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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 3327 |
| Cds size | 1968 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815640.5035994-UTR-S-firma_F_contig1096:17198..17385 | 1622815640.5035994-UTR-S-firma_F_contig1096:17198..17385 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1096 17199..17385 + |
| 1696949472.4032228-UTR-S-firma_F_contig1096:17198..17385 | 1696949472.4032228-UTR-S-firma_F_contig1096:17198..17385 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1096 17199..17385 + |
| 1622815640.567598-UTR-S-firma_F_contig1096:20405..21577 | 1622815640.567598-UTR-S-firma_F_contig1096:20405..21577 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1096 20406..21577 + |
| 1696949472.449043-UTR-S-firma_F_contig1096:20405..21577 | 1696949472.449043-UTR-S-firma_F_contig1096:20405..21577 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1096 20406..21577 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815640.5232434-CDS-S-firma_F_contig1096:17385..19099 | 1622815640.5232434-CDS-S-firma_F_contig1096:17385..19099 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1096 17386..19099 + |
| 1696949472.4126565-CDS-S-firma_F_contig1096:17385..19099 | 1696949472.4126565-CDS-S-firma_F_contig1096:17385..19099 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1096 17386..19099 + |
| 1622815640.538389-CDS-S-firma_F_contig1096:19427..19514 | 1622815640.538389-CDS-S-firma_F_contig1096:19427..19514 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1096 19428..19514 + |
| 1696949472.427004-CDS-S-firma_F_contig1096:19427..19514 | 1696949472.427004-CDS-S-firma_F_contig1096:19427..19514 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1096 19428..19514 + |
| 1622815640.5508332-CDS-S-firma_F_contig1096:20238..20405 | 1622815640.5508332-CDS-S-firma_F_contig1096:20238..20405 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1096 20239..20405 + |
