mRNA_S-firma_F_contig10977.1288.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10977.1288.1
Unique NamemRNA_S-firma_F_contig10977.1288.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10977.1288.1 vs. uniprot
Match: F0ZH91_DICPU (Uncharacterized protein ABCH2 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZH91_DICPU)

HSP 1 Score: 301 bits (771), Expect = 1.200e-98
Identity = 149/224 (66.52%), Postives = 188/224 (83.93%), Query Frame = 1
Query:    1 EGVPALRGVSLNVMRGEFVCILGKSGGGKTTMLNMMGTIDKPSRGEVFVAGTRITRHTTDRELADLRLNRLGFVFQSFNLLPTMTAMENVQMPMVLAGLLSRSERRSRARMLLSRVGMGHREDHYPSQLSGGEQQRVTIARALANHPEVLLLDEPTGDLDSKNSDIVMKLLTDLNRKERVTLIMVTHDVHLKRFANRVVRMVDGKINRIETVPDHVRAEAFETL 672
            EGVPALRGVS+ + RGEF+CI G SGGGKTTMLN++GTIDKP++GE+ + G  I   T+D++LA LRL  +GFVFQ+FNLL ++TA+ENV+MPM+L G LS SERR RA  LL++VGM  R DH+PSQLSGGEQQRVTIARA+AN+P+VLLLDEPTGDLD+ N+ I+MKLLTDLN+KE +TL+MVTHDV LK +++R++ M DGKI RIETVP+H + E F+ L
Sbjct:   13 EGVPALRGVSMTIKRGEFICIFGTSGGGKTTMLNIIGTIDKPTKGEMKLCGKLINHKTSDKDLAFLRLKNIGFVFQTFNLLSSLTALENVEMPMILLGELSASERRERAISLLTKVGMKDRLDHFPSQLSGGEQQRVTIARAIANNPDVLLLDEPTGDLDTVNTAIIMKLLTDLNKKENITLVMVTHDVGLKMYSDRIIWMRDGKIQRIETVPEHSKKEHFQKL 236          
BLAST of mRNA_S-firma_F_contig10977.1288.1 vs. uniprot
Match: A0A8J4V1S8_9MYCE (ABC transporter domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V1S8_9MYCE)

HSP 1 Score: 294 bits (753), Expect = 2.530e-95
Identity = 145/224 (64.73%), Postives = 186/224 (83.04%), Query Frame = 1
Query:    1 EGVPALRGVSLNVMRGEFVCILGKSGGGKTTMLNMMGTIDKPSRGEVFVAGTRITRHTTDRELADLRLNRLGFVFQSFNLLPTMTAMENVQMPMVLAGLLSRSERRSRARMLLSRVGMGHREDHYPSQLSGGEQQRVTIARALANHPEVLLLDEPTGDLDSKNSDIVMKLLTDLNRKERVTLIMVTHDVHLKRFANRVVRMVDGKINRIETVPDHVRAEAFETL 672
            EGVPALRGVS+++ RGEF+CI G SGGGKTTMLN++GTIDKP++G++ + G  I   TTD++LA LRL  +GFVFQ+FNLL ++TA+ENV+MPM+L G LS SERR RA  LL++VGM  R DH+PSQLSGGEQQRVTIARA+AN+P++LLLDEPTGDLD+ N+ I+MKLLTDLN+ E +TL+MVTHDV LK +++R++ M DGKI RIETVP   + + F+ L
Sbjct:   50 EGVPALRGVSMSIKRGEFICIFGTSGGGKTTMLNIIGTIDKPTKGDMKLCGKMINHKTTDKDLAFLRLKNIGFVFQTFNLLSSLTALENVEMPMILLGELSASERRERAISLLTKVGMKDRLDHFPSQLSGGEQQRVTIARAIANNPDILLLDEPTGDLDTVNTSIIMKLLTDLNKNENITLVMVTHDVGLKMYSDRIIWMRDGKIQRIETVPLKSKEDQFQKL 273          
BLAST of mRNA_S-firma_F_contig10977.1288.1 vs. uniprot
Match: A0A152A2G6_9MYCE (Putative non-transporter ABC protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A2G6_9MYCE)

HSP 1 Score: 295 bits (754), Expect = 6.040e-95
Identity = 148/224 (66.07%), Postives = 185/224 (82.59%), Query Frame = 1
