mRNA_S-firma_F_contig10973.1287.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10973.1287.1
Unique NamemRNA_S-firma_F_contig10973.1287.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10973.1287.1 vs. uniprot
Match: D7FPW3_ECTSI (2-hydroxy-3-oxopropionate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPW3_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 5.380e-38
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 3
Query:   45 MAETIGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSAVATPKEVVEACELTYLMLSDLEASK 269
            MAET+GFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSA A+PKEVVE+CELTYLMLSDLEASK
Sbjct:    1 MAETVGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSAAASPKEVVESCELTYLMLSDLEASK 75          
BLAST of mRNA_S-firma_F_contig10973.1287.1 vs. uniprot
Match: D7FQJ3_ECTSI (Gamma hydroxybutyrate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ3_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 9.390e-16
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 3
Query:   51 ETIGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSAVATPKEVVEACELTYLMLSDLEAS 266
            E +GFIGLGIMG GMASNL K G  V+VWNR+  K + F ++  GC   ATPKEVVE C +TY MLS  EA+
Sbjct:   52 EKVGFIGLGIMGTGMASNLIKGGRDVIVWNRTASKAADF-SKRTGCETAATPKEVVEQCSITYSMLSTPEAA 122          
BLAST of mRNA_S-firma_F_contig10973.1287.1 vs. uniprot
Match: A0A7S2XW24_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW24_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.950e-15
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 3
Query:   57 IGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSAVATPKEVVEACELTYLMLSDLEASK 269
            +GF+G+GIMG+GMA NL KAG  ++VWNR   K  +F AE  G +   TPKEVVE+C LTY MLS LEA +
Sbjct:    7 VGFVGIGIMGRGMALNLTKAGRTLIVWNRDTTKAESFAAEF-GATVAKTPKEVVESCTLTYCMLSTLEADR 76          
BLAST of mRNA_S-firma_F_contig10973.1287.1 vs. uniprot
Match: A0A6V1X3J8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1X3J8_HETAK)

HSP 1 Score: 81.3 bits (199), Expect = 3.660e-15
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   45 MAETIGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSAVATPKEVVEACELTYLMLSDLEAS 266
            M+  IGFIGLGIMG GMA NL KAG  +VVWNR   K  AFV E  G  A  + KEV+E CE+TY MLS LEAS
Sbjct:    1 MSGEIGFIGLGIMGLGMAKNLVKAGRSLVVWNRDVSKSEAFVLEFGGQIA-GSAKEVIERCEITYSMLSTLEAS 73          
BLAST of mRNA_S-firma_F_contig10973.1287.1 vs. uniprot
Match: R1FFW2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FFW2_EMIHU)

HSP 1 Score: 80.1 bits (196), Expect = 1.030e-14
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 3
Query:   45 MAETIGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGC-SAVATPKEVVEACELTYLMLSDLEASK*DREKRAG 293
            M +++GFIGLGIMG+GMA  L K+G K+VVWNRS GK +A  A+H G  +AV +P  V+ AC+L Y MLS  +A K   E   G
Sbjct:    1 MTDSVGFIGLGIMGEGMAKCLLKSGRKLVVWNRSAGKCAALSADHPGAVTAVDSPSAVLAACDLVYCMLSTPDAVKAVYEMEGG 84          
BLAST of mRNA_S-firma_F_contig10973.1287.1 vs. uniprot
Match: A0A7S4NXR3_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NXR3_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 1.430e-14
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 3
Query:   57 IGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSAVATPKEVVEACELTYLMLSDLEASK 269
            +GFIGLGIMG GMA+NL K+G K+VVWNRS  K   F A++ G  +VATPK VVEAC++TY  L+  E ++
Sbjct:    8 VGFIGLGIMGVGMANNLLKSGRKLVVWNRSTAKAEDFAAKY-GAESVATPKAVVEACDVTYSCLTTPEVAR 77          
BLAST of mRNA_S-firma_F_contig10973.1287.1 vs. uniprot
Match: R1DDQ3_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DDQ3_EMIHU)