| 1696949472.439947-CDS-S-firma_F_contig1096:20238..20405 | 1696949472.439947-CDS-S-firma_F_contig1096:20238..20405 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1096 20239..20405 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1096.1275.1 >prot_S-firma_F_contig1096.1275.1 ID=prot_S-firma_F_contig1096.1275.1|Name=mRNA_S-firma_F_contig1096.1275.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=656bp
MPRLCEHRECSKQASYGMTGTNKAEKCAEHARDGMVNVRHKTCAQIGCNK IPSYGKAGTTKAELCAKHARTGMVNVVDKRCSHIGCNKRPSYGKAGTTKA ELCAKHARTGMVNVVGKTCSHSGCNKRPSYGKAGTNKAKHCVEHAMDGMV NVVSKRCAHIGCNKIPSYGQAGTTKAELCAKHARDGMVNVVSKRCGHIGC NKQPAYEKAGTTKAELCVEHARDGMVNVVTKRCGHIGCNKIPSYGKAGTT KAELCAEHARNGMVNVVNKRCGHIGCNKRPSYGKAGTTKAELCVGHARTG MVNVVDKRCSHSMCNKRPSYGKAGTTKAELCAKHARDGMVNVVEKRCGHI GCNKQPSYGKAGTTKAELCVEHAMDGMVNVVSKRCGHIGCNKIPSYGKAG TTEAELCAEHARNGMVNVRYETCAHIGCNEIPSYGKAGGSHRKEFCSQHS KEGMTILRTRRSRGMGRTNSGHGPIDSTGGAPGRRVGAWERPSDGSSSST PSGAASGGTSKRNNKRPRVSIAMPSMSVVAGAAARDGGSAPAAKRQALEP GGAAVKAEVTMPCKVDTSVSTGHFVGVHDEAGVGAFSHVPSDVSREHHGA GDPTSSGAERLEKMARVARGSQPSLEDEVAVKTEVAIARPTDVKQSNRDL MPGES* back to topmRNA from alignment at S-firma_F_contig1096:17199..21577+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig1096.1275.1 ID=mRNA_S-firma_F_contig1096.1275.1|Name=mRNA_S-firma_F_contig1096.1275.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4379bp|location=Sequence derived from alignment at S-firma_F_contig1096:17199..21577+ (Sphaerotrichia firma ET2_F female) CCGTGCTTGACGAGAGTAGAGAACGTGGAGACGAGCCTTCTGGTATTGTC
TACGGCTGTGATATCGACCACATCTCTGCGGCTTCGGTGTGTGGGATACG
TATAACCAAAGCATCCCGACAGCAGAGAGAGGTTGGTAGCCGCCGGTTGG
TCCGCGGCTCAGGAGAGTCACATACCAGTAGTGCAGGATGCCCAGACTTT
GCGAGCACCGAGAGTGTAGCAAGCAGGCGTCATACGGCATGACCGGCACC
AACAAGGCCGAGAAGTGCGCTGAGCACGCGAGGGACGGTATGGTGAACGT
CCGCCACAAAACGTGTGCCCAGATCGGTTGCAACAAGATCCCATCGTACG
GCAAGGCCGGCACCACCAAGGCGGAGCTCTGCGCTAAACACGCCAGGACC
GGCATGGTGAACGTCGTCGACAAGAGGTGTAGCCACATCGGGTGCAACAA
GCGGCCATCATACGGCAAGGCCGGCACCACCAAGGCGGAGCTCTGCGCTA
AACACGCCAGGACCGGCATGGTGAACGTCGTCGGCAAGACGTGTAGCCAC
AGTGGGTGCAACAAGCGGCCATCATACGGCAAGGCCGGCACCAACAAGGC
GAAGCACTGCGTTGAACACGCCATGGACGGTATGGTGAACGTCGTCAGCA
AGAGGTGTGCCCACATCGGGTGCAACAAGATCCCATCGTACGGCCAGGCC