Query:    1 EGVPALRGVSLNVMRGEFVCILGKSGGGKTTMLNMMGTIDKPSRGEVFVAGTRITRHTTDRELADLRLNRLGFVFQSFNLLPTMTAMENVQMPMVLAGLLSRSERRSRARMLLSRVGMGHREDHYPSQLSGGEQQRVTIARALANHPEVLLLDEPTGDLDSKNSDIVMKLLTDLNRKERVTLIMVTHDVHLKRFANRVVRMVDGKINRIETVPDHVRAEAFETL 672
            EGVPALRGV++++ RGEFVCI G SGGGKTTMLN++GTIDKP++G++ + G  I   TTD++LA LRL  +GFVFQ+FNLL ++TA+ENV+MPM+L G LS SERR RA  LL++VGM  R DH+PSQLSGGEQQRVTIARA+AN PEVLLLDEPTGDLD+ N+ I+MKLLTDLN+ E +TL+MVTHDV LK +++R++ M DGKI RIETV    +A+ FE L
Sbjct:   49 EGVPALRGVTMSIKRGEFVCIFGTSGGGKTTMLNIIGTIDKPTKGDMKLCGKMINHKTTDKDLAFLRLKHIGFVFQTFNLLSSLTALENVEMPMILLGELSASERRERAISLLTKVGMKDRLDHFPSQLSGGEQQRVTIARAIANSPEVLLLDEPTGDLDTVNTSIIMKLLTDLNKTENITLVMVTHDVGLKMYSDRIIWMRDGKIQRIETVSKSKQADQFEKL 272          
BLAST of mRNA_S-firma_F_contig10977.1288.1 vs. uniprot
Match: ABCH2_DICDI (ABC transporter H family member 2 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=ABCH2_DICDI)

HSP 1 Score: 294 bits (753), Expect = 1.770e-94
Identity = 146/224 (65.18%), Postives = 186/224 (83.04%), Query Frame = 1
Query:    1 EGVPALRGVSLNVMRGEFVCILGKSGGGKTTMLNMMGTIDKPSRGEVFVAGTRITRHTTDRELADLRLNRLGFVFQSFNLLPTMTAMENVQMPMVLAGLLSRSERRSRARMLLSRVGMGHREDHYPSQLSGGEQQRVTIARALANHPEVLLLDEPTGDLDSKNSDIVMKLLTDLNRKERVTLIMVTHDVHLKRFANRVVRMVDGKINRIETVPDHVRAEAFETL 672
            EGVPALRGVS+ + RGEF+CI G SGGGKTTMLN++GTIDKP++GE+ + G  I   TTD++LA LRL  +GFVFQ+FNLL ++TA+ENV+MPM+L G LS SERR RA  LL++VGM  R DH+PSQLSGGEQQRVTIARA+AN+P+VLLLDEPTGDLD+ N+ ++MKLLTDLN++E +TLIMVTHDV LK +++R++ M DGKI RIETV +  + E ++ L
Sbjct:   53 EGVPALRGVSMAIKRGEFICIFGTSGGGKTTMLNIIGTIDKPTKGEMKLCGKTINHKTTDKDLAFLRLRNIGFVFQTFNLLSSLTALENVEMPMILLGELSASERRERAISLLTKVGMKDRLDHFPSQLSGGEQQRVTIARAIANNPDVLLLDEPTGDLDTVNTSVIMKLLTDLNKQENITLIMVTHDVGLKMYSDRIIWMRDGKIQRIETVQEQSKREHYQKL 276          
BLAST of mRNA_S-firma_F_contig10977.1288.1 vs. uniprot
Match: J9HMS6_9SPIT (Non-transporter ABC protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HMS6_9SPIT)

HSP 1 Score: 289 bits (739), Expect = 1.870e-93
Identity = 142/225 (63.11%), Postives = 185/225 (82.22%), Query Frame = 1
Query:    1 EGVPALRGVSLNVMRGEFVCILGKSGGGKTTMLNMMGTIDKPSRGEVFVAGTRITRHTTDRELADLRLNRLGFVFQSFNLLPTMTAMENVQMPMVLAGLLSRSERRSRARMLLSRVGMGHREDHYPSQLSGGEQQRVTIARALANHPEVLLLDEPTGDLDSKNSDIVMKLLTDLNRKERVTLIMVTHDVHLKRFANRVVRMVDGKINRIETVPDHVRAEAFETLN 675
            EGVPALRGV+L +  GEF+ ILG SGGGKTT+LN++GTIDKPS+G+V++ G RI   T D+ LA +RLN+LGFVFQ+FNL+ ++TA+ENV++PM L G LSR + R RA  LL  V +G R DH+P+QLSGGEQQRVTIARA+AN+P ++LLDEPTGDLD++++DIVMK+L DLN K+++T+IMVTHDV LK FANRVVRM DGK+N+IE +   +R+EA   L+