HSP 1 Score: 73.9 bits (180), Expect = 2.100e-12
Identity = 45/95 (47.37%), Postives = 54/95 (56.84%), Query Frame = 3
Query:   48 AETIGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSAVA-TPKEVVEACELTYLMLSDLEASK*DREKRAGTADRFENSTAGI 329
            AE +GFIGLGIMGQGMA  LA +G  + VW R     SA  +EH G   VA +P  VVEAC  TYLMLS  +A +     R G  +   +  A I
Sbjct:   13 AEPVGFIGLGIMGQGMARRLASSGQPLHVWTRGATAASALASEHPGAVTVAESPAAVVEACSRTYLMLSTPDACEEVYSMRGGVLEGVSDGKALI 107          
BLAST of mRNA_S-firma_F_contig10973.1287.1 vs. uniprot
Match: A0A8J2SA39_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SA39_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.650e-11
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 3
Query:   60 GFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGC-SAVATPKEVVEACELTYLMLSDLEASK 269
            GFIG+GIMG+GMA  L KAG  +VVWNR   K     A H G  + V++  EV++AC +TY MLS LEAS+
Sbjct:    4 GFIGIGIMGEGMAGCLLKAGKALVVWNRDASKAQKLAAAHPGLVTVVSSAGEVIDACAVTYSMLSTLEASE 74          
BLAST of mRNA_S-firma_F_contig10973.1287.1 vs. uniprot
Match: A0A4W5MGV5_9TELE (NAD_binding_2 domain-containing protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5MGV5_9TELE)

HSP 1 Score: 67.4 bits (163), Expect = 2.110e-11
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3
Query:   30 NTNNTMAETIGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSAVATPKEVVEACELTYLMLSDLEASK*DREKRAGT 296
            N N +    IGF+GLG+MG G+ SNL K G  V VWNR+  K   F+   EG     TP EVV  C++T+  +SD +A++    K  GT
Sbjct:    4 NVNLSFFYRIGFLGLGLMGSGIVSNLLKMGHVVTVWNRTVEKCDLFI--QEGARLGRTPAEVVSMCDITFSCVSDPKAARDVSTKETGT 90          
BLAST of mRNA_S-firma_F_contig10973.1287.1 vs. uniprot
Match: UPI001BDA7B1C (NAD(P)-dependent oxidoreductase n=2 Tax=Geobacter TaxID=28231 RepID=UPI001BDA7B1C)

HSP 1 Score: 70.9 bits (172), Expect = 2.260e-11
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   51 ETIGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSAVATPKEVVEACELTYLMLSD 254
            +T GFIGLGIMG  MA NL KAG  V VWNRS  K      E  G +  ATP++VVEAC +T+ ML+D
Sbjct:    2 QTFGFIGLGIMGSAMAKNLIKAGFTVTVWNRSADKCREL--EALGATVAATPRQVVEACPVTFAMLAD 67          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10973.1287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPW3_ECTSI5.380e-3894.672-hydroxy-3-oxopropionate reductase n=2 Tax=Ectoca... [more]
D7FQJ3_ECTSI9.390e-1659.72Gamma hydroxybutyrate dehydrogenase n=2 Tax=Ectoca... [more]
A0A7S2XW24_9STRA1.950e-1557.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1X3J8_HETAK3.660e-1562.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
R1FFW2_EMIHU1.030e-1452.38Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S4NXR3_9EUKA1.430e-1457.75Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
R1DDQ3_EMIHU2.100e-1247.37Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A8J2SA39_9STRA1.650e-1153.52Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4W5MGV5_9TELE2.110e-1142.70NAD_binding_2 domain-containing protein n=1 Tax=Hu... [more]
UPI001BDA7B1C2.260e-1155.88NAD(P)-dependent oxidoreductase n=2 Tax=Geobacter ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10973contigS-firma_F_contig10973:3662..4655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FPW3
PFAMsNAD_binding_11,NAD_binding_2
Max annot lvl2759|Eukaryota
Evalue5.19e-41
EggNOG OGsCOG2084@1|root,KOG0409@2759|Eukaryota
Description3hydroxyisobutyrate dehydrogenase
COG categoryI
Hectar predicted targeting categoryother localisation
Ec32 ortholog description6-phosphogluconate dehydrogenase, NADP-binding
Ec32 orthologEc-01_008450.1
Exons2
Model size553
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10973.1287.1prot_S-firma_F_contig10973.1287.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10973 3706..4374 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.6660857-UTR-S-firma_F_contig10973:3661..37051622815641.6660857-UTR-S-firma_F_contig10973:3661..3705Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10973 3662..3705 +
1696949473.0465357-UTR-S-firma_F_contig10973:3661..37051696949473.0465357-UTR-S-firma_F_contig10973:3661..3705Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10973 3662..3705 +
1622815641.7059817-UTR-S-firma_F_contig10973:4374..46551622815641.7059817-UTR-S-firma_F_contig10973:4374..4655Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10973 4375..4655 +
1696949473.0750823-UTR-S-firma_F_contig10973:4374..46551696949473.0750823-UTR-S-firma_F_contig10973:4374..4655Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10973 4375..4655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.6803296-CDS-S-firma_F_contig10973:3705..37361622815641.6803296-CDS-S-firma_F_contig10973:3705..3736Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10973 3706..3736 +
1696949473.0583615-CDS-S-firma_F_contig10973:3705..37361696949473.0583615-CDS-S-firma_F_contig10973:3705..3736Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10973 3706..3736 +
1622815641.6935382-CDS-S-firma_F_contig10973:4177..43741622815641.6935382-CDS-S-firma_F_contig10973:4177..4374Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10973 4178..4374 +
1696949473.0669096-CDS-S-firma_F_contig10973:4177..43741696949473.0669096-CDS-S-firma_F_contig10973:4177..4374Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10973 4178..4374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10973.1287.1