GGCACCACCAAGGCGGAGCTCTGCGCTAAACACGCCAGGGACGGTATGGT
GAACGTCGTCAGCAAGAGGTGTGGCCACATCGGGTGCAACAAGCAACCAG
CATACGAAAAGGCGGGCACCACCAAGGCGGAGCTCTGCGTTGAACACGCC
AGAGACGGTATGGTGAACGTCGTCACCAAGAGGTGTGGCCACATCGGTTG
CAACAAGATCCCATCGTACGGCAAGGCTGGCACTACCAAGGCGGAGCTCT
GCGCTGAACACGCTCGGAACGGCATGGTGAACGTCGTCAACAAGAGGTGT
GGCCACATCGGGTGCAACAAGCGGCCATCATACGGCAAGGCAGGCACCAC
CAAGGCGGAGCTCTGCGTTGGACACGCCAGGACCGGCATGGTGAACGTCG
TCGACAAGAGGTGTAGCCACAGCATGTGCAACAAGCGGCCATCATACGGC
AAGGCCGGCACCACCAAGGCGGAGCTCTGCGCTAAACACGCCAGGGACGG
TATGGTGAACGTCGTTGAGAAGAGGTGTGGCCACATCGGGTGCAACAAGC
AACCATCATACGGCAAGGCCGGCACCACCAAGGCGGAGCTCTGCGTTGAA
CACGCCATGGACGGTATGGTGAACGTCGTCAGCAAGAGGTGTGGCCACAT
CGGTTGCAACAAGATCCCATCGTACGGCAAGGCTGGCACCACCGAGGCGG
AGCTCTGCGCTGAACACGCTCGGAACGGCATGGTGAACGTCCGCTACGAA
ACGTGTGCCCACATCGGTTGCAACGAGATCCCATCATACGGCAAGGCTGG
AGGGAGTCACAGAAAAGAGTTTTGTTCCCAACATTCCAAGGAAGGTATGA
CAATCCTGAGAACCCGCCGATCTCGTGGGATGGGAAGGACCAACAGCGGG
CATGGGCCAATCGATTCAACTGGAGGCGCCCCCGGTCGTCGTGTTGGTGC
ATGGGAAAGGCCCAGCGACGGATCTTCTTCGTCCACTCCCAGCGGCGCTG
CCTCTGGAGGTACGAGCAAGAGGAACAACAAGCGCCCCCGCGTGAGTATC
GCCATGCCTTCAATGTCGGTCGTAGCAGGAGCAGCAGCAAGAGATGGTGG
GTCGGCCCCGGCCGCGAAACGACAGGCTTTGGAGCCGGGTGGTGCTGCTG
TCAAGGCGGAAGTGACGATGCCGTGCAAGGTGGACACCTCGGTATCTACA
GGTGTGCCCACAACCTTCTGCACCGCTGCTTTTGGGAACGCGCGCTTGAT
ATTGGGCTGTTAATTGTTGAAGCATCAATTGTTGCCCCACACAGTAGAAG
GAGGTCTGACAAGGATTTTTGGATTGGGGCCATTTTGAAAAATGCCGTAC
AAAGCATACACCATCCATACAGCAGATCCACCAGACCGTTAGGGAAAGGT
TGTGCAAGAAGACACGTCTTGATTTACTCACACAGCGGCGGACGGGGCTG
CCCCTTACATGCATATATATGACGTGGTCTACCTCCAACCGCCGATTGTT
GCGTCTATTCAATAATGATGACAAAACAGGCCATTTTGTGGGTGTACATG
ACGAGGCAGGGGTTGGAGCTTTCTCCCACGTGCCCAGCGATGTCAGCAGA
GAACATCATGGAGCAGGTGTGAGGTACATTCGCTTGCATATATCTTGTAC
TGGTGCAGAGTCACAGAAAGCCGCAGCAGTAGGTCAAAAGTCCACAAATC
TGGGCCGATGACAGCAAACATCCACTGTTGTACTCGCCACCACAGACGCC
AACCTCCCTACCACGGGCCCTGAGCAGTAGCCAGTGATTCTGTGGCACTG
CTGCGCACTGCTGCGTCTCGCGATAGCTCCTCGCCAGCAGCAAGTACAAG
CAAGCGAACACGTAACATAAGTTTTCTCTACTGATGACGCCCTCGTGGTA
GTGAGGTCCTTTTGGACGTCTCGCGGTTTAAGCTGTTTTGAAATGAAATG
AAAATTGACTGACGGGGGCGCCGAATCTGGGATCTTTGTGGGGTATGTTT
