mRNA_S-firma_F_contig1099.1304.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig1099.1304.1 vs. uniprot
Match: D8LI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI60_ECTSI) HSP 1 Score: 805 bits (2080), Expect = 1.690e-261 Identity = 664/1361 (48.79%), Postives = 793/1361 (58.27%), Query Frame = 2
Query: 620 MPLLP-----DTVFSSDGAS--PSPYGIPPGLDSEGRRQTPDHARRTWKAYHERQALVAEKRQLSRPVNIDSILWGDLLGEKLAELIEGERNHPRTIVSGGAADRDGEHCLLPELDDGRVHSGHDQAVAAAVGKPKVLRFSAEGSEYTADDFGAGGDFTEMYERRYAGFDARTKKASGRAAERAWSRTGRPGDRAVGESHREKRSRERTSREAQSIPWDLGTNHAGSVTTPGTPSDGGRXXXXXXXXXXXXREGGIXXXXXXXXXXXLAGSFGNDLFAGDAASALAAGHDK-----GGQQLDSDLQSHPSPHIGPDTHCLIPDEVEEVHQMHDEERADGSNASLATQMQHRLVPMGGGAGGARKLRGTAAVERQELARVVMKDRYVEEAVRRN-RAVINGDNASGSGXXXXXXXXXXKANSTTCSVTTFEAYYTRATTAADALPTVERGLNEEQPDVIPEETRVXXXXXXXVV---LPPTPAALEKETKRAEXXXXXXARLEAKRDRVKRCVCKGAGS-------GAWNSTDRAMSAVTLYSNGSEAPSSTLPLRRTEGGGVGGSGFVDASDEISIAPSMSSLGSFDEQS-----GSAPV-LQHAQEADTTDRPLPAVLHLAAALDHTAGKNQNTNRRRSRRSRRSIPHALPSATITG--TGAGIEEGSTCYFPA-----TAASVERVLPMELERSSSRLGIAFGGAGKRXXXXXXXXXXXXTVGV-GLEDSPLAAEAS-QDIQNKPFASSGRPLTGSVGVSGAPTSSSTMAVA-SAALLKGKVNWWRGR--SKPPTKVPRRSPALTTLTVVDGLSRGAAGSSASSCSRWNSDCGDGRPARDASTVSMTS---------------PVSGAISREPPQELPAARAGVTDDEQSLTVSVTSSLTSLGGSVRGLIPVGPLAETDSSVAIF-APTLPASGSAAQARGRSVAGSATTVSLAAARGPVAGLXXXXXXXXXXXXXXXXXXXXXXXXTNGRLDSVEGSKSRKKQHEGGGTGA-----VQRVRKINLGSKRHQKSMQPAERTTLLIGACESGDLQALERLLELGASPLDPYSPSVEGSRCVFCQFFLFVLQQVGAGLRPRLAPDDSLHTRALAMLIEARLEGNPLFLSIPKLRDQD-NRGFCLLHHAAAFGNASKVEFLLERGVNPDERAGGEDETALLIAARRGQRLHLRVAAALIRSGATMFARDRKGMTALHHAADVGRKHMCHYLLLVGADKAAQDNEGRTPLDLCHGKHPRASAVLRSFAGCKPPPATILNYMEKVEVQGLDDSTAQELMLQEQAKRXXXXXXXXXXXXXXXXDPAGAADAIFGDDENSMASWDAASLGGM-SGDRASVLSLGTV 4510
MP+L D SD A PSPYG PGL + R TPD+AR+TWKAYHERQAL+A +RQ SRPV +D ++WGDL+G+KLAELIEGERNHPR++V GGAADRDG HCLLPELDD +HSGH+QAVAAAVGKPK LRFSAEGSEYTADDFGAGG F EMY+RRYAGF K+A G AA+RA SR G P D+ ES+RE+RSRE+TSREA++IPWDLG A + XXXXXXXXXXXX XX XXXXXXX FG+DLFAGDAA+ L ++ GQ+ D+DL++HP PHIGPD H L+PDEVE V + H EE ADG +AS A QMQHRLV +GG A G KLRGTAA ER+E AR+ +KDRY+EEAVRRN RA +G XXX ST+CSV TFE +Y ++T AADALP VE +N E+ E XXXXXXX V +P A+ XX ARLE KR++ +R GS GA S D + + E G D D+ S+ PS+SSLG++DE+S G AP LQ+ QE + R IP PS T TG G++ Y + ++ E R+ SRLGIAFGGA K XXXXXXXXX ++G G +PL AS I +P A + P VG+ G TSS+ +A + ALLKGK+ WR R S PT P S LT VVD R SRW+S P V+M P L + G D E++L+ S ++S +SL GS + + G + S + PTL GS A+ SVAG P+AG GR D + +R+K+ G +GA QRV KINLGSK+ Q +M A+RT LLIGACE GDL+AL+RLLELGASPLD YSPSVE SRCVFCQFFLF+LQ VGAGLR RLAPDDSLH RAL+MLI+ LE N FLS P+LRDQD RGFCL+HHAAAFGNA+KVEFLL+RGV+PD RA G DETAL++AARRG+R HLRVAAALI++GA ARDR G T LHHAA GRKHMCHYLLLV +D C +HPRA AV++SF +PPPATIL+YMEKVEV G AQEL+L +QA+ XXXXXXXXXX AG GD E+SM SWDAASLGGM SG ASVLSLG++
Sbjct: 1 MPMLAAVAETDEAVGSDDAGWPPSPYGASPGL-AGAPRATPDYARKTWKAYHERQALLAGRRQYSRPVEVDPVVWGDLIGKKLAELIEGERNHPRSVVRGGAADRDGGHCLLPELDDIHLHSGHEQAVAAAVGKPKFLRFSAEGSEYTADDFGAGGGFDEMYQRRYAGFSPLIKQAGGLAAKRARSRAGYPDDQV--ESYRERRSREKTSREAEAIPWDLGAARAAAXXXXXXXXXXXXXXXXXXXXXXXXX---XXXWSXXXXXXXXXXXFGDDLFAGDAAAVLQQSAEQQENKNDGQRPDADLEAHPIPHIGPDAHRLLPDEVEAVLRGHAEESADGYDASFAAQMQHRLVSVGGSAEGM-KLRGTAARERRERARLGLKDRYLEEAVRRNHRAASHG----------YDDEXXXXNASTSCSVATFEDFYIKSTQAADALPVVEGRMNAEETKGASMEAPXXXXXXXXXVEEVMPSPEEAIRXXXXXXXXXAERVARLELKREQARRGTTSLDGSSISTDPPGAETSLDGGPPSGEILXXXXXXXXXXXXXXXXEVG--------DPEDDASLDPSVSSLGTYDERSRGGSGGGAPRNLQNLQEPTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLA-DIPPTPPSPTAASVSTGGGVQSAVLSYSTGDVPTGSGVGLDGGGLAERGRNLSRLGIAFGGASKXXXXXXXXXXS--SIGASGAALAPLGPAASGSSIGLQPLAPATIPA---VGIDGNGTSSTGAVIAPTVALLKGKIKGWRRRKLSAAPTVPPPLSATLTP--VVDDDRR---------LSRWSSRA-SASPGALLPLVAMADGXXXXXXXXXXXXXXXXXXXXXXXXPMALIPVKVGTMDGERTLSDSQSAS-SSLAGSTQAALISGTVDXXXXSRTVSETPTL---GSKAEG---SVAGGXXXXXXXX-XAPIAG-----GVPGMGQAGAGMDGGGGSAAARGRYDVGDPQMNREKRRSGRRSGADNGGNTQRVHKINLGSKKDQMTMTHADRTALLIGACEWGDLEALQRLLELGASPLDLYSPSVEESRCVFCQFFLFLLQ-VGAGLRSRLAPDDSLHDRALSMLIQPSLEENRRFLSKPQLRDQDVGRGFCLVHHAAAFGNANKVEFLLQRGVDPDARARGGDETALMVAARRGKRTHLRVAAALIKAGANKLARDRSGRTPLHHAASAGRKHMCHYLLLVXXXXXXXXXXXXXXMDACRAEHPRAFAVMQSFVSRRPPPATILDYMEKVEVHG----HAQELLLCQQAEAVXXXXXXXXXXLV-----AG------GDGEDSMTSWDAASLGGMVSGTGASVLSLGSL 1289
BLAST of mRNA_S-firma_F_contig1099.1304.1 vs. uniprot
Match: A0A6H5JK81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK81_9PHAE) HSP 1 Score: 792 bits (2045), Expect = 4.730e-253 Identity = 651/1360 (47.87%), Postives = 791/1360 (58.16%), Query Frame = 2
