mRNA_S-firma_F_contig10981.1294.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig10981.1294.1 vs. uniprot
Match: A0A1V9ZNG7_9STRA (DUF1084 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZNG7_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.790e-20 Identity = 57/193 (29.53%), Postives = 96/193 (49.74%), Query Frame = 1
Query: 91 YVLDQFPSLLFFSLYTVLASSWASVYFTSQDKAHLHNTCARPSVVAVNVVVYLAQVAAWVVYR--WKYWSHPNWSLLAAGCHAFA---FVCVAXXXXGLGLRVYRLIHDVPLNVAVRRRKLADLWLSVVLCTACFCVRAGAIVAVAVTFHEDDKFVVGTFSLWDGLAFVGYYALCEMLPASVILYLYRNTPPP 654
Y DQFP+LLFFS+Y ++ WA +Y+ + D+ +P+ + +++ Y+ Q+A WV+Y W+Y H + G A+ F + G Y + VP+++ VR +KL ++ L +CT CF R+ + V + D + W L V YY++ E+LP + IL+ +R P P
Sbjct: 99 YFADQFPNLLFFSIYLLMGMFWAEIYYNATDQIDFFGYVVKPTAITIHLCAYILQIALWVLYADPWRYEDH----YIGRGYAAYTTTMFAIITIAFLCYGRLAYVELRAVPVDLGVRSKKLKEVTLMTSICTTCFTSRS-----IIVLYLAQDHVQLQHHLTW--LVIVLYYSILELLPITAILHFHRRFPRP 280
BLAST of mRNA_S-firma_F_contig10981.1294.1 vs. uniprot
Match: F0YAT5_AURAN (DUF1084 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAT5_AURAN) HSP 1 Score: 87.0 bits (214), Expect = 3.770e-17 Identity = 64/223 (28.70%), Postives = 105/223 (47.09%), Query Frame = 1
Query: 4 VRATFFFLSPD---WNGVYFFVVMDRANQWPLYVLDQFPSLLFFSLYTVLASSWASVYFTSQDKAHLHNTCARPSVVAVNVVVYLAQVAAWVVY--RWK---YWSHPNWSLLAAGCHAFAFVCVAXXXXGLGLRVYRLIHDVPLNVAVRRRKLADLWLSVVLCTACFCVRAGAIVAVAVTFHEDDKFVVGTFSLWDGLAFVGYYALCEMLPASVILYLYRNTP 648
VRATFF LS W A YV D+ P+++FF++YT + WA +Y+ + D A ++ +P VN Y+ V W+++ RW Y+ + +++ + +VC A G + +H VP+ + +RR+KL ++ + TA RA V V F + V F+++ LA V Y+ E+LP ++LY YR P
Sbjct: 39 VRATFFCLSMKTWGWTSGDLSAAEPMARM-AFYVCDELPTMVFFTVYTAVTLFWAEMYYIASDAARIYEDTVQPVDSVVNTAAYVFLVGLWLLFATRWADYVYYVNRAYAIFVS----VLYVCTAALLFAFGRSAAKELHQVPIELQMRRKKLREVSVMTTAITASMVGRA----LVLVAFADQPLPVNSLFAVF--LASV-YFGALELLPVVLVLYYYRRMP 249
BLAST of mRNA_S-firma_F_contig10981.1294.1 vs. uniprot
Match: A0A803R8R7_CANSA (DUF1084 domain-containing protein n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A803R8R7_CANSA) HSP 1 Score: 84.0 bits (206), Expect = 1.210e-15 Identity = 66/225 (29.33%), Postives = 110/225 (48.89%), Query Frame = 1
Query: 1 TVRATFFFLSPDWNGVYFFVVMDRANQWPL------YVLDQFPSLLFFSLYTVLASSWASVYFTSQDKAHLHNTCARPSVVAVNVVVYLAQVAAWVVYRWKYWSHPNWSLLAAGCHAFAFVCVAXXXXGL--GLRVYRLIHDVPLNVAVRRRKLADLWLSVVLCTACFCVRAGAIVAVAVTFHEDDKFVVGTFSLWDGLAFVGYYALCEMLPASVILYLYRNTPP 651
T + F FL+ NGV FV R + L ++L PSL+FF+ Y +L WA +Y+ ++ + RPS +++N V+Y+ Q+A W+V WK P ++ FA V + L G R++ ++ P+ RR+KL ++ +C +CF +R + V F+ DK L + + YY L E+LP+S++L++ R PP
