mRNA_S-firma_F_contig10981.1293.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10981.1293.1
Unique NamemRNA_S-firma_F_contig10981.1293.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10981.1293.1 vs. uniprot
Match: A0A7S3YNQ5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YNQ5_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 1.270e-32
Identity = 87/180 (48.33%), Postives = 108/180 (60.00%), Query Frame = 1 
Query:    1 QDTHDRGVGKVPESCPSGSEKNGALCYPLCRXXXXXXXXXXXXXXXXXXXXXXXXX----RKDGSIKTIAKKSYGRGAGTVMTXXXXXXXXXXXXXXXXXXXXXXXXXXXWETCPTVDPVTGGAVCCRNGTVCSDKIKDLAGDLPLAIAKAILAGDNPDQIIKDVVNALNALLGFVMPLC 528
            +D++ RGVGK   +CP G +K+GALCYP CR                             R+ G IKT AK SYGRGAG  +T           XXXXXXXXXXXXXXXX  +C   DPV GGA+CCR+   C+ KIK L   +P+A+AKAILAGD+P +I K   +A+NA+LG+VMPLC
Sbjct:   70 KDSYGRGVGKPIHTCPDGLDKSGALCYPKCRTDVTPTYYGVGPVCWQHCKDGYVDEGALCREKGGIKTYAKSSYGRGAGKPLTCADDEDEDAGLXXXXXXXXXXXXXXXXXXSCGGKDPVDGGAICCRDADSCTGKIKALCAGVPIAVAKAILAGDDPSKIAKAAEDAINAVLGYVMPLC 249
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BLAST of mRNA_S-firma_F_contig10981.1293.1 vs. uniprot
Match: A0A7S3YNN9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YNN9_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 1.450e-32
Identity = 87/180 (48.33%), Postives = 108/180 (60.00%), Query Frame = 1 
Query:    1 QDTHDRGVGKVPESCPSGSEKNGALCYPLCRXXXXXXXXXXXXXXXXXXXXXXXXX----RKDGSIKTIAKKSYGRGAGTVMTXXXXXXXXXXXXXXXXXXXXXXXXXXXWETCPTVDPVTGGAVCCRNGTVCSDKIKDLAGDLPLAIAKAILAGDNPDQIIKDVVNALNALLGFVMPLC 528
            +D++ RGVGK   +CP G +K+GALCYP CR                             R+ G IKT AK SYGRGAG  +T           XXXXXXXXXXXXXXXX  +C   DPV GGA+CCR+   C+ KIK L   +P+A+AKAILAGD+P +I K   +A+NA+LG+VMPLC
Sbjct:   76 KDSYGRGVGKPIHTCPDGLDKSGALCYPKCRTDVTPTYYGVGPVCWQHCKDGYVDEGALCREKGGIKTYAKSSYGRGAGKPLTCADDEDEDAGLXXXXXXXXXXXXXXXXXXSCGGKDPVDGGAICCRDADSCTGKIKALCAGVPIAVAKAILAGDDPSKIAKAAEDAINAVLGYVMPLC 255
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BLAST of mRNA_S-firma_F_contig10981.1293.1 vs. uniprot
Match: A0A7S1G8V2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G8V2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.820e-28
Identity = 70/179 (39.11%), Postives = 88/179 (49.16%), Query Frame = 1 
Query:    7 THDRGVGKVPESCPSGS--EKNGALCYPLCRXXXXXXXXXXXXXXXXXXXXXXXXX---RKDGSIKTIAKKSYGRGAGTVMTXXXXXXXXXXXXXXXXXXXXXXXXXXXWETCPTVDPVTGGAVCCRNGTVCSDKIKDLAGDLPLAIAKAILAGDNPDQIIKDVVNALNALLGFVMPLC 528
            TH RGVGK    C +    +K+GALCYP C+                            RKDGSI T AK SYGRGAG  +T                           WE+CP   PV GGA+CC N   C+ KI+ L   LPLA+A+AIL+G N  +I + V+ A+ A+LG+VMPLC
Sbjct:   39 THVRGVGKPISWCNTTQHLQKSGALCYPDCKAATPPFDGVGPVCWQECKPGYVDEGALCRKDGSIITYAKASYGRGAGYPLTCPPDTQEDAALCYPLCPAGYYGVGPVCWESCPADHPVDGGALCCDNKADCTSKIEALCAGLPLAVAEAILSGGNATKIEQAVITAIEAVLGYVMPLC 217
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BLAST of mRNA_S-firma_F_contig10981.1293.1 vs. uniprot
Match: A0A7S1NGS0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NGS0_9EUGL)

HSP 1 Score: 70.5 bits (171), Expect = 1.410e-11