Sbjct:  124 EGVPALRGVNLTINDGEFITILGTSGGGKTTLLNIIGTIDKPSKGDVYICGLRIKYSTKDQLLASIRLNKLGFVFQTFNLIGSLTALENVELPMQLRGKLSREQIRKRAVSLLEEVSLGSRMDHFPNQLSGGEQQRVTIARAIANNPSIILLDEPTGDLDTRSTDIVMKILLDLNVKKKITMIMVTHDVGLKAFANRVVRMADGKVNKIEEIDPSIRSEAVRHLD 348          
BLAST of mRNA_S-firma_F_contig10977.1288.1 vs. uniprot
Match: UPI0006449C52 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449C52)

HSP 1 Score: 290 bits (742), Expect = 1.890e-93
Identity = 146/225 (64.89%), Postives = 184/225 (81.78%), Query Frame = 1
Query:    1 EGVPALRGVSLNVMRGEFVCILGKSGGGKTTMLNMMGTIDKPSRGEVFVAGTRITRHTTDRELADLRLNRLGFVFQSFNLLPTMTAMENVQMPMVLAGLLSRSERRSRARMLLSRVGMGHREDHYPSQLSGGEQQRVTIARALANHPEVLLLDEPTGDLDSKNSDIVMKLLTDLNRKERVTLIMVTHDVHLKRFANRVVRMVDGKINRIETVPDHVRAEAFETLN 675
            EGVPALRGV++ + RGEFVCI G SGGGKTTMLN++GTIDKP++G++ + G  I   TTD++LA +RL  +GFVFQ+FNLL ++TA+ENV+MPM+L G LS  ERR RA  LL++VGM  R DH PSQLSGGEQQRVTIARA+AN+P++LLLDEPTGDLD+ N+ IVMKLLTDLNR E +TL+MVTHDV LK +A+RV+ M DGKI RIETV   ++ ++F  L+
Sbjct:   48 EGVPALRGVTMTIKRGEFVCIFGTSGGGKTTMLNLIGTIDKPTKGDMRLCGKVINHKTTDKDLAYIRLKNIGFVFQTFNLLSSLTALENVEMPMILLGELSAQERRERAISLLTKVGMKDRLDHVPSQLSGGEQQRVTIARAMANNPDILLLDEPTGDLDTVNTSIVMKLLTDLNRDENITLVMVTHDVGLKAYADRVIWMRDGKIQRIETVSLDLKKDSFSRLH 272          
BLAST of mRNA_S-firma_F_contig10977.1288.1 vs. uniprot
Match: D3B0C5_POLPP (Putative non-transporter ABC protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B0C5_POLPP)

HSP 1 Score: 289 bits (740), Expect = 4.020e-93
Identity = 143/225 (63.56%), Postives = 183/225 (81.33%), Query Frame = 1
Query:    1 EGVPALRGVSLNVMRGEFVCILGKSGGGKTTMLNMMGTIDKPSRGEVFVAGTRITRHTTDRELADLRLNRLGFVFQSFNLLPTMTAMENVQMPMVLAGLLSRSERRSRARMLLSRVGMGHREDHYPSQLSGGEQQRVTIARALANHPEVLLLDEPTGDLDSKNSDIVMKLLTDLNRKERVTLIMVTHDVHLKRFANRVVRMVDGKINRIETVPDHVRAEAFETLN 675
            EGVPALRGV++N+ RGEFVCI G SGGGKTTMLN++GTIDKP++G++ + G  I   TTD++LA +RL  +GFVFQ+FNLL ++TA+ENV+MPM+L G LS +ERR RA  LL++VGM  R DH PSQLSGGEQQRVTIARA+AN+P++LLLDEPTGDLD+ N+ +VMKLLTDLN+ E +TL+MVTHDV LK +A+R++ M DGKI R E+V    R E +  L+
Sbjct:   50 EGVPALRGVTMNIKRGEFVCIFGTSGGGKTTMLNLIGTIDKPTKGDMKLCGKMINHKTTDKDLAYIRLKNIGFVFQTFNLLSSLTALENVEMPMILLGELSATERRERAISLLTKVGMKDRLDHIPSQLSGGEQQRVTIARAMANNPDILLLDEPTGDLDTVNTSVVMKLLTDLNKNENITLVMVTHDVGLKMYADRIIWMRDGKIQRFESVQTDARREHYARLD 274          
BLAST of mRNA_S-firma_F_contig10977.1288.1 vs. uniprot
Match: A0A7S3LRT4_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LRT4_9EUKA)

HSP 1 Score: 285 bits (730), Expect = 6.270e-93