Query: 635 DTVFSSD-GASPSPYGIPPGLDSEGRRQTPDHARRTWKAYHERQALVAEKRQLSRPVNIDSILWGDLLGEKLAELIEGERNHPRTIVSGGAADRDGEHCLLPELDDGRVHSGHDQAVAAAVGKPKVLRFSAEGSEYTADDFGAGGDFTEMYERRYAGFDARTKKASGRAAERAWSRTGRPGDRAVGESHREKRSRERTSREAQSIPWDLGTNHAGSVTTPGTPSDGGRXXXXXXXXXXXXREGGIXXXXXXXXXXXLAGS-FGNDLFAGDAASALAAGHDK-----GGQQLDSDLQSHPSPHIGPDTHCLIPDEVEEVHQMHDEERADGSNASLATQMQHRL-----------------VPMGGGAGGARKLRGTAAVERQELARVVMKDRYVEEAVRRNR-------AVINGDNASGSGXXXXXXXXXXKANSTTCSVTTFEAYYTRATTAADALPTVERGLNEEQPDVIPEETRVXXXXXXXVVLPPTPAALEKETKRAEXXXXXXARLEAKRDRVKRCVCKGAGSGAWNSTDRAMSAVTLYSNGSEAPSSTLPLRRTEGGGVGGSGFVDASDEISIAPSMSSLGSFDEQS-----GSAPVLQHAQEADTTDRP------LPAVLHLAAALDHTAGKNQNTNRRRSRRSRRSIPHALPSATITG--TGAGIEEGSTCYFPA-----TAASVERVLPMELERSSSRLGIAFGGAGKRXXXXXXXXXXXXTVGVGLEDSPLAAEASQ-DIQNKPFASSGRPLTGSVGVSGAPTSSSTMAVA-SAALLKGKVNWWRGR--SKPPTKVPRRSPALTTLTVVDGLSRGAAGSSASSCSRW-----------NSDCGDGRPARDASTVSMTSPVSGAISREPPQELPAARAGVTDDEQSLTVSVTSSLTSLGGSVRGLIPVGPLAETDSSVAIFAPTLPASGSAAQARGRSVAGSATTVSLAAARGPVAGLXXXXXXXXXXXXXXXXXXXXXXXXTNGRLDSVEGSKSRKKQHEGGGTGAVQRVRKINLGSKRHQKSMQPAERTTLLIGACESGDLQALERLLELGASPLDPYSPSVEGSRCVFCQFFLFVLQQVGAGLRPRLAPDDSLHTRALAMLIEARLEGNPLFLSIPKLRDQDN-RGFCLLHHAAAFGNASKVEFLLERGVNPDERAGGEDETALLIAARRGQRLHLRVAAALIRSGATMFARDRKGMTALHHAADVGRKHMCHYLLLVGADKAAQDNEGRTPLDLCHGKHPRASAVLRSFAGCKPPPATILNYMEKVEVQGLDDSTAQELMLQEQAKRXXXXXXXXXXXXXXXXDPAGAADAIFGDDENSMASWDAASLGGM---SGDRASVLSLGTV 4510
+ V S D G PSPYGI GL + R TPD+AR+TWKAYHERQAL+A +RQ SRPV +D ++WGDL+G KLAELIEGERNHPR++V GGAADRDG HCLLPELDD R+HSGH+QAVAAAV KPK LRFSAEGSEYTADDFGAGG F EMY+R F A K+ G AA+RA +R G P D+ ESHRE RS E+TSREA++IPW+LG A + XXXXXXXXX XXXXXXXXXX + GS FG+DLFAGDAA+ L ++ GQ D+DL++HP PHIGPD+H L+PDEVE V + H EE DG +AS A QMQHRL V +GGGA G +KLRGTAA ER+E AR +KDRY+EEAVRR A + + + ST+CSV TFE +Y ++T AADALP VE +N E ET+ + A + K+ +R E ARLE KR++ +R K + G+ S D +L L RR G D D+ S+ PS+SSLG++DE S G+ LQ +E + LPAVL L +A D A + + RRRSR + +P PS T TG G++ Y + ++ E R+ SRLGI FGGA XXXXXXXXXXX G + L AS I +P A + P +G G TSS+ A A + ALLKGK+ WR R S PT P S LT VVD R + GSS +S S +S ARD + P L + G D E++L+ S S+++SL GS + + G + +V+ P+ GS A+ + AGS A P+AG XXXXXXX +G + K R + G TG QRV KINLGSK+ Q +M A+RT LLIGACE GDL+AL+RLLELGASPLD YSPSVEGSRCVFCQFFLF+LQ VGAGLR RLA DDSLH RAL+MLI+ LE N FLS P+LRDQD RGFCL+HHAAAFGNA+KVEFLL+RGV+PD RA G DETAL++AARRGQR HL VAAALI++GA ARDR G T LHHAA GRKHMCHYLLLV +D C HPRA AV++SF +PPPATIL+YMEKVEV G AQE++L++ XXXXXXXXXXXXXXX +SMASWDAASLGGM +G +SVLSLG++