CCCAGCATCGTCAGCACCCCTCGAGGCATGTTTAACTCCACACGATTGAG
TGTGTAGGGATATCCCTAGTAGTCTAGCAGTTTGCCTGATTGGAAGTACT
ACACACGAACGGCAGCGGGCAATCTCTGCACAGCAAGTCGACTTGTTTCG
AACGACCGAAGGCCTGAGCGTCGGTGGAAGCCCCACACGTTCGCTTTGAT
AACGCCTGGAGGTTGATGAACCGCCAGATACGTCGCCGCAACTCAAAATC
TCCATACACCGTAGTTTACGGCCTCATATTCCCTCCTGTCTCTCCACTCG
CCTTGCTGTTGCGACCAACGTTCGGCATTTTTGTAAGCAGGTGATCCAAC
CTCTTCAGGAGCTGAGCGGCTGGAGAAGATGGCAAGGGTGGCACGAGGAA
GCCAACCTTCCTTGGAGGACGAGGTTGCGGTGAAAACAGAGGTGGCCATT
GCCCGCCCGACAGATGTGAAGCAATCGAATCGTGATTTGATGCCCGGTGA
AAGCTGAGTATTCTTTTGGTCGATGCCGACACATGGACCTCGGTTTGCTC
TTGATGCCGCAGATTGCGCAAAGCCAATACGCGGTGACCATCTTTGCTCA
ATATGGTAGGTCCATTGTCGGCTTGTCTTGGTAGTTGTCACTTACACGCC
GTCGGACCTGCACCATCCGCACGGAAATAAGGTATTGCCTCTCATTCCGC
CAGCGCGTTGCTTCCCACGCCTTTGAGTGCACGCGTGAACGCTATGCTTG
GAGTATGACAGCCGGTCGGACGAAGCTTGTTGGTGTAGCGACCTGTGTAT
CCTCAGAACTCGACCGACACATCAACACAGCAGCGCACGCCCACTGCGTC
CCGCCATTTTCGAAGCCATCGAGCTGATGCCCATTGAATCCACCTGGCGT
TTATTTCGGCTCTTGTGCGATAAACCCAGAACATGGTCAGCGAACCCGAT
CGTCGTGCCGAAGAAGACGCGAGCAAGAGCTTCAGCAGGTCGTCACCCCT
GAGTGTGGTTGAGGCGGTTGTTTGGTGGGACGTTGTTGTCAAGTACTCTG
TGGCTGCGAGCCAACGCACACAGGTTCCAACGGGAGTTGCGGCGACGGGG
CTGATTGCAGGGTGCTGCTCCATGCTGTGGACCCTGTGTGGTTCTGCTTC
GATGTCGTTCTCAACCCTGATCTGCAGTTGCCATTCGTTTGGATGGGACA
TCGTTCGCTCCTGTTAAAGAGGTCCGTTGGGTCTGTCGGTAGTCGAAGTT
CCAAGGCTTGGTGTCAGTGTAGCCTTGAGACCTGCACAGGCTGCCTATTT
TGCTAGATTGAAGCCCGCACCACTGAGCGACCGGCATCCTGGAAATCCTT
AGGGCGCACGCGTGGGCTGTAGGCTTTACCGTGAGGCGGGCATGCATGTT
TTACTTCTCTGAACGTTGGGTTGAGTCTGGGTTTCGAGTTGTTGACTGCA
GTATCTGTAGGATTTGTTCGTGGTTGACGAGCATCAGAGAAATGCGACCG
AGAAAAGGAGATTTCTCAACGGCGTTTTGTGTGTATCGGTGACGCCGCTG
AATTGCTCACTCTGCACACAAGTCACACTGAGGTGACTTTGTTTTTATTT
TCTCGTTCGTGCACGCATCTCTAGGTATGTTCGCCGGAGGTTTTACACAT
CTGTCCCCAGTTTTCAGCGTGAGAGATCC back to topCoding sequence (CDS) from alignment at S-firma_F_contig1096:17199..21577+ >mRNA_S-firma_F_contig1096.1275.1 ID=mRNA_S-firma_F_contig1096.1275.1|Name=mRNA_S-firma_F_contig1096.1275.