Identity = 140/224 (62.50%), Postives = 187/224 (83.48%), Query Frame = 1
Query:    1 EGVPALRGVSLNVMRGEFVCILGKSGGGKTTMLNMMGTIDKPSRGEVFVAGTRITRHTTDRELADLRLNRLGFVFQSFNLLPTMTAMENVQMPMVLAGLLSRSERRSRARMLLSRVGMGHREDHYPSQLSGGEQQRVTIARALANHPEVLLLDEPTGDLDSKNSDIVMKLLTDLNRKERVTLIMVTHDVHLKRFANRVVRMVDGKINRIETVPDHVRAEAFETL 672
            EGVPALRGV+L++ RG+FV +LG+SGGGKT++LN++GTIDKP++GE+ + GTR+T  T+D+ LA +RL +LGFVFQ+FNLL +MTA+ENV+MPM+L   LS +ERR+RA+ LL++VG+ HR  H PSQLSGGEQQRVTIAR++AN PE+LLLDEPTGDLD+ N++IVM +L +LN + ++T+IMVTHDV+LK FAN+VV M DGKI RIE + +  R +A   L
Sbjct:   64 EGVPALRGVTLDIKRGDFVVLLGQSGGGKTSLLNIIGTIDKPTKGEIVICGTRVTSRTSDKTLAYIRLAKLGFVFQTFNLLSSMTALENVEMPMILKASLSPAERRARAKKLLTKVGLQHRWGHVPSQLSGGEQQRVTIARSIANEPEMLLLDEPTGDLDTANTEIVMNMLVELNMQNKITMIMVTHDVNLKYFANKVVHMRDGKIARIEYIEEERRKQAVAEL 287          
BLAST of mRNA_S-firma_F_contig10977.1288.1 vs. uniprot
Match: F4Q889_CAVFA (Putative non-transporter ABC protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q889_CAVFA)

HSP 1 Score: 288 bits (737), Expect = 2.590e-92
Identity = 147/224 (65.62%), Postives = 183/224 (81.70%), Query Frame = 1
Query:    1 EGVPALRGVSLNVMRGEFVCILGKSGGGKTTMLNMMGTIDKPSRGEVFVAGTRITRHTTDRELADLRLNRLGFVFQSFNLLPTMTAMENVQMPMVLAGLLSRSERRSRARMLLSRVGMGHREDHYPSQLSGGEQQRVTIARALANHPEVLLLDEPTGDLDSKNSDIVMKLLTDLNRKERVTLIMVTHDVHLKRFANRVVRMVDGKINRIETVPDHVRAEAFETL 672
            EGVPALRGVS+ + RG+FVCI G SGGGKTTMLN++GTIDKP++G++ + G  I   TTD++LA LRL  +GFVFQ+FNLL ++TA+ENV+MPM+L G L+ +ERR RA  LL++VGM  R DH PSQLSGGEQQRVTIARA+AN+P++LLLDEPTGDLD+ N+ IVMKLLTDLNR + VTL+MVTHDV LK +++RV+ M DGKI RIETV    + E FE L
Sbjct:   50 EGVPALRGVSMCIKRGDFVCIFGTSGGGKTTMLNIIGTIDKPTKGDMKLCGKTINHKTTDKDLAFLRLKNIGFVFQTFNLLSSLTALENVEMPMILLGELNAAERRERAISLLTKVGMKDRVDHVPSQLSGGEQQRVTIARAMANNPDILLLDEPTGDLDTVNTSIVMKLLTDLNRNDGVTLVMVTHDVGLKMYSDRVIWMRDGKIQRIETVNPLSKKEQFEKL 273          
BLAST of mRNA_S-firma_F_contig10977.1288.1 vs. uniprot
Match: A0A8J8NZS6_HALGN (ABC transporter domain-containing protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NZS6_HALGN)

HSP 1 Score: 284 bits (726), Expect = 4.550e-92
Identity = 140/225 (62.22%), Postives = 185/225 (82.22%), Query Frame = 1
Query:    1 EGVPALRGVSLNVMRGEFVCILGKSGGGKTTMLNMMGTIDKPSRGEVFVAGTRITRHTTDRELADLRLNRLGFVFQSFNLLPTMTAMENVQMPMVLAGLLSRSERRSRARMLLSRVGMGHREDHYPSQLSGGEQQRVTIARALANHPEVLLLDEPTGDLDSKNSDIVMKLLTDLNRKERVTLIMVTHDVHLKRFANRVVRMVDGKINRIETVPDHVRAEAFETLN 675
