mRNA_S-firma_F_contig1096.1273.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1096.1273.1
Unique NamemRNA_S-firma_F_contig1096.1273.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1096.1273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1096contigS-firma_F_contig1096:11746..12369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G985
Max annot lvl2880.D7G985|-
Evalue7.06e-05
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Model size626
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.635904-UTR-S-firma_F_contig1096:11745..119371622815640.635904-UTR-S-firma_F_contig1096:11745..11937Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1096 11746..11937 +
1696949472.4667947-UTR-S-firma_F_contig1096:11745..119371696949472.4667947-UTR-S-firma_F_contig1096:11745..11937Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1096 11746..11937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.648317-CDS-S-firma_F_contig1096:11937..123691622815640.648317-CDS-S-firma_F_contig1096:11937..12369Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1096 11938..12369 +
1696949472.4804883-CDS-S-firma_F_contig1096:11937..123691696949472.4804883-CDS-S-firma_F_contig1096:11937..12369Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1096 11938..12369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1096.1273.1prot_S-firma_F_contig1096.1273.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1096 11938..12369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1096.1273.1

>prot_S-firma_F_contig1096.1273.1 ID=prot_S-firma_F_contig1096.1273.1|Name=mRNA_S-firma_F_contig1096.1273.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=144bp
MPRLCEHRECNKRPSYGTTGANKDELCAEHARDGMVNVVSKRCGHIGCNK
QPSHGRAGTIKAELCAEHARNDMENVRHKTCAQIGCNKIPSYGKAGTTKA
ELCAEHARTGMVDVVNKRCSHIGCNKRPSYGKAGTTKAELCAKH
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mRNA from alignment at S-firma_F_contig1096:11746..12369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1096.1273.1 ID=mRNA_S-firma_F_contig1096.1273.1|Name=mRNA_S-firma_F_contig1096.1273.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=624bp|location=Sequence derived from alignment at S-firma_F_contig1096:11746..12369+ (Sphaerotrichia firma ET2_F female)
CCCGCGCTTGACGAGAGTAGAGAACGGGGAGACGAGCCTTCTGGTGTTGT
CTACGGCTGTGATATCGACCACATTTCTGCGGCTTCGGTGGGTGGGATAC
ATATACCCCACGCATCCCGACAGCAGAGAGGGGTTGGTCGCCGCCGGTCC
GTCGGCTGCTCAGGAGAGTCACATACCAGAGAGTAGTGCAGGATGCCCAG
ACTTTGCGAGCACCGAGAGTGTAACAAGCGGCCATCGTACGGCACGACCG
GCGCCAACAAGGACGAGTTGTGCGCTGAGCACGCGAGGGACGGTATGGTG
AACGTCGTCAGCAAGAGGTGTGGCCACATCGGGTGCAACAAGCAACCATC
GCACGGCAGGGCTGGCACCATCAAGGCGGAGCTCTGCGCTGAACACGCTC
GGAACGACATGGAGAACGTCCGCCACAAAACGTGTGCCCAGATCGGTTGC
AACAAGATCCCATCGTACGGCAAGGCCGGCACCACCAAGGCGGAGCTCTG
CGCTGAACACGCCAGGACCGGCATGGTGGACGTCGTCAACAAGAGGTGTA
GCCACATCGGGTGCAACAAGCGGCCATCATACGGCAAGGCCGGCACCACC
AAGGCGGAGCTCTGCGCTAAACAC
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Coding sequence (CDS) from alignment at S-firma_F_contig1096:11746..12369+

>mRNA_S-firma_F_contig1096.1273.1 ID=mRNA_S-firma_F_contig1096.1273.1|Name=mRNA_S-firma_F_contig1096.1273.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=864bp|location=Sequence derived from alignment at S-firma_F_contig1096:11746..12369+ (Sphaerotrichia firma ET2_F female)
ATGCCCAGACTTTGCGAGCACCGAGAGTGTAACAAGCGGCCATCGTACGG
CACGACCGGCGCCAACAAGGACGAGTTGTGCGCTGAGCACGCGAGGGACG
GTATGGTGAACGTCGTCAGCAAGAGGTGTGGCCACATCGGGTGCAACAAG
CAACCATCGCACGGCAGGGCTGGCACCATCAAGGCGGAGCTCTGCGCTGA
ACACGCTCGGAACGACATGGAGAACGTCCGCCACAAAACGTGTGCCCAGA
TCGGTTGCAACAAGATCCCATCGTACGGCAAGGCCGGCACCACCAAGGCG
GAGCTCTGCGCTGAACACGCCAGGACCGGCATGGTGGACGTCGTCAACAA
GAGGTGTAGCCACATCGGGTGCAACAAGCGGCCATCATACGGCAAGGCCG
GCACCACCAAGGCGGAGCTCTGCGCTAAACACATGCCCAGACTTTGCGAG
CACCGAGAGTGTAACAAGCGGCCATCGTACGGCACGACCGGCGCCAACAA
GGACGAGTTGTGCGCTGAGCACGCGAGGGACGGTATGGTGAACGTCGTCA
GCAAGAGGTGTGGCCACATCGGGTGCAACAAGCAACCATCGCACGGCAGG
GCTGGCACCATCAAGGCGGAGCTCTGCGCTGAACACGCTCGGAACGACAT
GGAGAACGTCCGCCACAAAACGTGTGCCCAGATCGGTTGCAACAAGATCC
CATCGTACGGCAAGGCCGGCACCACCAAGGCGGAGCTCTGCGCTGAACAC
GCCAGGACCGGCATGGTGGACGTCGTCAACAAGAGGTGTAGCCACATCGG
GTGCAACAAGCGGCCATCATACGGCAAGGCCGGCACCACCAAGGCGGAGC
TCTGCGCTAAACAC
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