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3936bp|location=Sequence derived from alignment at S-firma_F_contig1096:17199..21577+ (Sphaerotrichia firma ET2_F female) ATGCCCAGACTTTGCGAGCACCGAGAGTGTAGCAAGCAGGCGTCATACGG CATGACCGGCACCAACAAGGCCGAGAAGTGCGCTGAGCACGCGAGGGACG GTATGGTGAACGTCCGCCACAAAACGTGTGCCCAGATCGGTTGCAACAAG ATCCCATCGTACGGCAAGGCCGGCACCACCAAGGCGGAGCTCTGCGCTAA ACACGCCAGGACCGGCATGGTGAACGTCGTCGACAAGAGGTGTAGCCACA TCGGGTGCAACAAGCGGCCATCATACGGCAAGGCCGGCACCACCAAGGCG GAGCTCTGCGCTAAACACGCCAGGACCGGCATGGTGAACGTCGTCGGCAA GACGTGTAGCCACAGTGGGTGCAACAAGCGGCCATCATACGGCAAGGCCG GCACCAACAAGGCGAAGCACTGCGTTGAACACGCCATGGACGGTATGGTG AACGTCGTCAGCAAGAGGTGTGCCCACATCGGGTGCAACAAGATCCCATC GTACGGCCAGGCCGGCACCACCAAGGCGGAGCTCTGCGCTAAACACGCCA GGGACGGTATGGTGAACGTCGTCAGCAAGAGGTGTGGCCACATCGGGTGC AACAAGCAACCAGCATACGAAAAGGCGGGCACCACCAAGGCGGAGCTCTG CGTTGAACACGCCAGAGACGGTATGGTGAACGTCGTCACCAAGAGGTGTG GCCACATCGGTTGCAACAAGATCCCATCGTACGGCAAGGCTGGCACTACC AAGGCGGAGCTCTGCGCTGAACACGCTCGGAACGGCATGGTGAACGTCGT CAACAAGAGGTGTGGCCACATCGGGTGCAACAAGCGGCCATCATACGGCA AGGCAGGCACCACCAAGGCGGAGCTCTGCGTTGGACACGCCAGGACCGGC ATGGTGAACGTCGTCGACAAGAGGTGTAGCCACAGCATGTGCAACAAGCG GCCATCATACGGCAAGGCCGGCACCACCAAGGCGGAGCTCTGCGCTAAAC ACGCCAGGGACGGTATGGTGAACGTCGTTGAGAAGAGGTGTGGCCACATC GGGTGCAACAAGCAACCATCATACGGCAAGGCCGGCACCACCAAGGCGGA GCTCTGCGTTGAACACGCCATGGACGGTATGGTGAACGTCGTCAGCAAGA GGTGTGGCCACATCGGTTGCAACAAGATCCCATCGTACGGCAAGGCTGGC ACCACCGAGGCGGAGCTCTGCGCTGAACACGCTCGGAACGGCATGGTGAA CGTCCGCTACGAAACGTGTGCCCACATCGGTTGCAACGAGATCCCATCAT ACGGCAAGGCTGGAGGGAGTCACAGAAAAGAGTTTTGTTCCCAACATTCC AAGGAAGGTATGACAATCCTGAGAACCCGCCGATCTCGTGGGATGGGAAG GACCAACAGCGGGCATGGGCCAATCGATTCAACTGGAGGCGCCCCCGGTC GTCGTGTTGGTGCATGGGAAAGGCCCAGCGACGGATCTTCTTCGTCCACT CCCAGCGGCGCTGCCTCTGGAGGTACGAGCAAGAGGAACAACAAGCGCCC CCGCGTGAGTATCGCCATGCCTTCAATGTCGGTCGTAGCAGGAGCAGCAG CAAGAGATGGTGGGTCGGCCCCGGCCGCGAAACGACAGGCTTTGGAGCCG GGTGGTGCTGCTGTCAAGGCGGAAGTGACGATGCCGTGCAAGGTGGACAC CTCGGTATCTACAGATGCCCAGACTTTGCGAGCACCGAGAGTGTAGCAAG CAGGCGTCATACGGCATGACCGGCACCAACAAGGCCGAGAAGTGCGCTGA GCACGCGAGGGACGGTATGGTGAACGTCCGCCACAAAACGTGTGCCCAGA TCGGTTGCAACAAGATCCCATCGTACGGCAAGGCCGGCACCACCAAGGCG GAGCTCTGCGCTAAACACGCCAGGACCGGCATGGTGAACGTCGTCGACAA GAGGTGTAGCCACATCGGGTGCAACAAGCGGCCATCATACGGCAAGGCCG