mRNA_S-firma_F_contig10973.1286.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10973.1286.1
Unique NamemRNA_S-firma_F_contig10973.1286.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10973.1286.1 vs. uniprot
Match: D7FPW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW0_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.080e-22
Identity = 63/131 (48.09%), Postives = 77/131 (58.78%), Query Frame = 1 
Query:    1 MGAGLAAQRGWPQGQENEPLSPHSTEGATSSGEEHSTGQQEREHGGVGNDLLLYEEVART-EVQPLEDGDYARNYGSSASLTNLVPLDRRRSTIVEEDGETQQAGSASLLQNDWDSVPGQNEPLEQRDGRE 390
            MGAGLAAQRGWPQGQE++P SP  T    +                  + LLL+EE A T EVQPLED D+ARNYGSSASL +LVPLDR+R + +E +      GS S           +++ LE RDGRE
Sbjct:    1 MGAGLAAQRGWPQGQEDDPSSPQRT---GTXXXXXXXXXXXXXXXSRRSSLLLFEETADTSEVQPLEDSDFARNYGSSASLASLVPLDRKRWSSIEAENGNASVGSGSA------GDAAEDDHLEARDGRE 122
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10973.1286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPW0_ECTSI1.080e-2248.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10973contigS-firma_F_contig10973:220..609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_008500.1
Exons1
Model size390
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.6290383-CDS-S-firma_F_contig10973:219..6091622815641.6290383-CDS-S-firma_F_contig10973:219..609Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10973 220..609 -
1696949473.0362055-CDS-S-firma_F_contig10973:219..6091696949473.0362055-CDS-S-firma_F_contig10973:219..609Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10973 220..609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10973.1286.1prot_S-firma_F_contig10973.1286.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10973 220..609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10973.1286.1

>prot_S-firma_F_contig10973.1286.1 ID=prot_S-firma_F_contig10973.1286.1|Name=mRNA_S-firma_F_contig10973.1286.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=130bp
MGAGLAAQRGWPQGQENEPLSPHSTEGATSSGEEHSTGQQEREHGGVGND
LLLYEEVARTEVQPLEDGDYARNYGSSASLTNLVPLDRRRSTIVEEDGET
QQAGSASLLQNDWDSVPGQNEPLEQRDGRE
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mRNA from alignment at S-firma_F_contig10973:220..609-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10973.1286.1 ID=mRNA_S-firma_F_contig10973.1286.1|Name=mRNA_S-firma_F_contig10973.1286.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=390bp|location=Sequence derived from alignment at S-firma_F_contig10973:220..609- (Sphaerotrichia firma ET2_F female)
ATGGGAGCAGGGTTGGCCGCACAGCGGGGCTGGCCTCAGGGCCAAGAGAA
TGAGCCGCTGTCGCCCCACAGCACGGAAGGAGCCACCTCTTCAGGAGAGG
AACACTCGACAGGCCAACAAGAGCGGGAGCACGGCGGCGTCGGCAACGAC
CTCCTGCTGTACGAGGAGGTCGCTCGCACCGAGGTGCAGCCACTAGAGGA
CGGCGACTATGCTCGGAACTACGGCTCTTCTGCTAGCCTCACGAACCTGG
TGCCCCTCGATCGGAGGCGGTCTACAATAGTTGAGGAGGACGGGGAGACT
CAGCAGGCTGGCAGTGCCTCCCTGTTGCAGAACGATTGGGACTCGGTCCC
GGGCCAGAACGAGCCGCTCGAGCAGCGAGACGGACGAGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10973:220..609-

>mRNA_S-firma_F_contig10973.1286.1 ID=mRNA_S-firma_F_contig10973.1286.1|Name=mRNA_S-firma_F_contig10973.1286.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=780bp|location=Sequence derived from alignment at S-firma_F_contig10973:220..609- (Sphaerotrichia firma ET2_F female)
ATGGGAGCAGGGTTGGCCGCACAGCGGGGCTGGCCTCAGGGCCAAGAGAA
TGAGCCGCTGTCGCCCCACAGCACGGAAGGAGCCACCTCTTCAGGAGAGG
AACACTCGACAGGCCAACAAGAGCGGGAGCACGGCGGCGTCGGCAACGAC
CTCCTGCTGTACGAGGAGGTCGCTCGCACCGAGGTGCAGCCACTAGAGGA
CGGCGACTATGCTCGGAACTACGGCTCTTCTGCTAGCCTCACGAACCTGG
TGCCCCTCGATCGGAGGCGGTCTACAATAGTTGAGGAGGACGGGGAGACT
CAGCAGGCTGGCAGTGCCTCCCTGTTGCAGAACGATTGGGACTCGGTCCC
GGGCCAGAACGAGCCGCTCGAGCAGCGAGACGGACGAGAGATGGGAGCAG
GGTTGGCCGCACAGCGGGGCTGGCCTCAGGGCCAAGAGAATGAGCCGCTG
TCGCCCCACAGCACGGAAGGAGCCACCTCTTCAGGAGAGGAACACTCGAC
AGGCCAACAAGAGCGGGAGCACGGCGGCGTCGGCAACGACCTCCTGCTGT
ACGAGGAGGTCGCTCGCACCGAGGTGCAGCCACTAGAGGACGGCGACTAT
GCTCGGAACTACGGCTCTTCTGCTAGCCTCACGAACCTGGTGCCCCTCGA
TCGGAGGCGGTCTACAATAGTTGAGGAGGACGGGGAGACTCAGCAGGCTG
GCAGTGCCTCCCTGTTGCAGAACGATTGGGACTCGGTCCCGGGCCAGAAC
GAGCCGCTCGAGCAGCGAGACGGACGAGAG
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