Sbjct: 273 EAVGSDDAGRPPSPYGISLGL-AGAPRATPDYARKTWKAYHERQALLAGRRQYSRPVEVDPVVWGDLIGRKLAELIEGERNHPRSVVRGGAADRDGGHCLLPELDDIRLHSGHEQAVAAAVCKPKFLRFSAEGSEYTADDFGAGGGFDEMYQR----FSALIKQVGGLAAKRARTRAGYPDDQV--ESHRESRSSEKTSREAEAIPWELGAARAAAPXX------------XXXXXXXXXXXXXXXXXXXXXXXXTIGGSEFGDDLFAGDAAAVLQRSAEQQENKNDGQLPDADLKAHPIPHIGPDSHRLLPDEVEAVLRGHAEESVDGYDASFAAQMQHRLRSLRSSKRGVWFCMWGLVSVGGGAEGMKKLRGTAARERRERARPGLKDRYLEEAVRRQERRSHIAPAKVERWRNHRAASDDYDDEDDDQNASTSCSVATFEDFYLKSTQAADALPVVEGRMNAE-------ETKGASMEAPPPLAKVEEATIRKQQRREERRAERVARLELKREQARRG--KTSLDGSSISADPPGGETSLDGGPPSGEILVLLPRRKIGXXXXXXXVGDPEDDASLDPSVSSLGTYDEHSLSGSSGAPRNLQSLEEPPSAKATGGGGGRLPAVLPLPSAAD-VAEEIRRRPRRRSRLA--DVPPTPPSPTAASVSTGGGVQSAVVSYSTGDVPTGSGVGLDGGALAERGRTLSRLGILFGGASXXXXXXXXXXXXXSIGASGAALAALGPAASGCSIGLQPLAPATVPA---IGFDGNGTSSAGAAAAPTVALLKGKIKGWRRRKLSAAPTVPPPLSATLTP--VVDXXRRLSRGSSCASTSPGALLPLVAMADGDSXXXXXXXARDIAXXXXX------XXXXXPMALIPVKVGTMDGERTLSDS-PSAISSLAGSTQAALTSGSV--DSGTVSRTVSGTPSLGSEAETS--ATAGSXXXXXXXXA--PIAGGVPGMGQAGAGMDGXXXXXXXARGQHDGDQPKMTRKKRRSGRRSGADTGNTQRVHKINLGSKKDQMTMTHADRTALLIGACEWGDLEALQRLLELGASPLDLYSPSVEGSRCVFCQFFLFLLQ-VGAGLRSRLAMDDSLHDRALSMLIQPSLEKNRRFLSGPQLRDQDEGRGFCLVHHAAAFGNANKVEFLLQRGVDPDVRARGGDETALMVAARRGQRPHLEVAAALIKAGADKLARDRSGRTPLHHAASAGRKHMCHYLLLVXXXXXXXXXXXXXXMDACRTGHPRAFAVMQSFISRRPPPATILDYMEKVEVHG----HAQEVLLRQXXXXXXXXXXXXXXXXXXX---------------DSMASWDAASLGGMVSGTGAISSVLSLGSL 1563
BLAST of mRNA_S-firma_F_contig1099.1304.1 vs. uniprot
Match: W6Y8J6_COCCA (Uncharacterized protein (Fragment) n=1 Tax=Bipolaris zeicola 26-R-13 TaxID=930089 RepID=W6Y8J6_COCCA) HSP 1 Score: 57.8 bits (138), Expect = 4.030e-6 Identity = 43/115 (37.39%), Postives = 60/115 (52.17%), Query Frame = 2
Query: 3830 LRDQDNRGFCLLHHAAAFGNASKVEFLLERGVNPDERAGGEDETALLIAARRGQRLHLRVAAALIRSGATMFARDRKGMTALHHAADVGRKHMCHYLLLVGADKAAQDNEGRTPL 4174
+ D+ +RG LLH AA G VE+LL G +P A E L +AA L A L ++GA + A + +G T L AA G++ + +LLL+GAD A D G TP+
Sbjct: 1 MSDRTHRGRTLLHIAANNGQYEIVEWLLSLGADPSV-ADKEGWMPLHLAATAD----LATAKLLYQAGADVHAYNNQGCTVLRIAASQGQREIVEWLLLLGADPHATDENGWTPI 110
BLAST of mRNA_S-firma_F_contig1099.1304.1 vs. uniprot