GCACCACCAAGGCGGAGCTCTGCGCTAAACACGCCAGGACCGGCATGGTG AACGTCGTCGGCAAGACGTGTAGCCACAGTGGGTGCAACAAGCGGCCATC ATACGGCAAGGCCGGCACCAACAAGGCGAAGCACTGCGTTGAACACGCCA TGGACGGTATGGTGAACGTCGTCAGCAAGAGGTGTGCCCACATCGGGTGC AACAAGATCCCATCGTACGGCCAGGCCGGCACCACCAAGGCGGAGCTCTG CGCTAAACACGCCAGGGACGGTATGGTGAACGTCGTCAGCAAGAGGTGTG GCCACATCGGGTGCAACAAGCAACCAGCATACGAAAAGGCGGGCACCACC AAGGCGGAGCTCTGCGTTGAACACGCCAGAGACGGTATGGTGAACGTCGT CACCAAGAGGTGTGGCCACATCGGTTGCAACAAGATCCCATCGTACGGCA AGGCTGGCACTACCAAGGCGGAGCTCTGCGCTGAACACGCTCGGAACGGC ATGGTGAACGTCGTCAACAAGAGGTGTGGCCACATCGGGTGCAACAAGCG GCCATCATACGGCAAGGCAGGCACCACCAAGGCGGAGCTCTGCGTTGGAC ACGCCAGGACCGGCATGGTGAACGTCGTCGACAAGAGGTGTAGCCACAGC ATGTGCAACAAGCGGCCATCATACGGCAAGGCCGGCACCACCAAGGCGGA GCTCTGCGCTAAACACGCCAGGGACGGTATGGTGAACGTCGTTGAGAAGA GGTGTGGCCACATCGGGTGCAACAAGCAACCATCATACGGCAAGGCCGGC ACCACCAAGGCGGAGCTCTGCGTTGAACACGCCATGGACGGTATGGTGAA CGTCGTCAGCAAGAGGTGTGGCCACATCGGTTGCAACAAGATCCCATCGT ACGGCAAGGCTGGCACCACCGAGGCGGAGCTCTGCGCTGAACACGCTCGG AACGGCATGGTGAACGTCCGCTACGAAACGTGTGCCCACATCGGTTGCAA CGAGATCCCATCATACGGCAAGGCTGGAGGGAGTCACAGAAAAGAGTTTT GTTCCCAACATTCCAAGGAAGGTATGACAATCCTGAGAACCCGCCGATCT CGTGGGATGGGAAGGACCAACAGCGGGCATGGGCCAATCGATTCAACTGG AGGCGCCCCCGGTCGTCGTGTTGGTGCATGGGAAAGGCCCAGCGACGGAT CTTCTTCGTCCACTCCCAGCGGCGCTGCCTCTGGAGGTACGAGCAAGAGG AACAACAAGCGCCCCCGCGTGAGTATCGCCATGCCTTCAATGTCGGTCGT AGCAGGAGCAGCAGCAAGAGATGGTGGGTCGGCCCCGGCCGCGAAACGAC AGGCTTTGGAGCCGGGTGGTGCTGCTGTCAAGGCGGAAGTGACGATGCCG TGCAAGGTGGACACCTCGGTATCTACAGGCCATTTTGTGGGTGTACATGA CGAGGCAGGGGTTGGAGCTTTCTCCCACGTGCCCAGCGATGTCAGCAGAG AACATCATGGAGCAGGCCATTTTGTGGGTGTACATGACGAGGCAGGGGTT GGAGCTTTCTCCCACGTGCCCAGCGATGTCAGCAGAGAACATCATGGAGC AGGTGATCCAACCTCTTCAGGAGCTGAGCGGCTGGAGAAGATGGCAAGGG TGGCACGAGGAAGCCAACCTTCCTTGGAGGACGAGGTTGCGGTGAAAACA GAGGTGGCCATTGCCCGCCCGACAGATGTGAAGCAATCGAATCGTGATTT GATGCCCGGTGAAAGCTGAGTGATCCAACCTCTTCAGGAGCTGAGCGGCT GGAGAAGATGGCAAGGGTGGCACGAGGAAGCCAACCTTCCTTGGAGGACG AGGTTGCGGTGAAAACAGAGGTGGCCATTGCCCGCCCGACAGATGTGAAG CAATCGAATCGTGATTTGATGCCCGGTGAAAGCTGA back to top
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