            EGVPALRGV+L++  GEF+ ILG SGGGKTTMLN++GTIDKPS+G+V++ G RI   T D+ LA +RLN+LGFVFQ+FNL+ ++TA+ENV++PM L G LSR + R RA  LL  VG+G R DH+P+QLSGGEQQRVTIARA++N+P +LLLDEPTGDLD++++DIVMK+L DL +++++T+IMVTHDV LK FANRVVRM DGKI +IE +   +R +  + L+
Sbjct:   82 EGVPALRGVNLSIKAGEFITILGTSGGGKTTMLNIIGTIDKPSKGDVYICGLRIKYSTKDQLLASIRLNKLGFVFQTFNLIGSLTALENVELPMQLRGKLSRDQVRKRAVALLEEVGLGSRLDHFPNQLSGGEQQRVTIARAISNNPSILLLDEPTGDLDTRSTDIVMKILVDLCQQKKITMIMVTHDVSLKSFANRVVRMADGKIAKIEEIDPSIRDDMIKHLS 306          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10977.1288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0ZH91_DICPU1.200e-9866.52Uncharacterized protein ABCH2 n=1 Tax=Dictyosteliu... [more]
A0A8J4V1S8_9MYCE2.530e-9564.73ABC transporter domain-containing protein n=1 Tax=... [more]
A0A152A2G6_9MYCE6.040e-9566.07Putative non-transporter ABC protein n=1 Tax=Tiegh... [more]
ABCH2_DICDI1.770e-9465.18ABC transporter H family member 2 n=1 Tax=Dictyost... [more]
J9HMS6_9SPIT1.870e-9363.11Non-transporter ABC protein n=1 Tax=Oxytricha trif... [more]
UPI0006449C521.890e-9364.89hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3B0C5_POLPP4.020e-9363.56Putative non-transporter ABC protein n=1 Tax=Polys... [more]
A0A7S3LRT4_9EUKA6.270e-9362.50Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
F4Q889_CAVFA2.590e-9265.63Putative non-transporter ABC protein n=1 Tax=Caven... [more]
A0A8J8NZS6_HALGN4.550e-9262.22ABC transporter domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10977contigS-firma_F_contig10977:2606..3458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog5786.XP_003286797.1
PFAMsABC_tran
Max annot lvl554915|Amoebozoa
KEGG koko:K02003
KEGG TC3.A.1
KEGG ModuleM00258
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008144,GO:0008150,GO:0009653,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030554,GO:0030587,GO:0031224,GO:0031288,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071944,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098796,GO:0098797,GO:0099120,GO:1901265,GO:1901363,GO:1902494,GO:1902495,GO:1904949,GO:1990351
Evalue1.97e-99
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota,3X85I@554915|Amoebozoa
DescriptionABC transporter
COG categoryQ
BRITEko00000,ko00002,ko02000
Hectar predicted targeting categoryother localisation
Exons4
Model size675
Cds size675
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10977.1288.1prot_S-firma_F_contig10977.1288.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10977 2606..3458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.744712-CDS-S-firma_F_contig10977:2605..30271622815641.744712-CDS-S-firma_F_contig10977:2605..3027Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10977 2606..3027 +