Identity = 39/114 (34.21%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  187 KTIAKKSYGRGAGTVMTXXXXXXXXXXXXXXXXXXXXXXXXXXXWETCPTVDPVTGGAVCCRNGTVCSDKIKDLAGDLPLAIAKAILAGDNPDQIIKDVVNALNALLGFVMPLC 528
            +T  K SYGRG G  ++                           W  CP  +PV GGAVCCR    CS ++ D++  LP A+A+A  AG    ++ + V  AL AL+GF +P+C
Sbjct:  100 ETYNKSSYGRGPGWPLSCPTGTELDGGLCYPPCCPRYDGLGPVCWARCPAQNPVEGGAVCCRTLQDCSQRLLDISVGLPRAVAEATRAGGEILEVERAVKAALEALVGFTLPVC 213
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10981.1293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3YNQ5_9EUKA1.270e-3248.33Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S3YNN9_9EUKA1.450e-3248.33Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S1G8V2_9STRA2.820e-2839.11Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1NGS0_9EUGL1.410e-1134.21Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10981contigS-firma_F_contig10981:772..1522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size528
Cds size528
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10981.1293.1prot_S-firma_F_contig10981.1293.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10981 772..1522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.6849337-CDS-S-firma_F_contig10981:771..8411622815642.6849337-CDS-S-firma_F_contig10981:771..841Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10981 772..841 +
1696949473.858153-CDS-S-firma_F_contig10981:771..8411696949473.858153-CDS-S-firma_F_contig10981:771..841Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10981 772..841 +
1622815642.6985254-CDS-S-firma_F_contig10981:904..9401622815642.6985254-CDS-S-firma_F_contig10981:904..940Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10981 905..940 +
1696949473.8679543-CDS-S-firma_F_contig10981:904..9401696949473.8679543-CDS-S-firma_F_contig10981:904..940Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10981 905..940 +
1622815642.7102098-CDS-S-firma_F_contig10981:994..10991622815642.7102098-CDS-S-firma_F_contig10981:994..1099Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10981 995..1099 +
1696949473.878075-CDS-S-firma_F_contig10981:994..10991696949473.878075-CDS-S-firma_F_contig10981:994..1099Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10981 995..1099 +
1622815642.7200718-CDS-S-firma_F_contig10981:1156..12611622815642.7200718-CDS-S-firma_F_contig10981:1156..1261Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10981 1157..1261 +
1696949473.896144-CDS-S-firma_F_contig10981:1156..12611696949473.896144-CDS-S-firma_F_contig10981:1156..1261Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10981 1157..1261 +
1622815642.7327108-CDS-S-firma_F_contig10981:1310..15221622815642.7327108-CDS-S-firma_F_contig10981:1310..1522Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10981 1311..1522 +
1696949473.9077265-CDS-S-firma_F_contig10981:1310..15221696949473.9077265-CDS-S-firma_F_contig10981:1310..1522Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10981 1311..1522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10981.1293.1