Sbjct: 85 TTQKVFHFLNFVVNGVRAFVFGFRRDVQKLQPEIAQHILLDMPSLVFFTTYALLVLFWAEIYYQARA---VSTDGLRPSFLSINAVIYVIQIALWLVSWWK----PIRLVVILSKIFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRC-----IMVCFNVFDK-AADLDVLDHPILNLIYYVLVEILPSSLVLFILRKLPP 296
BLAST of mRNA_S-firma_F_contig10981.1294.1 vs. uniprot
Match: A0A0S3R0Q4_PHAAN (DUF1084 domain-containing protein n=22 Tax=NPAAA clade TaxID=2231382 RepID=A0A0S3R0Q4_PHAAN) HSP 1 Score: 83.6 bits (205), Expect = 1.410e-15 Identity = 68/227 (29.96%), Postives = 110/227 (48.46%), Query Frame = 1
Query: 1 TVRATFFFLSPDWNGVYFFVVMDRANQWPL------YVLDQFPSLLFFSLYTVLASSWASVYFTSQDKAHLHNTCARPSVVAVNVVVYLAQVAAWVVYRWKYWSHPNWSLLAAGCHAFAFVCVAXXXXGL--GLRVYRLIHDVPLNVAVRRRKLADLWLSVVLCTACFCVRAGAIVAVAVTFHEDDKFVVGTFSLWDG--LAFVGYYALCEMLPASVILYLYRNTPP 651
T + F FL+ NGV FV + R + L ++L PSL FF+ Y +L WA +Y+ ++ + RPS +N VVY+ Q+A W++ WK P L+ FA V + L G R++ ++ P+ RR+KL ++ +C +CF +R V + F+ D+ + D L F+ YY L E+LP+S++L++ R PP
Sbjct: 71 TTQKVFHFLNFLVNGVRCFVFVFRRDVQKLQPEIVQHILLDVPSLAFFTTYALLVLFWAEIYYQARA---VSTDGLRPSFYTINAVVYVIQIALWLILWWK----PISVLVILSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRC-----VMMCFNAFDR--AADLDVLDHPILNFI-YYLLVEILPSSLVLFILRKLPP 282
BLAST of mRNA_S-firma_F_contig10981.1294.1 vs. uniprot
Match: A0A4P1RVV4_LUPAN (DUF1084 domain-containing protein n=4 Tax=Lupinus TaxID=3869 RepID=A0A4P1RVV4_LUPAN) HSP 1 Score: 83.2 bits (204), Expect = 1.510e-15 Identity = 68/225 (30.22%), Postives = 107/225 (47.56%), Query Frame = 1
Query: 1 TVRATFFFLSPDWNGVYFFVVMDRANQWPL------YVLDQFPSLLFFSLYTVLASSWASVYFTSQDKAHLHNTCARPSVVAVNVVVYLAQVAAWVVYRWKYWSHPNWSLLAAGCHAFAFVCVAXXXXGL--GLRVYRLIHDVPLNVAVRRRKLADLWLSVVLCTACFCVRAGAIVAVAVTFHEDDKFVVGTFSLWDGLAFVGYYALCEMLPASVILYLYRNTPP 651
T + F FL+ N V V + R + L ++L PSL FF+ YT+L WA +Y+ ++ + RPS +N VVY+ Q+A W++ WK P L+ FA V + L G R++ ++ P+ RR+KL ++ +C +CF VR V + F+ DK L F+ YY L E+LP+S++L++ R PP
Sbjct: 52 TTQKLFHFLNFFVNAVRCSVFIFRRDVHKLQPDIVQHILVDMPSLAFFTTYTLLVLFWAEIYYQARA---VPTDGLRPSFYTINAVVYIVQIALWLILWWK----PVSVLVIVSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFFVRC-----VMMCFNAFDKAADLDVLNHSILNFI-YYLLVEILPSSLVLFILRKLPP 263
BLAST of mRNA_S-firma_F_contig10981.1294.1 vs. uniprot
Match: M5XYR5_PRUPE (DUF1084 domain-containing protein n=10 Tax=Amygdaloideae TaxID=171637 RepID=M5XYR5_PRUPE) HSP 1 Score: 83.2 bits (204), Expect = 2.020e-15 Identity = 66/223 (29.60%), Postives = 104/223 (46.64%), Query Frame = 1
Query: 1 TVRATFFFLSPDWNGVYFFVVMDRANQWPLY------VLDQFPSLLFFSLYTVLASSWASVYFTSQDKAHLHNTCARPSVVAVNVVVYLAQVAAWVVYRWKYWSHPNWSLLAAGCHAFAFVCVAXXXXGLGLRVYRLIHDVPLNVAVRRRKLADLWLSVVLCTACFCVRAGAIVAVAVTFHEDDKFVVGTFSLWDGLAFVGYYALCEMLPASVILYLYRNTPP 651