1696949473.0840354-CDS-S-firma_F_contig10977:2605..30271696949473.0840354-CDS-S-firma_F_contig10977:2605..3027Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10977 2606..3027 +
1622815641.759351-CDS-S-firma_F_contig10977:3084..31881622815641.759351-CDS-S-firma_F_contig10977:3084..3188Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10977 3085..3188 +
1696949473.1265244-CDS-S-firma_F_contig10977:3084..31881696949473.1265244-CDS-S-firma_F_contig10977:3084..3188Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10977 3085..3188 +
1622815641.7717967-CDS-S-firma_F_contig10977:3256..33451622815641.7717967-CDS-S-firma_F_contig10977:3256..3345Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10977 3257..3345 +
1696949473.1405804-CDS-S-firma_F_contig10977:3256..33451696949473.1405804-CDS-S-firma_F_contig10977:3256..3345Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10977 3257..3345 +
1622815641.7839317-CDS-S-firma_F_contig10977:3398..34581622815641.7839317-CDS-S-firma_F_contig10977:3398..3458Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10977 3399..3458 +
1696949473.149504-CDS-S-firma_F_contig10977:3398..34581696949473.149504-CDS-S-firma_F_contig10977:3398..3458Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10977 3399..3458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10977.1288.1

>prot_S-firma_F_contig10977.1288.1 ID=prot_S-firma_F_contig10977.1288.1|Name=mRNA_S-firma_F_contig10977.1288.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=225bp
EGVPALRGVSLNVMRGEFVCILGKSGGGKTTMLNMMGTIDKPSRGEVFVA
GTRITRHTTDRELADLRLNRLGFVFQSFNLLPTMTAMENVQMPMVLAGLL
SRSERRSRARMLLSRVGMGHREDHYPSQLSGGEQQRVTIARALANHPEVL
LLDEPTGDLDSKNSDIVMKLLTDLNRKERVTLIMVTHDVHLKRFANRVVR
MVDGKINRIETVPDHVRAEAFETLN
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mRNA from alignment at S-firma_F_contig10977:2606..3458+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10977.1288.1 ID=mRNA_S-firma_F_contig10977.1288.1|Name=mRNA_S-firma_F_contig10977.1288.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=853bp|location=Sequence derived from alignment at S-firma_F_contig10977:2606..3458+ (Sphaerotrichia firma ET2_F female)
