mRNA_S-firma_F_contig10963.1278.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10963.1278.1
Unique NamemRNA_S-firma_F_contig10963.1278.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10963.1278.1 vs. uniprot
Match: A0A812NQC8_9DINO (Tnfaip1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NQC8_9DINO)

HSP 1 Score: 103 bits (257), Expect = 5.310e-25
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    7 FEDSLQSRWKQDT---------VTDKPRLKLNIGGQEFEVASATLGNADAGSLLAALASPRPPMDSD--PSGAFFFDRDWWQFRLVLQFLREGDACLPAAKAVLKQLYREAAFWRLPSLQDAVR 345
             ED+L+SRW ++               R+ +N+GGQ FE  +  L   D GS LA LA  RPP D D  P GA+FF+RDWW FR VLQ+LREG+A LP +K +LK LY EA ++ +  L+ +VR
Sbjct:    1 LEDALKSRWYEEASEGSASGGAADGSKRVLINVGGQLFETTARVL-RRDPGSALAQLAD-RPPPDEDACPDGAWFFERDWWTFRFVLQWLREGEASLPRSKPLLKALYAEARYFGMQGLRASVR 122          
BLAST of mRNA_S-firma_F_contig10963.1278.1 vs. uniprot
Match: A0A5A8CLX3_CAFRO (BTB domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CLX3_CAFRO)

HSP 1 Score: 103 bits (258), Expect = 1.590e-24
Identity = 58/126 (46.03%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    1 RSFEDSLQSRWKQDT---------VTDKPRLKLNIGGQEFEVASATLGNADAGSLLAALASPRPPMDSD--PSGAFFFDRDWWQFRLVLQFLREGDACLPAAKAVLKQLYREAAFWRLPSLQDAVR 345
            R  ED+L+SRW ++               R+ +N+GGQ FE  +  L   D GS LA LA  RPP D D  P GA+FF+RDWW FR VLQ+LREG+A LP +K +LK LY EA ++ +  L+ +VR
Sbjct:   74 RWLEDALKSRWYEEASEGSASGGAADGSKRVLINVGGQLFETTARVL-RRDPGSALAQLAD-RPPPDEDACPDGAWFFERDWWTFRFVLQWLREGEASLPRSKPLLKALYAEARYFGMQGLRASVR 197          
BLAST of mRNA_S-firma_F_contig10963.1278.1 vs. uniprot
Match: A0A7S3LJB0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LJB0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.950e-23
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 RSFEDSLQSRWKQDTV---TDKPRLKLNIGGQEFEVASATLGNADAGSLLAALASPRPPMDSDPSGAFFFDRDWWQFRLVLQFLREGDACLPAAKAVLKQLYREAAFWRLPSLQDAVR 345
            ++FE + +S W Q T+   +D  R+KLN+GG+ FE     L   D GSLLAAL S   P+  D  G  F DRDWW FR +L FLR+G   +P  + +L QLYREA F+ L +++ A+R
Sbjct:   66 KNFEFARKSSWFQSTLLPTSDLRRIKLNVGGKLFETTERVL-KRDPGSLLAALVSDDAPLKEDEEGTIFIDRDWWLFRFLLAFLRDGR--IPKDQDLLSQLYREAGFYNLETIRHAIR 180          
BLAST of mRNA_S-firma_F_contig10963.1278.1 vs. uniprot
Match: A0A7S3ZZW9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZW9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.940e-21
Identity = 55/101 (54.46%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   46 VTDKPRLKLNIGGQEFEVASATLGNADAGSLLAALASPRPPMDSDPSG--AFFFDRDWWQFRLVLQFLREGDACLPAAKAVLKQLYREAAFWRLPSLQDAV 342
             T + RL+LN+GGQ FE+  A L N D  SLLAALA+   P+  D  G    + DRDWW FR VL FLR+G   LPA+ ++   LYREAAFWRL SLQ AV
Sbjct:  107 ATPQKRLRLNVGGQIFEINVAKLDN-DPDSLLAALAAEDCPLFGDDRGKRVAYVDRDWWTFRHVLAFLRDG--VLPASPSLALPLYREAAFWRLGSLQRAV 204          
