mRNA_S-firma_F_contig10960.1276.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10960.1276.1
Unique NamemRNA_S-firma_F_contig10960.1276.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10960.1276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10960contigS-firma_F_contig10960:2956..4247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size388
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10960.1276.1prot_S-firma_F_contig10960.1276.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10960 2956..4247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.7951663-CDS-S-firma_F_contig10960:2955..30421622815640.7951663-CDS-S-firma_F_contig10960:2955..3042Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10960 2956..3042 +
1696949472.523228-CDS-S-firma_F_contig10960:2955..30421696949472.523228-CDS-S-firma_F_contig10960:2955..3042Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10960 2956..3042 +
1622815640.8140345-CDS-S-firma_F_contig10960:3310..34341622815640.8140345-CDS-S-firma_F_contig10960:3310..3434Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10960 3311..3434 +
1696949472.532716-CDS-S-firma_F_contig10960:3310..34341696949472.532716-CDS-S-firma_F_contig10960:3310..3434Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10960 3311..3434 +
1622815640.8317738-CDS-S-firma_F_contig10960:4071..42471622815640.8317738-CDS-S-firma_F_contig10960:4071..4247Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10960 4072..4247 +
1696949472.5446086-CDS-S-firma_F_contig10960:4071..42471696949472.5446086-CDS-S-firma_F_contig10960:4071..4247Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10960 4072..4247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10960.1276.1

>prot_S-firma_F_contig10960.1276.1 ID=prot_S-firma_F_contig10960.1276.1|Name=mRNA_S-firma_F_contig10960.1276.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=129bp
AKRVAAAKARRKFDKAASTLGKVERRLGNVCEGETNDSDKSSGSGDDWSS
GESSGDTGSWFSEDELETDEDEAGGVDATAAVKAAVAAAEVEVAGARKDL
AERVEALKVAAKETKRTCRRLEQVIVGV*
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mRNA from alignment at S-firma_F_contig10960:2956..4247+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10960.1276.1 ID=mRNA_S-firma_F_contig10960.1276.1|Name=mRNA_S-firma_F_contig10960.1276.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1292bp|location=Sequence derived from alignment at S-firma_F_contig10960:2956..4247+ (Sphaerotrichia firma ET2_F female)
GCCAAGAGGGTGGCCGCCGCAAAGGCTCGGCGGAAGTTTGACAAGGCCGC
AAGCACCCTGGGCAAAGTGGAGCGGAGATTAGGGAATGTGGGTCGAAAGA
TGGCGTGCTTTGTACCCACCCTCCCTCGGCTAGTCGGGTTGCTTGTCAAG
TGTGAAAGGGTATTTGTTCTGGAGGTAATTTTCTCAGTGTGAGGGTTCTG
TCGAGCTGATAGAGGTCGGCATGTGGGTTCATCTTCACCGGCCTTTCTTG
CCGCAAACAGGACACAACAACGGTGATACGTAGTTTCCGCTCGTTCTCGT
CCCGTGTGGATTCGACCACCACATTGTTATCCGCGGCCGGTTCGACGTGC
GTCAGGTATGTGAGGGCGAAACGAACGACTCCGACAAGAGCAGCGGCAGT
GGCGACGACTGGAGCAGTGGAGAGAGCAGTGGAGACACGGGTAGCTGGTT
CAGCGAAGACGAGCTGGAGACGGATGAAGGTTAGAGCACCCAATGCTGAC
AATACCAACCAATGTCGGTACAGATAGACCATGAGCGCAAGAGGTGTCTT
GGACGTGTCTACCGTCGTATCCTCTGAGGTTTAGTTTGTCCCGGGGGGGT
GTTTGGTTTTGTTTAAACAAATTCCCTACCCCCAAACTCAAAGGTAGAGG
GGCGATAATTCATCCCAAGGCGAAGGGTCCCCGCGGGCGTTGTTTGGTTT
CTGTTGTGGTGCCCCTACTGCTGTACAAAGCTCATGGTGCTCCATTGTCT
TGATGTGAACACACGGCTGCACCAAACAAACACCGATAACGACAACAACA
ACATTGTTTTGATGTGACGGGTACAGCCATGGGCTATGCCGTGGATTTGT
GTGCGAAACTCCCGTGAGGCGCCTCAGCATTTGACCAAAAAAAGAACACC
GCGGGGCAAAATGAAAGGTAGAAGTCAAAGGTAGAAGGGTGGGGGGAAAA
ACACACGGGGCAGACACAACGTTTTTGCGATCCGAAACGTTTTTGCGATC
CCCAGCCGGTGGGAGATGGTAATGACACACATGTGTGTGGGGTGGAGGGC
AGAGTCAGAGGAATTTACTGTATACGCCCAGTGACCCGCTCCTTCTACCG
CATTTGCGCCCCAAAGACGAAGCAGGCGGTGTAGACGCGACAGCGGCAGT
AAAAGCGGCGGTAGCAGCGGCAGAAGTGGAGGTGGCGGGCGCCCGTAAGG
ACCTGGCGGAACGCGTCGAGGCTCTTAAAGTTGCCGCGAAGGAGACCAAG
AGAACGTGCAGGCGGTTGGAACAGGTGATTGTGGGTGTGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10960:2956..4247+

>mRNA_S-firma_F_contig10960.1276.1 ID=mRNA_S-firma_F_contig10960.1276.1|Name=mRNA_S-firma_F_contig10960.1276.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=774bp|location=Sequence derived from alignment at S-firma_F_contig10960:2956..4247+ (Sphaerotrichia firma ET2_F female)
GCCAAGAGGGTGGCCGCCGCAAAGGCTCGGCGGAAGTTTGACAAGGCCGC
AAGCACCCTGGGCAAAGTGGAGCGGAGATTAGGGAATGCCAAGAGGGTGG
CCGCCGCAAAGGCTCGGCGGAAGTTTGACAAGGCCGCAAGCACCCTGGGC
AAAGTGGAGCGGAGATTAGGGAATGTATGTGAGGGCGAAACGAACGACTC
CGACAAGAGCAGCGGCAGTGGCGACGACTGGAGCAGTGGAGAGAGCAGTG
GAGACACGGGTAGCTGGTTCAGCGAAGACGAGCTGGAGACGGATGAAGGT
ATGTGAGGGCGAAACGAACGACTCCGACAAGAGCAGCGGCAGTGGCGACG
ACTGGAGCAGTGGAGAGAGCAGTGGAGACACGGGTAGCTGGTTCAGCGAA
GACGAGCTGGAGACGGATGAAGACGAAGCAGGCGGTGTAGACGCGACAGC
GGCAGTAAAAGCGGCGGTAGCAGCGGCAGAAGTGGAGGTGGCGGGCGCCC
GTAAGGACCTGGCGGAACGCGTCGAGGCTCTTAAAGTTGCCGCGAAGGAG
ACCAAGAGAACGTGCAGGCGGTTGGAACAGGTGATTGTGGGTGTGTAGAC
GAAGCAGGCGGTGTAGACGCGACAGCGGCAGTAAAAGCGGCGGTAGCAGC
GGCAGAAGTGGAGGTGGCGGGCGCCCGTAAGGACCTGGCGGAACGCGTCG
AGGCTCTTAAAGTTGCCGCGAAGGAGACCAAGAGAACGTGCAGGCGGTTG
GAACAGGTGATTGTGGGTGTGTAG
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