mRNA_S-firma_F_contig1097.1282.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1097.1282.1
Unique NamemRNA_S-firma_F_contig1097.1282.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1097.1282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1097contigS-firma_F_contig1097:18918..19359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size442
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1097.1282.1prot_S-firma_F_contig1097.1282.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1097 18939..19349 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.0590475-UTR-S-firma_F_contig1097:18917..189381622815641.0590475-UTR-S-firma_F_contig1097:18917..18938Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1097 18918..18938 +
1696949472.6398423-UTR-S-firma_F_contig1097:18917..189381696949472.6398423-UTR-S-firma_F_contig1097:18917..18938Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1097 18918..18938 +
1622815641.084635-UTR-S-firma_F_contig1097:19349..193591622815641.084635-UTR-S-firma_F_contig1097:19349..19359Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1097 19350..19359 +
1696949472.6639483-UTR-S-firma_F_contig1097:19349..193591696949472.6639483-UTR-S-firma_F_contig1097:19349..19359Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1097 19350..19359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.0717442-CDS-S-firma_F_contig1097:18938..193491622815641.0717442-CDS-S-firma_F_contig1097:18938..19349Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1097 18939..19349 +
1696949472.654095-CDS-S-firma_F_contig1097:18938..193491696949472.654095-CDS-S-firma_F_contig1097:18938..19349Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1097 18939..19349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1097.1282.1

>prot_S-firma_F_contig1097.1282.1 ID=prot_S-firma_F_contig1097.1282.1|Name=mRNA_S-firma_F_contig1097.1282.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=137bp
MRYTYPTYILTNSLFNSLFPTRAASSAFHGLSENTDTNKPSLDDSPRTYR
WYQTILSTPQLFKTSQSLYPTSLLENLHFLLMFLKPSLSTSCYSKTLPPI
PRFSDRTDNICMHTLASSVLTEIPKSDDRRVLTSNT*
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mRNA from alignment at S-firma_F_contig1097:18918..19359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1097.1282.1 ID=mRNA_S-firma_F_contig1097.1282.1|Name=mRNA_S-firma_F_contig1097.1282.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=442bp|location=Sequence derived from alignment at S-firma_F_contig1097:18918..19359+ (Sphaerotrichia firma ET2_F female)
GTGACTTTGCGTCATCCCGCAATGAGATATACATATCCTACATACATTCT
TACCAACAGTCTCTTCAACAGTCTCTTCCCCACCCGAGCCGCATCATCCG
CGTTCCACGGATTATCCGAAAACACCGATACAAACAAGCCTTCCCTTGAT
GACTCCCCACGTACGTATAGGTGGTATCAAACTATACTCTCAACTCCACA
ACTTTTCAAAACTTCGCAGTCATTATACCCAACATCCCTCCTCGAAAATC
TTCACTTCCTACTCATGTTCCTCAAACCTTCACTCTCTACTTCGTGCTAC
TCAAAAACATTGCCCCCAATTCCACGCTTCTCGGATAGAACCGACAATAT
ATGTATGCACACGCTTGCCAGCTCGGTGTTGACGGAAATCCCCAAAAGCG
ACGATCGACGGGTGCTTACATCAAATACTTGAAAATATACAC
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Coding sequence (CDS) from alignment at S-firma_F_contig1097:18918..19359+

>mRNA_S-firma_F_contig1097.1282.1 ID=mRNA_S-firma_F_contig1097.1282.1|Name=mRNA_S-firma_F_contig1097.1282.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=822bp|location=Sequence derived from alignment at S-firma_F_contig1097:18918..19359+ (Sphaerotrichia firma ET2_F female)
ATGAGATATACATATCCTACATACATTCTTACCAACAGTCTCTTCAACAG
TCTCTTCCCCACCCGAGCCGCATCATCCGCGTTCCACGGATTATCCGAAA
ACACCGATACAAACAAGCCTTCCCTTGATGACTCCCCACGTACGTATAGG
TGGTATCAAACTATACTCTCAACTCCACAACTTTTCAAAACTTCGCAGTC
ATTATACCCAACATCCCTCCTCGAAAATCTTCACTTCCTACTCATGTTCC
TCAAACCTTCACTCTCTACTTCGTGCTACTCAAAAACATTGCCCCCAATT
CCACGCTTCTCGGATAGAACCGACAATATATGTATGCACACGCTTGCCAG
CTCGGTGTTGACGGAAATCCCCAAAAGCGACGATCGACGGGTGCTTACAT
CAAATACTTGAATGAGATATACATATCCTACATACATTCTTACCAACAGT
CTCTTCAACAGTCTCTTCCCCACCCGAGCCGCATCATCCGCGTTCCACGG
ATTATCCGAAAACACCGATACAAACAAGCCTTCCCTTGATGACTCCCCAC
GTACGTATAGGTGGTATCAAACTATACTCTCAACTCCACAACTTTTCAAA
ACTTCGCAGTCATTATACCCAACATCCCTCCTCGAAAATCTTCACTTCCT
ACTCATGTTCCTCAAACCTTCACTCTCTACTTCGTGCTACTCAAAAACAT
TGCCCCCAATTCCACGCTTCTCGGATAGAACCGACAATATATGTATGCAC
ACGCTTGCCAGCTCGGTGTTGACGGAAATCCCCAAAAGCGACGATCGACG
GGTGCTTACATCAAATACTTGA
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