mRNA_S-firma_F_contig10970.1283.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10970.1283.1
Unique NamemRNA_S-firma_F_contig10970.1283.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10970.1283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10970contigS-firma_F_contig10970:1035..1776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.3848555-CDS-S-firma_F_contig10970:1034..12691622815641.3848555-CDS-S-firma_F_contig10970:1034..1269Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10970 1035..1269 -
1696949472.8837092-CDS-S-firma_F_contig10970:1034..12691696949472.8837092-CDS-S-firma_F_contig10970:1034..1269Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10970 1035..1269 -
1622815641.3962944-CDS-S-firma_F_contig10970:1693..17761622815641.3962944-CDS-S-firma_F_contig10970:1693..1776Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10970 1694..1776 -
1696949472.8932784-CDS-S-firma_F_contig10970:1693..17761696949472.8932784-CDS-S-firma_F_contig10970:1693..1776Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10970 1694..1776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10970.1283.1prot_S-firma_F_contig10970.1283.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10970 1035..1776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10970.1283.1

>prot_S-firma_F_contig10970.1283.1 ID=prot_S-firma_F_contig10970.1283.1|Name=mRNA_S-firma_F_contig10970.1283.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=106bp
FKAPSYFWGTLGAEEDERRLRAGIGESSSLFTRQEGAREKKKTHGGSGGG
ESCRARRHPLPLVLLLRFCFFFSVGGGGVGGAACLPLRRQVRRRCLGCRA
RRVRGG
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mRNA from alignment at S-firma_F_contig10970:1035..1776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10970.1283.1 ID=mRNA_S-firma_F_contig10970.1283.1|Name=mRNA_S-firma_F_contig10970.1283.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=742bp|location=Sequence derived from alignment at S-firma_F_contig10970:1035..1776- (Sphaerotrichia firma ET2_F female)
TTCAAAGCCCCGTCTTACTTCTGGGGGACGCTGGGTGCCGAAGAGGATGA
GCGAAGGCTCCGGGCGGGGATAGGCGAGAGCAGGTGAGGTGCGTGTGTGA
GAGGGAGAGAGAGAGGACCAAAATAAATCGGATGATTTTTTTTTCATTTT
TTTGCGGACCTCGGCGTGTGCGCTTTTTTTTCGGCAGTCCAGTGTCCATG
CCATGCGAGATGCCGCCGCTCCATCCTATCCTTTTTTGAGAGGTGGGGTT
GATCACATATCACATGCATGTCGGAAAAGCCATGGACCTGGTTCCACGCA
CAACCACCCACACAATCTTCCCTGTCTCTCCCGCGTCCACGATCCGTTCG
TTCTGCACCGGCAACAAAATGAATGAAAATTTGTTTTGATGTGTTTTGTC
TACACCCACATCATCCTCGAAAAATTAAAAATTGTTTTTTGAGATTCGCT
CTCCCATCTCCCATCCACCCCCGCTCCGTCGCCGGCGCTCGTACATCGTA
CATACAGCTCTCTGTTCACACGGCAAGAAGGCGCGCGAGAGAAGAAGAAG
ACGCATGGCGGCTCGGGCGGCGGCGAGAGCTGCCGTGCTCGTCGCCACCC
TCTGCCTCTGGTGCTGCTGCTACGCTTCTGCTTCTTCTTCTCCGTCGGAG
GTGGAGGAGTCGGAGGAGCAGCATGTTTACCGCTACGTCGTCAGGTCCGC
CGCCGATGCCTTGGTTGTCGGGCTCGCCGCGTCCGCGGAGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10970:1035..1776-

>mRNA_S-firma_F_contig10970.1283.1 ID=mRNA_S-firma_F_contig10970.1283.1|Name=mRNA_S-firma_F_contig10970.1283.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=636bp|location=Sequence derived from alignment at S-firma_F_contig10970:1035..1776- (Sphaerotrichia firma ET2_F female)
TTCAAAGCCCCGTCTTACTTCTGGGGGACGCTGGGTGCCGAAGAGGATGA
GCGAAGGCTCCGGGCGGGGATAGGCGAGAGCAGTTCAAAGCCCCGTCTTA
CTTCTGGGGGACGCTGGGTGCCGAAGAGGATGAGCGAAGGCTCCGGGCGG
GGATAGGCGAGAGCAGCTCTCTGTTCACACGGCAAGAAGGCGCGCGAGAG
AAGAAGAAGACGCATGGCGGCTCGGGCGGCGGCGAGAGCTGCCGTGCTCG
TCGCCACCCTCTGCCTCTGGTGCTGCTGCTACGCTTCTGCTTCTTCTTCT
CCGTCGGAGGTGGAGGAGTCGGAGGAGCAGCATGTTTACCGCTACGTCGT
CAGGTCCGCCGCCGATGCCTTGGTTGTCGGGCTCGCCGCGTCCGCGGAGG
GCTCTCTGTTCACACGGCAAGAAGGCGCGCGAGAGAAGAAGAAGACGCAT
GGCGGCTCGGGCGGCGGCGAGAGCTGCCGTGCTCGTCGCCACCCTCTGCC
TCTGGTGCTGCTGCTACGCTTCTGCTTCTTCTTCTCCGTCGGAGGTGGAG
GAGTCGGAGGAGCAGCATGTTTACCGCTACGTCGTCAGGTCCGCCGCCGA
TGCCTTGGTTGTCGGGCTCGCCGCGTCCGCGGAGGG
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