Match: UPI00190C621C (ankyrin repeat domain-containing protein n=1 Tax=Luteolibacter yonseiensis TaxID=1144680 RepID=UPI00190C621C) HSP 1 Score: 58.9 bits (141), Expect = 7.300e-6 Identity = 50/137 (36.50%), Postives = 61/137 (44.53%), Query Frame = 2
Query: 3851 GFCLLHHAAAFGNASKVEFLLERGVNPDERAGGEDETALLIAARRGQRLHLRVAAALIRSGATM------------FARD--RKGMTALHHAADVGRKHMCHYLLLVGADKAAQDNEGRTPLDLCHGKHPRASAVLR 4219
G L AA G A EFLLERG + D ET L A + R+ L+ +GA + FARD +G T LH AA G M L+ GADKAA+D G +PL H R + VLR
Sbjct: 36 GSSALEAAAYHGKAEACEFLLERGADADACHEPTGETVLHQAITKRDAERTRIVELLVAAGAEVNRRTVPGVVTQSFARDIRTRGETPLHRAAAYGDVEMIRILVSAGADKAARDAHGESPLTWASW-HLRENDVLR 171
BLAST of mRNA_S-firma_F_contig1099.1304.1 vs. uniprot
Match: L1JTP5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JTP5_GUITC) HSP 1 Score: 57.8 bits (138), Expect = 9.170e-5 Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 2
Query: 4019 LIRSGATMFARDRKGMTALHHAADVGRKHMCHYLLLVGADKAAQDNEGRTPLDLCHGKHPRASAVLRSF 4225
LI+ GA + AR+++G ALH AA GRK + L+ GAD A+ +G TPL L +G HP +LRS
Sbjct: 232 LIKEGARLEARNKRGWQALHCAASSGRKEIVEILVAAGADIDAETQDGETPLRLANG-HPDVEDILRSL 299 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1099.1304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1099.1304.1 >prot_S-firma_F_contig1099.1304.1 ID=prot_S-firma_F_contig1099.1304.1|Name=mRNA_S-firma_F_contig1099.1304.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=1306bp MPLLPDTVFSSDGASPSPYGIPPGLDSEGRRQTPDHARRTWKAYHERQALback to top mRNA from alignment at S-firma_F_contig1099:11631..23142+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1099.1304.1 ID=mRNA_S-firma_F_contig1099.1304.1|Name=mRNA_S-firma_F_contig1099.1304.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=11512bp|location=Sequence derived from alignment at S-firma_F_contig1099:11631..23142+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1099:11631..23142+ >mRNA_S-firma_F_contig1099.1304.1 ID=mRNA_S-firma_F_contig1099.1304.1|Name=mRNA_S-firma_F_contig1099.1304.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=7836bp|location=Sequence derived from alignment at S-firma_F_contig1099:11631..23142+ (Sphaerotrichia firma ET2_F female)back to top |