BLAST of mRNA_S-firma_F_contig10963.1278.1 vs. uniprot
Match: A0A835YWA5_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWA5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.150e-21
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   61 RLKLNIGGQEFEVASATLGNADAGSLLAALASPRPPMDSDPSGAFFFDRDWWQFRLVLQFLREGDACLPAAKAVLKQLYREAAFWRLPSLQDAV 342
            R+KLN+GGQ FEV++  L   D  SLLAAL     P+ +D  G  + DRDWW FR +L+FLR+G   LP+ + +L QLYREA +WR  SL+ A+
Sbjct:  125 RVKLNVGGQVFEVSAPVL-QRDPHSLLAALCDESCPLKTDTDGTIYVDRDWWLFRYLLKFLRDG--ALPSDRTLLAQLYREAGYWRCSSLRTAI 215          
BLAST of mRNA_S-firma_F_contig10963.1278.1 vs. uniprot
Match: A0A7S3ME34_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3ME34_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 9.060e-21
Identity = 53/124 (42.74%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   13 DSLQSRWKQDTVTDKP-------------RLKLNIGGQEFEVASATLGNADAGSLLAALASPRPPMDSDPSGAFF-FDRDWWQFRLVLQFLREGDACLPAAKAVLKQLYREAAFWRLPSLQDAV 342
            D ++ R K  T+  +P              + +N+GG  FE   + L   D  SLLA L SP PP+  DP G FF FDRDWW FR V+ F+R+G   LP  + +L QLYREA FW L S+Q A+
Sbjct:   61 DKIEERKKALTIIQRPDWLPESLKPTAEAHVLINVGGLMFESPVSIL-KRDEKSLLAQLCSPNPPVLPDPDGGFFYFDRDWWLFRYVMAFMRDGT--LPEDRTLLSQLYREAVFWNLSSMQRAI 181          
BLAST of mRNA_S-firma_F_contig10963.1278.1 vs. uniprot
Match: K3W596_GLOUD (BTB domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W596_GLOUD)

HSP 1 Score: 93.2 bits (230), Expect = 2.410e-20
Identity = 53/115 (46.09%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    7 FEDSLQSRWKQDTV---TDKPRLKLNIGGQEFEVASATLGNADAGSLLAALASPRPPMDSDPSGAFFFDRDWWQFRLVLQFLREGDACLPAAKAVLKQLYREAAFWRLPSLQDAV 342
            FE SL S W   +V       R+ +N+GGQ FE++SA L + D GSLLAA    + P+     G F  DRDWW FR VL FLR+G   LP    +L++LY E+ FWRL SL+ A+
Sbjct:   43 FEASLTSDWFCSSVFPLVHDRRITINVGGQLFELSSA-LASRDLGSLLAAFVDDQSPLSVLECGCFRIDRDWWLFRYVLSFLRDG--ILPQDPKLLRELYLESEFWRLGSLRKAI 154          
BLAST of mRNA_S-firma_F_contig10963.1278.1 vs. uniprot
Match: A0A6G0XCW4_9STRA (BTB domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCW4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.470e-20
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    7 FEDSLQSRW--KQDTVTDKPRLKLNIGGQEFEVASATLGNADAGSLLAALASPRPPMDSDPSGAFFFDRDWWQFRLVLQFLREGDACLPAAKAVLKQLYREAAFWRLPSLQDAV 342
            F+ SL S W   +D  T K RL+L +GGQ+FEV S T+   D  SLLAAL +   P+ +   G F  DRDW  FRL+L FLR+G   LP    +L+ LY EA FW+  SL+ A+
Sbjct:   59 FQASLASDWFCHEDKATTKERLRLQVGGQDFEV-SITIARKDPKSLLAALVASDSPLTASDLGCFCIDRDWNLFRLILNFLRDG--ILPNDPKLLRDLYIEADFWKFESLKLAI 169          
BLAST of mRNA_S-firma_F_contig10963.1278.1 vs. uniprot
Match: W4FIW1_9STRA (BTB domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FIW1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.470e-19