>prot_S-firma_F_contig10981.1293.1 ID=prot_S-firma_F_contig10981.1293.1|Name=mRNA_S-firma_F_contig10981.1293.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=176bp
QDTHDRGVGKVPESCPSGSEKNGALCYPLCRSGYHGVGPVCWEECPSGYV
DEGALCRKDGSIKTIAKKSYGRGAGTVMTCAPGYEEDAALCYPVCPSGFS
GVGPVCWETCPTVDPVTGGAVCCRNGTVCSDKIKDLAGDLPLAIAKAILA
GDNPDQIIKDVVNALNALLGFVMPLC
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mRNA from alignment at S-firma_F_contig10981:772..1522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10981.1293.1 ID=mRNA_S-firma_F_contig10981.1293.1|Name=mRNA_S-firma_F_contig10981.1293.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=751bp|location=Sequence derived from alignment at S-firma_F_contig10981:772..1522+ (Sphaerotrichia firma ET2_F female)
CAGGACACCCATGACCGTGGTGTGGGCAAGGTCCCCGAGTCATGCCCGTC
TGGCTCGGAGAAGAACGGTGGTGCGTGTGTGCGGGTTCCAGTGTTTGACG
GGCCCCTTCACCTCACCCCCCACCCTTCCGCAGCCCTCTGCTACCCGCTC
TGCCGCAGTGGCTACCACGGTTCGTGTTGTCCCTGTGTGTTCCACACCAC
CTTAATCTCACCTTACCCCCAAGGCGTTGGCCCCGTGTGCTGGGAGGAGT
GCCCGTCTGGCTACGTGGACGAAGGTGCCCTCTGCCGTAAGGACGGCAGC
ATCAAGACCATCGCCAAGAAGTCCTACGGTGGGTTTTTGTTTTGCCCTGC
TGTGCTCCATCCAGCACGCCCTAACCAACCCTCAGGCCGCGGCGCTGGTA
CGGTGATGACGTGCGCCCCCGGCTACGAGGAGGACGCCGCCCTGTGCTAC
CCCGTGTGTCCCTCTGGCTTCTCCGGTGTTGGCCCCGTGTGTACGTCAGC
TGTTTCCACCCCCCCTCCACCCCCTAACCCCACCTCCAGGCTGGGAGACG
TGCCCCACCGTGGACCCGGTGACGGGCGGCGCCGTCTGCTGCCGCAACGG
CACCGTCTGCTCCGACAAGATCAAGGACCTCGCCGGCGACTTGCCCCTGG
CCATCGCCAAGGCCATCCTGGCCGGCGACAACCCGGATCAGATCATCAAG
GACGTCGTCAACGCCCTCAACGCCCTCCTTGGCTTCGTCATGCCGCTGTG
C
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Coding sequence (CDS) from alignment at S-firma_F_contig10981:772..1522+

>mRNA_S-firma_F_contig10981.1293.1 ID=mRNA_S-firma_F_contig10981.1293.1|Name=mRNA_S-firma_F_contig10981.1293.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1056bp|location=Sequence derived from alignment at S-firma_F_contig10981:772..1522+ (Sphaerotrichia firma ET2_F female)
CAGGACACCCATGACCGTGGTGTGGGCAAGGTCCCCGAGTCATGCCCGTC
TGGCTCGGAGAAGAACGGTGCAGGACACCCATGACCGTGGTGTGGGCAAG
GTCCCCGAGTCATGCCCGTCTGGCTCGGAGAAGAACGGTGCCCTCTGCTA
CCCGCTCTGCCGCAGTGGCTACCACGCCCTCTGCTACCCGCTCTGCCGCA
GTGGCTACCACGGCGTTGGCCCCGTGTGCTGGGAGGAGTGCCCGTCTGGC
TACGTGGACGAAGGTGCCCTCTGCCGTAAGGACGGCAGCATCAAGACCAT
CGCCAAGAAGTCCTACGGCGTTGGCCCCGTGTGCTGGGAGGAGTGCCCGT
CTGGCTACGTGGACGAAGGTGCCCTCTGCCGTAAGGACGGCAGCATCAAG
ACCATCGCCAAGAAGTCCTACGGCCGCGGCGCTGGTACGGTGATGACGTG
CGCCCCCGGCTACGAGGAGGACGCCGCCCTGTGCTACCCCGTGTGTCCCT
CTGGCTTCTCCGGTGTTGGCCCCGTGTGCCGCGGCGCTGGTACGGTGATG
ACGTGCGCCCCCGGCTACGAGGAGGACGCCGCCCTGTGCTACCCCGTGTG
TCCCTCTGGCTTCTCCGGTGTTGGCCCCGTGTGCTGGGAGACGTGCCCCA
CCGTGGACCCGGTGACGGGCGGCGCCGTCTGCTGCCGCAACGGCACCGTC
TGCTCCGACAAGATCAAGGACCTCGCCGGCGACTTGCCCCTGGCCATCGC
CAAGGCCATCCTGGCCGGCGACAACCCGGATCAGATCATCAAGGACGTCG
TCAACGCCCTCAACGCCCTCCTTGGCTTCGTCATGCCGCTGTGCGCTGGG
AGACGTGCCCCACCGTGGACCCGGTGACGGGCGGCGCCGTCTGCTGCCGC
AACGGCACCGTCTGCTCCGACAAGATCAAGGACCTCGCCGGCGACTTGCC
CCTGGCCATCGCCAAGGCCATCCTGGCCGGCGACAACCCGGATCAGATCA
TCAAGGACGTCGTCAACGCCCTCAACGCCCTCCTTGGCTTCGTCATGCCG
CTGTGC
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