T + F FL+ N V V + R L+ +L PSL FF+ Y +L WA +Y+ ++ + RPS +N VVY+ Q+A W++ WK P +LA A + A G R++ ++ P+ RR+KL ++ +C ACF VR + + F+ DK L F+ YY L E+LP+S++L++ R PP
Sbjct: 74 TTQKVFHFLNFVVNAVRAAVFIFRRQVQKLHPEIVKHILLDMPSLAFFTTYALLVLFWAEIYYQARA---VSTDGLRPSFFTINAVVYVIQIAMWLILWWK--PIPVLLILAKMFFAGVSLFAAVGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFACFLVRC-----IMMCFNAFDKAADLDVLNHPILNFI-YYLLVEILPSSLVLFILRKLPP 285
BLAST of mRNA_S-firma_F_contig10981.1294.1 vs. uniprot
Match: A0A6P5NJ62_ARADU (tobamovirus multiplication protein 3 n=2 Tax=Arachis TaxID=3817 RepID=A0A6P5NJ62_ARADU) HSP 1 Score: 83.2 bits (204), Expect = 2.150e-15 Identity = 68/225 (30.22%), Postives = 107/225 (47.56%), Query Frame = 1
Query: 1 TVRATFFFLSPDWNGVYFFVVMDRANQWPL------YVLDQFPSLLFFSLYTVLASSWASVYFTSQDKAHLHNTCARPSVVAVNVVVYLAQVAAWVVYRWKYWSHPNWSLLAAGCHAFAFVCVAXXXXGL--GLRVYRLIHDVPLNVAVRRRKLADLWLSVVLCTACFCVRAGAIVAVAVTFHEDDKFVVGTFSLWDGLAFVGYYALCEMLPASVILYLYRNTPP 651
T + F FL+ NGV V + R N ++L PSL FF+ Y +L WA +Y+ ++ + RPS ++N VVY+ Q+A W++ WK P LL FA V + L G R++ ++ P+ RR+KL ++ +C +CF VR ++ F ED V L+ + YY L E+LP+S++L++ R PP
Sbjct: 79 TTQKVFHFLNFLVNGVRCLVFVFRRNVQKFQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARA---VSTDGLRPSFYSINAVVYVIQLALWLLLWWK----PIRVLLILSKVFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRC--VMMCFDAFDEDADLDV----LYHPILNFIYYLLVEILPSSLVLFILRKLPP 290
BLAST of mRNA_S-firma_F_contig10981.1294.1 vs. uniprot
Match: A0A6I9S165_ELAGV (tobamovirus multiplication protein 3 n=5 Tax=Arecaceae TaxID=4710 RepID=A0A6I9S165_ELAGV) HSP 1 Score: 81.6 bits (200), Expect = 6.700e-15 Identity = 66/225 (29.33%), Postives = 108/225 (48.00%), Query Frame = 1
Query: 1 TVRATFFFLSPDWNGVYFFVVMDRANQWPL------YVLDQFPSLLFFSLYTVLASSWASVYFTSQDKAHLHNTCARPSVVAVNVVVYLAQVAAWVVYRWKYWSHPNWSLLAAGCHAFAFVCVAXXXXGL--GLRVYRLIHDVPLNVAVRRRKLADLWLSVVLCTACFCVRAGAIVAVAVTFHEDDKFVVGTFSLWDGLAFVGYYALCEMLPASVILYLYRNTPP 651
T + F FL+ NGV V + R + L ++L P L FF+ Y +L WA +Y+ ++ + RP+ +N VVY+AQ+A W++ WK P L+ FA V + L G R++ ++ P+ RR+KL ++ +C +CF VR + ++F+ DK L F+ YY L E+LP+S++L++ R PP
Sbjct: 66 TTQKVFHFLNFLVNGVRSVVFVFRRSVQQLKPEIIQHILLDLPGLAFFTTYALLVLFWAEIYYQARA---VSTDGLRPTFYTINAVVYVAQIALWLLIWWK----PVQPLIILSKIFFAGVSLFAALGFLLYGGRLFLMLRRFPVESKGRRKKLEEVGYVTTICFSCFMVRC-----IMMSFNAFDKAADLDVLNHPILNFL-YYLLVEILPSSLVLFILRKLPP 277
BLAST of mRNA_S-firma_F_contig10981.1294.1 vs. uniprot
Match: TOM3_ARATH (Tobamovirus multiplication protein 3 n=33 Tax=Brassicaceae TaxID=3700 RepID=TOM3_ARATH) HSP 1 Score: 81.3 bits (199), Expect = 1.110e-14 Identity = 67/225 (29.78%), Postives = 106/225 (47.11%), Query Frame = 1
