mRNA_S-firma_F_contig10979.1290.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10979.1290.1
Unique NamemRNA_S-firma_F_contig10979.1290.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10979.1290.1 vs. uniprot
Match: R1B4W6_EMIHU (Lipase_3 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B4W6_EMIHU)

HSP 1 Score: 53.1 bits (126), Expect = 6.770e-6
Identity = 32/105 (30.48%), Postives = 53/105 (50.48%), Query Frame = 1 
Query:    1 AALVKYTRDRLGGGRAKSYRFFVTGHSLGGFYAQLVAMQTELPGAAFNTIPL--PDTNKMHGARATYKGSFVCHLRKNDPVNSTPQLFGHYLGAVVMHGAGDVKV 309
            AA+ K+  ++ G  + +  R  VTGHSLGG  A LVAM+ E  G  ++ +    P    + G R          + ++DP+ + P L  H+  A+V++  G + V
Sbjct:  163 AAMWKHVIEKYGPLKERYSRVHVTGHSLGGAIAVLVAMKLEDEGVPYHAVTFAQPKVTDVEGGRQYASLDLTRVIFEDDPIPAMPWLLSHFQHALVVYADGSIGV 267
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10979.1290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R1B4W6_EMIHU6.770e-630.48Lipase_3 domain-containing protein n=1 Tax=Emilian... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10979contigS-firma_F_contig10979:3875..4183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2903.EOD04102
PFAMsLipase_3
Max annot lvl2759|Eukaryota
Evalue1.11e-06
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota
Descriptionphospholipase A1 activity
COG categoryG
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.8286252-CDS-S-firma_F_contig10979:3874..41831622815641.8286252-CDS-S-firma_F_contig10979:3874..4183Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10979 3875..4183 -
1696949473.1585705-CDS-S-firma_F_contig10979:3874..41831696949473.1585705-CDS-S-firma_F_contig10979:3874..4183Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10979 3875..4183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10979.1290.1prot_S-firma_F_contig10979.1290.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10979 3875..4183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10979.1290.1

>prot_S-firma_F_contig10979.1290.1 ID=prot_S-firma_F_contig10979.1290.1|Name=mRNA_S-firma_F_contig10979.1290.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=103bp
AALVKYTRDRLGGGRAKSYRFFVTGHSLGGFYAQLVAMQTELPGAAFNTI
PLPDTNKMHGARATYKGSFVCHLRKNDPVNSTPQLFGHYLGAVVMHGAGD
VKV
back to top

mRNA from alignment at S-firma_F_contig10979:3875..4183-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10979.1290.1 ID=mRNA_S-firma_F_contig10979.1290.1|Name=mRNA_S-firma_F_contig10979.1290.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=309bp|location=Sequence derived from alignment at S-firma_F_contig10979:3875..4183- (Sphaerotrichia firma ET2_F female)
GCCGCTTTGGTAAAGTACACTCGAGACCGGCTCGGTGGTGGCCGTGCTAA
GAGCTACAGGTTCTTCGTCACTGGGCACTCACTCGGTGGCTTTTACGCTC
AACTGGTGGCCATGCAGACCGAGCTGCCAGGAGCAGCCTTTAACACTATC
CCCTTGCCGGACACGAACAAGATGCATGGCGCCAGGGCTACTTACAAGGG
GTCTTTTGTGTGCCATTTGCGCAAGAACGATCCGGTGAACTCAACCCCAC
AGCTTTTCGGACACTACTTGGGGGCAGTTGTCATGCACGGCGCAGGCGAT
GTCAAGGTC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10979:3875..4183-

>mRNA_S-firma_F_contig10979.1290.1 ID=mRNA_S-firma_F_contig10979.1290.1|Name=mRNA_S-firma_F_contig10979.1290.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=618bp|location=Sequence derived from alignment at S-firma_F_contig10979:3875..4183- (Sphaerotrichia firma ET2_F female)
GCCGCTTTGGTAAAGTACACTCGAGACCGGCTCGGTGGTGGCCGTGCTAA
GAGCTACAGGTTCTTCGTCACTGGGCACTCACTCGGTGGCTTTTACGCTC
AACTGGTGGCCATGCAGACCGAGCTGCCAGGAGCAGCCTTTAACACTATC
CCCTTGCCGGACACGAACAAGATGCATGGCGCCAGGGCTACTTACAAGGG
GTCTTTTGTGTGCCATTTGCGCAAGAACGATCCGGTGAACTCAACCCCAC
AGCTTTTCGGACACTACTTGGGGGCAGTTGTCATGCACGGCGCAGGCGAT
GTCAAGGTCGCCGCTTTGGTAAAGTACACTCGAGACCGGCTCGGTGGTGG
CCGTGCTAAGAGCTACAGGTTCTTCGTCACTGGGCACTCACTCGGTGGCT
TTTACGCTCAACTGGTGGCCATGCAGACCGAGCTGCCAGGAGCAGCCTTT
AACACTATCCCCTTGCCGGACACGAACAAGATGCATGGCGCCAGGGCTAC
TTACAAGGGGTCTTTTGTGTGCCATTTGCGCAAGAACGATCCGGTGAACT
CAACCCCACAGCTTTTCGGACACTACTTGGGGGCAGTTGTCATGCACGGC
GCAGGCGATGTCAAGGTC
back to top