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    7 FEDSLQSRW--KQDTVTDKPRLKLNIGGQEFEVASATLGNADAGSLLAALASPRPPMDSDPSGAFFFDRDWWQFRLVLQFLREGDACLPAAKAVLKQLYREAAFWRLPSLQDAV 342
            FE SL S W   +D  T K RL++ +GGQEFEV +  +   D  SLLAAL +P  P+     G F  DRDW  FRL+L FLR+G   LP    +L+ LY E+ +W+  SL+ A+
Sbjct:   61 FEASLSSDWFCHEDNSTAKDRLRIQVGGQEFEV-TLHIARKDPKSLLAALVAPDSPLAPSAVGCFCIDRDWNLFRLMLNFLRDG--ILPNDPKLLRDLYVESEYWKFDSLKLAI 171          
BLAST of mRNA_S-firma_F_contig10963.1278.1 vs. uniprot
Match: A0A2D4BZS6_PYTIN (BTB_2 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZS6_PYTIN)

HSP 1 Score: 92.0 bits (227), Expect = 2.110e-19
Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    7 FEDSLQSRW----KQDTVTDKPRLKLNIGGQEFEVASATLGNADAGSLLAALASPRPPMDSDPSGAFFFDRDWWQFRLVLQFLREGDACLPAAKAVLKQLYREAAFWRLPSLQDAV 342
            FE SL S W       TV D+ RL L++GGQ FE+ SA +   DAGSLLAAL +   P+     G F  DRDWW FR VL FLR+G   LP    +L++LY E+ FW+L S++ A+
Sbjct:  134 FEASLASDWFCLSAFPTVHDR-RLTLDVGGQLFEI-SAPIALKDAGSLLAALVADDSPLGPLECGCFRVDRDWWLFRYVLHFLRDG--LLPQDPKLLRELYLESEFWKLESMRKAI 245          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10963.1278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812NQC8_9DINO5.310e-2545.97Tnfaip1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]
A0A5A8CLX3_CAFRO1.590e-2446.03BTB domain-containing protein n=2 Tax=Cafeteria ro... [more]
A0A7S3LJB0_9STRA2.950e-2344.92Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S3ZZW9_9STRA2.940e-2154.46Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A835YWA5_9STRA4.150e-2150.00BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3ME34_9STRA9.060e-2142.74Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
K3W596_GLOUD2.410e-2046.09BTB domain-containing protein n=1 Tax=Globisporang... [more]
A0A6G0XCW4_9STRA2.470e-2046.49BTB domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4FIW1_9STRA1.470e-1944.74BTB domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A2D4BZS6_PYTIN2.110e-1947.41BTB_2 domain-containing protein n=1 Tax=Pythium in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10963contigS-firma_F_contig10963:2685..3078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog36331.EPrPI00000021504
PFAMsBTB_2
Max annot lvl121069|Pythiales
Evalue3.04e-21
EggNOG OGsKOG2723@1|root,KOG2723@2759|Eukaryota,1MANN@121069|Pythiales
DescriptionBTB/POZ domain
COG categoryS
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.9317284-CDS-S-firma_F_contig10963:2684..28961622815640.9317284-CDS-S-firma_F_contig10963:2684..2896Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10963 2685..2896 +
1696949472.576238-CDS-S-firma_F_contig10963:2684..28961696949472.576238-CDS-S-firma_F_contig10963:2684..2896Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10963 2685..2896 +