GAGGGCGTTCCGGCGCTGCGTGGCGTGTCGCTGAACGTTATGCGGGGGGA GTTTGTGTGCATCCTTGGCAAGAGTGGCGGCGGCAAGACTACCATGCTGA ACATGATGGGCACCATTGACAAGCCGTCCCGTGGGGAGGTGTTTGTCGCT GGGACGCGCATTACCCGCCACACCACTGACCGTGAGCTTGCTGACCTGAG GCTGAACCGCCTGGGGTTTGTATTCCAGTCCTTCAACCTGCTCCCCACCA TGACCGCCATGGAGAACGTCCAGATGCCCATGGTGTTGGCTGGCCTGCTG TCCCGCTCTGAGCGCCGGTCCCGGGCCCGTATGCTGCTGTCACGGGTGGG AATGGGCCACCGTGAGGACCACTATCCGTCTCAGCTCAGTGGCGGCGAAC AGCAGCGCGTCACCATTGCCAGGTGTGTGCCGCCCCCACCCTCCCTGCAC ACCTTTCGTGACCCACGTGTATTTTGCAGGGCACTGGCGAACCACCCTGA GGTCCTCCTGTTGGATGAGCCCACCGGAGACTTGGACTCCAAAAACTCAG ACATTGTCATGAAGCTGCTGACGGACTTGAACCGTGCGTTTGCCCCCCCC CCCCCCCTTTCCCTAAACACTGCTGTTATCACGTCACGCGTCACGCCACA GGCAAGGAGCGTGTGACCCTCATCATGGTCACCCACGACGTGCACCTGAA GCGGTTTGCGAACCGTGTGGTGCGCATGGTGGACGGCAAGGTGTTGCCCC CCCCCCCCCCTTTCCTCCCCGCGTTCTCAATTCTGGCACACAGATCAACC GCATTGAGACGGTTCCCGACCACGTCCGAGCTGAGGCGTTTGAGACGCTG AAT
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Coding sequence (CDS) from alignment at S-firma_F_contig10977:2606..3458+

>mRNA_S-firma_F_contig10977.1288.1 ID=mRNA_S-firma_F_contig10977.1288.1|Name=mRNA_S-firma_F_contig10977.1288.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1350bp|location=Sequence derived from alignment at S-firma_F_contig10977:2606..3458+ (Sphaerotrichia firma ET2_F female)
GAGGGCGTTCCGGCGCTGCGTGGCGTGTCGCTGAACGTTATGCGGGGGGA
GTTTGTGTGCATCCTTGGCAAGAGTGGCGGCGGCAAGACTACCATGCTGA
ACATGATGGGCACCATTGACAAGCCGTCCCGTGGGGAGGTGTTTGTCGCT
GGGACGCGCATTACCCGCCACACCACTGACCGTGAGCTTGCTGACCTGAG
GCTGAACCGCCTGGGGTTTGTATTCCAGTCCTTCAACCTGCTCCCCACCA
TGACCGCCATGGAGAACGTCCAGATGCCCATGGTGTTGGCTGGCCTGCTG
TCCCGCTCTGAGCGCCGGTCCCGGGCCCGTATGCTGCTGTCACGGGTGGG
AATGGGCCACCGTGAGGACCACTATCCGTCTCAGCTCAGTGGCGGCGAAC
AGCAGCGCGTCACCATTGCCAGGAGGGCGTTCCGGCGCTGCGTGGCGTGT
CGCTGAACGTTATGCGGGGGGAGTTTGTGTGCATCCTTGGCAAGAGTGGC
GGCGGCAAGACTACCATGCTGAACATGATGGGCACCATTGACAAGCCGTC
CCGTGGGGAGGTGTTTGTCGCTGGGACGCGCATTACCCGCCACACCACTG
ACCGTGAGCTTGCTGACCTGAGGCTGAACCGCCTGGGGTTTGTATTCCAG
TCCTTCAACCTGCTCCCCACCATGACCGCCATGGAGAACGTCCAGATGCC
CATGGTGTTGGCTGGCCTGCTGTCCCGCTCTGAGCGCCGGTCCCGGGCCC
GTATGCTGCTGTCACGGGTGGGAATGGGCCACCGTGAGGACCACTATCCG
TCTCAGCTCAGTGGCGGCGAACAGCAGCGCGTCACCATTGCCAGGGCACT
GGCGAACCACCCTGAGGTCCTCCTGTTGGATGAGCCCACCGGAGACTTGG
ACTCCAAAAACTCAGACATTGTCATGAAGCTGCTGACGGACTTGAACCGG
CACTGGCGAACCACCCTGAGGTCCTCCTGTTGGATGAGCCCACCGGAGAC
TTGGACTCCAAAAACTCAGACATTGTCATGAAGCTGCTGACGGACTTGAA
CCGCAAGGAGCGTGTGACCCTCATCATGGTCACCCACGACGTGCACCTGA
AGCGGTTTGCGAACCGTGTGGTGCGCATGGTGGACGGCAAGGCAAGGAGC
GTGTGACCCTCATCATGGTCACCCACGACGTGCACCTGAAGCGGTTTGCG
AACCGTGTGGTGCGCATGGTGGACGGCAAGATCAACCGCATTGAGACGGT
TCCCGACCACGTCCGAGCTGAGGCGTTTGAGACGCTGAATATCAACCGCA
TTGAGACGGTTCCCGACCACGTCCGAGCTGAGGCGTTTGAGACGCTGAAT
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