGTGCCACGTTCCTGCCT CCCACACTTTCTCATACGTGGGTACACAGGTCGCCCCCTTCTCCCCGCCA CGGCCACTCCTCTCAGCTCACCTCCGACGGCCGGATCTTGGTGTACGGCG GGTGGGCGTGGAACGAGGAGGGCAGCCCCACATTTTGCAGCGACGGTACG TTGTAATGATTTTGTGTGCGATTTCAACTCTCGCACCTGACCACTTGTCC CCACAGTGCGCCAACTGGACACTGAAACCATGATTTGGGGGCGGTGCCGC ATCACCGGTGACCTGCCCAGCGCCGGGCGGTACGCCCACGGCACCTGCAT GCTGGGGGACCTCATGGTCATGTTTGGGGGCTTCACAGGTGCCGACCGGA AGGACGCCGCGGAGCCCTCTGCAACCACCAAGGTGTGTGTGCCGTTTTTT TTCGTGTGTGTGTTTGTGTTCCTGACCACACGTCCAACCCCCCTCAGTCC AAAACCAAAACCAGGCGGATTGCAGGGCCGCCGGCCACCCACCCAGACTT TTACTTTCTGGACACTGTGAGCATGGAGTGGACGCAGCCAGAGGCGGCTG GGGTGCAGCCCGGCACGCGGTACGGCCACAGCGTGACACCAGTGGGGTCG CACTTGTTGGTGTTTGGCGGCTGGGACGGCAGCAAGAGCCTCAGTGACGT C
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Coding sequence (CDS) from alignment at S-firma_F_contig10998:3995..4795-

>mRNA_S-firma_F_contig10998.1313.1 ID=mRNA_S-firma_F_contig10998.1313.1|Name=mRNA_S-firma_F_contig10998.1313.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1056bp|location=Sequence derived from alignment at S-firma_F_contig10998:3995..4795- (Sphaerotrichia firma ET2_F female)
ATGGTCTTCTTTGGCGGCTGGGACGGCAAGAAGTCCTTCAACGACCTGTG
GGTGTACGACACGGACGCCAAGACGTGGATCAAGCCAAAGGTGTCAGGAT
GGTCTTCTTTGGCGGCTGGGACGGCAAGAAGTCCTTCAACGACCTGTGGG
TGTACGACACGGACGCCAAGACGTGGATCAAGCCAAAGGTGTCAGGGTCG
CCCCCTTCTCCCCGCCACGGCCACTCCTCTCAGCTCACCTCCGACGGCCG
GATCTTGGTGTACGGCGGGTGGGCGTGGAACGAGGAGGGCAGCCCCACAT
TTTGCAGCGACGGTCGCCCCCTTCTCCCCGCCACGGCCACTCCTCTCAGC
TCACCTCCGACGGCCGGATCTTGGTGTACGGCGGGTGGGCGTGGAACGAG
GAGGGCAGCCCCACATTTTGCAGCGACGTGCGCCAACTGGACACTGAAAC
CATGATTTGGGGGCGGTGCCGCATCACCGGTGACCTGCCCAGCGCCGGGC
GGTACGCCCACGGCACCTGCATGCTGGGGGACCTCATGGTCATGTTTGGG
GGCTTCACAGGTGCCGACCGGAAGGACGCCGCGGAGCCCTCTGCAACCAC
CAAGGTGTGTGTGCCGTTTTTTTTCGTGTGTGTGTTTGTGTTCCTGACCA
CACGTCCAACCCCCCTCAGTCCAAAACCAAAACCAGGCGGATTGCAGGGC
CGCCGGCCACCCACCCAGACTTTTACTTTCTGGACACTGTGATGCGCCAA
CTGGACACTGAAACCATGATTTGGGGGCGGTGCCGCATCACCGGTGACCT
GCCCAGCGCCGGGCGGTACGCCCACGGCACCTGCATGCTGGGGGACCTCA
TGGTCATGTTTGGGGGCTTCACAGGTGCCGACCGGAAGGACGCCGCGGAG
CCCTCTGCAACCACCAAGGTGTGTGTGCCGTTTTTTTTCGTGTGTGTGTT
TGTGTTCCTGACCACACGTCCAACCCCCCTCAGTCCAAAACCAAAACCAG
GCGGATTGCAGGGCCGCCGGCCACCCACCCAGACTTTTACTTTCTGGACA
CTGTGA
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