1622815640.9431918-CDS-S-firma_F_contig10963:2945..30781622815640.9431918-CDS-S-firma_F_contig10963:2945..3078Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10963 2946..3078 +
1696949472.5897899-CDS-S-firma_F_contig10963:2945..30781696949472.5897899-CDS-S-firma_F_contig10963:2945..3078Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10963 2946..3078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10963.1278.1prot_S-firma_F_contig10963.1278.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10963 2685..3078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10963.1278.1

>prot_S-firma_F_contig10963.1278.1 ID=prot_S-firma_F_contig10963.1278.1|Name=mRNA_S-firma_F_contig10963.1278.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=115bp
RSFEDSLQSRWKQDTVTDKPRLKLNIGGQEFEVASATLGNADAGSLLAAL
ASPRPPMDSDPSGAFFFDRDWWQFRLVLQFLREGDACLPAAKAVLKQLYR
EAAFWRLPSLQDAVR
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mRNA from alignment at S-firma_F_contig10963:2685..3078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10963.1278.1 ID=mRNA_S-firma_F_contig10963.1278.1|Name=mRNA_S-firma_F_contig10963.1278.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=394bp|location=Sequence derived from alignment at S-firma_F_contig10963:2685..3078+ (Sphaerotrichia firma ET2_F female)
CGCAGCTTTGAGGACTCCCTCCAGTCCCGCTGGAAGCAGGACACCGTGAC CGACAAGCCCAGGCTTAAGCTCAACATTGGGGGCCAGGAGTTCGAGGTGG CGTCGGCCACCCTTGGCAACGCCGACGCTGGTTCCTTGCTCGCCGCCCTG GCGTCACCCAGGCCCCCAATGGACAGCGACCCCAGCGGGGCTTTCTTCTT TGACCGTGACTGGTGAGAGTGCTGGGCAGAAGCTGCCGCCGCCTGCCTGA CGCCCCCTCAGGTGGCAGTTCCGCCTCGTGTTGCAGTTCTTGAGGGAAGG TGACGCCTGCCTCCCGGCGGCCAAAGCCGTCTTGAAGCAGCTGTACCGAG AGGCTGCGTTTTGGCGGCTGCCATCCCTACAGGACGCCGTCCGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10963:2685..3078+

>mRNA_S-firma_F_contig10963.1278.1 ID=mRNA_S-firma_F_contig10963.1278.1|Name=mRNA_S-firma_F_contig10963.1278.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=690bp|location=Sequence derived from alignment at S-firma_F_contig10963:2685..3078+ (Sphaerotrichia firma ET2_F female)
CGCAGCTTTGAGGACTCCCTCCAGTCCCGCTGGAAGCAGGACACCGTGAC
CGACAAGCCCAGGCTTAAGCTCAACATTGGGGGCCAGGAGTTCGAGGTGG
CGTCGGCCACCCTTGGCAACGCCGACGCTGGTTCCTTGCTCGCCGCCCTG
GCGTCACCCAGGCCCCCAATGGACAGCGACCCCAGCGGGGCTTTCTTCTT
TGACCGTGACTGCGCAGCTTTGAGGACTCCCTCCAGTCCCGCTGGAAGCA
GGACACCGTGACCGACAAGCCCAGGCTTAAGCTCAACATTGGGGGCCAGG
AGTTCGAGGTGGCGTCGGCCACCCTTGGCAACGCCGACGCTGGTTCCTTG
CTCGCCGCCCTGGCGTCACCCAGGCCCCCAATGGACAGCGACCCCAGCGG
GGCTTTCTTCTTTGACCGTGACTGGTGGCAGTTCCGCCTCGTGTTGCAGT
TCTTGAGGGAAGGTGACGCCTGCCTCCCGGCGGCCAAAGCCGTCTTGAAG
CAGCTGTACCGAGAGGCTGCGTTTTGGCGGCTGCCATCCCTACAGGACGC
CGTCCGCGTGGCAGTTCCGCCTCGTGTTGCAGTTCTTGAGGGAAGGTGAC
GCCTGCCTCCCGGCGGCCAAAGCCGTCTTGAAGCAGCTGTACCGAGAGGC
TGCGTTTTGGCGGCTGCCATCCCTACAGGACGCCGTCCGC
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