>prot_S-firma_F_contig10973.1287.1 ID=prot_S-firma_F_contig10973.1287.1|Name=mRNA_S-firma_F_contig10973.1287.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=76bp
MAETIGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSA
VATPKEVVEACELTYLMLSDLEASK*
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mRNA from alignment at S-firma_F_contig10973:3662..4655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10973.1287.1 ID=mRNA_S-firma_F_contig10973.1287.1|Name=mRNA_S-firma_F_contig10973.1287.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=994bp|location=Sequence derived from alignment at S-firma_F_contig10973:3662..4655+ (Sphaerotrichia firma ET2_F female)
CAGCAGACAGCTTTCGAGTGGACAGCACGAACACCAACAACACTATGGCG GAGACTATCGGATTCATCGGACTGGGTGGGTTTACTGTTGCGAAATTCAA TCAGAGACTCTCGAATCTTGTTCATTTTTCTTTTCCAACAACATGCGAAA GATGGCCTCACACCCTCGTCACACGGAGTAAGCAAGGGGCGGGTGTGTCC ACCCCACGCGAGAACGGCAAGATACACGCCTCTGGCCTCTGCTCTGCTGT CGTTAGTGTAGACTGCAGCCTTCATTTCAGAGTAGTGGCTGCACACCTGG TTGGGTTTCCCCACTTCTGCCATGCGCAACGCAGCATGAATACGCGCGCA CTGCGTTTGTGCAGGTATATGTGTACAGCAAAGTAGTACTGCTCTACCCT GAACCCGTAGCTTAGATCCATAGCTGATCTCTGCTGATGATCTGCCTTCA CTTCACGGCGAAAGACTCTCCAACAACGTCATGACGCCAACACCGCCGCC GCAACCTCTGTCGCAGGTATTATGGGCCAAGGAATGGCGTCCAACCTCGC CAAGGCAGGCGCTAAGGTTGTCGTCTGGAATCGCAGCGAGGGCAAACGGT CGGCCTTCGTCGCAGAGCATGAGGGTTGCTCCGCCGTGGCGACCCCCAAG GAGGTGGTGGAGGCCTGCGAGCTGACGTACCTTATGCTCTCCGACCTGGA GGCATCCAAGTGAGACAGAGAGAAGAGAGCAGGGACAGCTGACAGATTTG AAAACAGCACAGCAGGAATTTACCAGAGAGTTGGGGCTTCCCACGTCCCA AGAGAAGGAGAGGAACGGCAGGCTTTGGCGGGTGAAAAAACGGGATGATG AGAGAAAACCTCCCGCCTTTCGCCCCGCCTCTCTCCCGCCGAGGTTTTAC CGCGACTTGCTATTCAAACCGTCAAGTGAAGGAGGCACAGCCACCGGGAG TGAAACCGCTCAAAAAATTGTTTCAAGTAACACCCATGTTTATA
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Coding sequence (CDS) from alignment at S-firma_F_contig10973:3662..4655+

>mRNA_S-firma_F_contig10973.1287.1 ID=mRNA_S-firma_F_contig10973.1287.1|Name=mRNA_S-firma_F_contig10973.1287.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=456bp|location=Sequence derived from alignment at S-firma_F_contig10973:3662..4655+ (Sphaerotrichia firma ET2_F female)
ATGGCGGAGACTATCGGATTCATCGGACTGGATGGCGGAGACTATCGGAT
TCATCGGACTGGGTATTATGGGCCAAGGAATGGCGTCCAACCTCGCCAAG
GCAGGCGCTAAGGTTGTCGTCTGGAATCGCAGCGAGGGCAAACGGTCGGC
CTTCGTCGCAGAGCATGAGGGTTGCTCCGCCGTGGCGACCCCCAAGGAGG
TGGTGGAGGCCTGCGAGCTGACGTACCTTATGCTCTCCGACCTGGAGGCA
TCCAAGTGAGTATTATGGGCCAAGGAATGGCGTCCAACCTCGCCAAGGCA
GGCGCTAAGGTTGTCGTCTGGAATCGCAGCGAGGGCAAACGGTCGGCCTT
CGTCGCAGAGCATGAGGGTTGCTCCGCCGTGGCGACCCCCAAGGAGGTGG
TGGAGGCCTGCGAGCTGACGTACCTTATGCTCTCCGACCTGGAGGCATCC
AAGTGA
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