mRNA_S-firma_F_contig1096.1272.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1096.1272.1
Unique NamemRNA_S-firma_F_contig1096.1272.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1096.1272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1096contigS-firma_F_contig1096:8178..8501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.6039228-CDS-S-firma_F_contig1096:8177..85011622815640.6039228-CDS-S-firma_F_contig1096:8177..8501Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1096 8178..8501 +
1696949472.4579456-CDS-S-firma_F_contig1096:8177..85011696949472.4579456-CDS-S-firma_F_contig1096:8177..8501Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1096 8178..8501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1096.1272.1prot_S-firma_F_contig1096.1272.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1096 8178..8501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1096.1272.1

>prot_S-firma_F_contig1096.1272.1 ID=prot_S-firma_F_contig1096.1272.1|Name=mRNA_S-firma_F_contig1096.1272.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=108bp
MGRTTSGHGPIDSTGGVPGRGVGAWERPSDGSSSSTPNGAASGGTSKRSN
KRPRVSIAMPSMSVAAGAAARGSGSAPAAKRQALEPGWCCCQGGSDDVVQ
GGPLGIYR
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mRNA from alignment at S-firma_F_contig1096:8178..8501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1096.1272.1 ID=mRNA_S-firma_F_contig1096.1272.1|Name=mRNA_S-firma_F_contig1096.1272.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=324bp|location=Sequence derived from alignment at S-firma_F_contig1096:8178..8501+ (Sphaerotrichia firma ET2_F female)
ATGGGAAGGACCACCAGCGGGCATGGGCCAATCGATTCAACTGGAGGCGT
CCCCGGTCGTGGTGTTGGTGCATGGGAAAGGCCCAGCGACGGTTCTTCTT
CGTCCACTCCCAACGGCGCTGCCTCTGGAGGTACGAGCAAGAGGAGCAAC
AAGCGCCCCCGCGTGAGTATCGCCATGCCTTCAATGTCGGTCGCAGCAGG
AGCAGCAGCAAGAGGAAGTGGGTCGGCCCCGGCCGCGAAACGACAGGCTT
TGGAGCCGGGGTGGTGCTGCTGTCAAGGCGGAAGTGACGATGTCGTGCAA
GGTGGACCCCTCGGTATCTACAGG
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Coding sequence (CDS) from alignment at S-firma_F_contig1096:8178..8501+

>mRNA_S-firma_F_contig1096.1272.1 ID=mRNA_S-firma_F_contig1096.1272.1|Name=mRNA_S-firma_F_contig1096.1272.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=648bp|location=Sequence derived from alignment at S-firma_F_contig1096:8178..8501+ (Sphaerotrichia firma ET2_F female)
ATGGGAAGGACCACCAGCGGGCATGGGCCAATCGATTCAACTGGAGGCGT
CCCCGGTCGTGGTGTTGGTGCATGGGAAAGGCCCAGCGACGGTTCTTCTT
CGTCCACTCCCAACGGCGCTGCCTCTGGAGGTACGAGCAAGAGGAGCAAC
AAGCGCCCCCGCGTGAGTATCGCCATGCCTTCAATGTCGGTCGCAGCAGG
AGCAGCAGCAAGAGGAAGTGGGTCGGCCCCGGCCGCGAAACGACAGGCTT
TGGAGCCGGGGTGGTGCTGCTGTCAAGGCGGAAGTGACGATGTCGTGCAA
GGTGGACCCCTCGGTATCTACAGGATGGGAAGGACCACCAGCGGGCATGG
GCCAATCGATTCAACTGGAGGCGTCCCCGGTCGTGGTGTTGGTGCATGGG
AAAGGCCCAGCGACGGTTCTTCTTCGTCCACTCCCAACGGCGCTGCCTCT
GGAGGTACGAGCAAGAGGAGCAACAAGCGCCCCCGCGTGAGTATCGCCAT
GCCTTCAATGTCGGTCGCAGCAGGAGCAGCAGCAAGAGGAAGTGGGTCGG
CCCCGGCCGCGAAACGACAGGCTTTGGAGCCGGGGTGGTGCTGCTGTCAA
GGCGGAAGTGACGATGTCGTGCAAGGTGGACCCCTCGGTATCTACAGG
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