Query: 1 TVRATFFFLSPDWNGVYFFVVMDRANQWPL------YVLDQFPSLLFFSLYTVLASSWASVYFTSQDKAHLHNTCARPSVVAVNVVVYLAQVAAWVVYRWKYWSHPNWSLLAAGCHAFAFVCVAXXXXGL--GLRVYRLIHDVPLNVAVRRRKLADLWLSVVLCTACFCVRAGAIVAVAVTFHEDDKFVVGTFSLWDGLAFVGYYALCEMLPASVILYLYRNTPP 651
T + F FL+ NGV V + R N + ++L PSL FF+ Y +L WA +Y+ ++ + RPS +N VVY+ Q+A W+V WK P ++ FA V + L G R++ ++ P+ RR+KL ++ +C CF +R I+ F E V + L F+ YY L E+LP+S++L++ R PP
Sbjct: 81 TTQKVFHFLNFVVNGVRAVVFVFRRNVQFMQPEILQHILLDIPSLAFFTTYALLVLFWAEIYYQARA---VSTDGLRPSFFTINAVVYVVQIALWLVLWWK----PVRVMVILSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRC--IMMCFAAFDEGANLDVLDHPI---LNFI-YYLLVEILPSSLVLFILRKLPP 292
BLAST of mRNA_S-firma_F_contig10981.1294.1 vs. uniprot
Match: V4T8V5_CITCL (DUF1084 domain-containing protein n=5 Tax=Sapindales TaxID=41937 RepID=V4T8V5_CITCL) HSP 1 Score: 80.5 bits (197), Expect = 1.600e-14 Identity = 65/225 (28.89%), Postives = 106/225 (47.11%), Query Frame = 1
Query: 1 TVRATFFFLSPDWNGVYFFVVMDRANQWPL------YVLDQFPSLLFFSLYTVLASSWASVYFTSQDKAHLHNTCARPSVVAVNVVVYLAQVAAWVVYRWKYWSHPNWSLLAAGCHAFAFVCVAXXXXGLGLRVYRLIHDVPLNVAVRRRKLADLWLSVVLCTACFCVRAGAIVAVAVTFHEDDKFVVGTFSLWDG--LAFVGYYALCEMLPASVILYLYRNTPP 651
T + F FL+ N V V + R + L +++ PSL FF+ Y +L WA +Y+ ++ + RPS VN VVY+ Q+A W+V WK P +L+ A + A G R++ ++ P+ RR+KL ++ +C CF VR + + F+ DK + D L F+ YY L E+LP++++L++ R PP
Sbjct: 58 TTQKVFHFLNFIVNAVRCVVFVFRRDVQKLQPDIVRHIVLDMPSLAFFTTYALLVLFWAEIYYQARA---VSTDGLRPSFFTVNAVVYIVQIALWLVLCWK--PIPVIIILSKMFFAAVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLVRC-----IMMCFNAFDK--AADLDVLDHPVLNFI-YYLLVEILPSTLVLFILRKLPP 269 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10981.1294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10981.1294.1 >prot_S-firma_F_contig10981.1294.1 ID=prot_S-firma_F_contig10981.1294.1|Name=mRNA_S-firma_F_contig10981.1294.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=221bp TVRATFFFLSPDWNGVYFFVVMDRANQWPLYVLDQFPSLLFFSLYTVLASback to top mRNA from alignment at S-firma_F_contig10981:3138..3858- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10981.1294.1 ID=mRNA_S-firma_F_contig10981.1294.1|Name=mRNA_S-firma_F_contig10981.1294.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=721bp|location=Sequence derived from alignment at S-firma_F_contig10981:3138..3858- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10981:3138..3858- >mRNA_S-firma_F_contig10981.1294.1 ID=mRNA_S-firma_F_contig10981.1294.1|Name=mRNA_S-firma_F_contig10981.1294.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1326bp|location=Sequence derived from alignment at S-firma_F_contig10981:3138..3858- (Sphaerotrichia firma ET2_F female)back to top |