mRNA_S-firma_F_contig10991.1306.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: F0YDP7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDP7_AURAN) HSP 1 Score: 110 bits (274), Expect = 9.420e-30 Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 1
Query: 1 DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
D+D GT+ F EFV V T+CMYS++DIL FCF +D+D S +DE EF+ L V +G PMFPGNF T L+ FD+NDDG+IDF
Sbjct: 2 DLDGSGTIEFDEFVAVLLTYCMYSKDDILRFCFDTYDRDHSNSIDEQEFMALLSSVNNGTPMFPGNFTTVLQNFDSNDDGIIDF 85
BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A8J2T1V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1V8_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.920e-26 Identity = 48/84 (57.14%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 1 DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
D+D GT+ F EF+ V T+CMY+++DIL FCF FDKD+S +DE+EF+ L V +GAP+FPGN TAL FD+NDDG+IDF
Sbjct: 214 DLDGSGTIEFDEFIAVLLTYCMYTKDDILRFCFDTFDKDKSNSIDENEFMALLSTVNNGAPLFPGNMGTALMNFDSNDDGLIDF 297
BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A7S3ZNR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNR4_9STRA) HSP 1 Score: 105 bits (262), Expect = 3.210e-25 Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1
Query: 1 DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
D+D + L F E+V V ++CMY+++DIL FCF +FD D G +DE EF ++C V++G P+F GNF+ ALE FDTNDDG+IDF
Sbjct: 177 DMDGNARLDFDEYVAVALSYCMYTKDDILKFCFDLFDLDSGGTIDEKEFTEMCVAVSAGDPLFSGNFRMALENFDTNDDGLIDF 260
BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A7S1U8X3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8X3_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 3.910e-21 Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 1 DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
D+D GT+ FSE+V V T+CMYS+EDIL F F F++LC+ + + APMFPGN+ TA++QFD NDDG+IDF
Sbjct: 138 DLDGSGTIEFSEYVRVLVTYCMYSKEDILRFAFDCXXXXXXXXXXXXXFMELCQGINNAAPMFPGNYSTAMKQFDVNDDGLIDF 221
BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A7S2S8V8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S8V8_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.060e-20 Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 1 DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLC-ECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
D D +GT++F E + V T+C++SQED+L+F F D+D +G LDE EF+ +C E A G +FPGN A QFDTNDDG+IDF
Sbjct: 164 DTDQNGTINFDEMMQVLTTYCIFSQEDVLNFVFAYHDRDGTGSLDEKEFINMCVEVNAEG--LFPGNLNRAFRQFDTNDDGMIDF 246
BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A7S1GD06_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD06_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 3.920e-19 Identity = 36/79 (45.57%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 19 TLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDFG 255
T++F EF+ + + Y ++DILD+CF+ FD+D SG +DEDEF+K+ + S P+FPGN + A+E+FD +DDG + +G
Sbjct: 187 TMTFDEFILILCRYNCYRKDDILDYCFKTFDRDNSGNIDEDEFMKMAMWLQSKQPIFPGNIQRAMEEFDVDDDGQLGYG 265
BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A836CE87_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE87_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.260e-18 Identity = 35/82 (42.68%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 7 DDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
D G L FS ++ + T+C++++ IL FCF +D + +G ++E F++L + V + +P+FPGNF+ ALE+FD N DG+IDF
Sbjct: 39 DPHGALDFSAWLVLVLTYCLFTRAQILQFCFSQYDSNNTGCINEFRFMELLDTVNNASPVFPGNFQLALEEFDQNKDGLIDF 120
BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A6G0WXQ6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXQ6_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 8.870e-17 Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 22 LSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVA-SGAPMFPGNFKTALEQFDTNDDGVID 249
L +FV + +F + SQ D++ FCF+ FD+D+SG L +DEF+ +CE + G F GNFK A+E FDTN DG++D
Sbjct: 113 LDIDDFVRIICSFVLLSQTDVIRFCFETFDEDDSGSLSKDEFIHMCESIQIRGEGFFKGNFKKAMEAFDTNHDGLLD 189
BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A397EMG9_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EMG9_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.710e-16 Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 22 LSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVA-SGAPMFPGNFKTALEQFDTNDDGVIDF 252
L +FV + TF + SQ DI FCF+ FD+D+SG L +DEF+ +C+ + G F GNFK A+E FD N DG++DF
Sbjct: 144 LDIDDFVRIVCTFALMSQTDIYRFCFETFDEDDSGSLSKDEFVVMCDSIQIKGDGFFQGNFKKAMEAFDANHDGLLDF 221
BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: W4H021_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H021_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 4.510e-16 Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 22 LSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVA-SGAPMFPGNFKTALEQFDTNDDGVIDF 252
L +FV + TF + SQ DI FCF FD+D+SG L +DEF+ +C+ + G F GNFK A+E FD N DG++DF
Sbjct: 238 LDIDDFVRIVCTFALMSQTDIYRFCFDTFDEDDSGSLSKDEFVVMCDSIQIKGDGFFQGNFKKAMEAFDANHDGLLDF 315 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10991.1306.1 >prot_S-firma_F_contig10991.1306.1 ID=prot_S-firma_F_contig10991.1306.1|Name=mRNA_S-firma_F_contig10991.1306.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=87bp DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLback to top mRNA from alignment at S-firma_F_contig10991:1501..1814+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10991.1306.1 ID=mRNA_S-firma_F_contig10991.1306.1|Name=mRNA_S-firma_F_contig10991.1306.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=314bp|location=Sequence derived from alignment at S-firma_F_contig10991:1501..1814+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10991:1501..1814+ >mRNA_S-firma_F_contig10991.1306.1 ID=mRNA_S-firma_F_contig10991.1306.1|Name=mRNA_S-firma_F_contig10991.1306.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=522bp|location=Sequence derived from alignment at S-firma_F_contig10991:1501..1814+ (Sphaerotrichia firma ET2_F female)back to top |