mRNA_S-firma_F_contig1096.1271.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1096.1271.1
Unique NamemRNA_S-firma_F_contig1096.1271.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1096.1271.1 vs. uniprot
Match: A0A6H5KGU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU4_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.660e-6
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 3 
Query:  189 RMPQLCEHRGCSKQPSYGMTDTNKAELCAEHARDGMVNVVSK 314
            R    CE  GCS++PSYG  +T KAE CA+H + GMVNV  K
Sbjct:   16 RKQPSCEEVGCSRRPSYGKDNTKKAEFCAQHRQQGMVNVAHK 57
[Close]
BLAST of mRNA_S-firma_F_contig1096.1271.1 vs. uniprot
Match: A0A6H5KW50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW50_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.100e-5
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 3 
Query:  204 CEHRGCSKQPSYGMTDTNKAELCAEHARDGMVNVVSKR 317
            C+  GCSK  S+G+  T  AE CA HA+DGM+NV+SKR
Sbjct:    4 CKQHGCSKVGSFGVQGTRTAEYCATHAKDGMLNVISKR 41
[Close]
BLAST of mRNA_S-firma_F_contig1096.1271.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 4.440e-5
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 3 
Query:  192 MPQLCEHRGCSKQPSYGMTDTNKAELCAEHARDGMV 299
            + + C H GC+K+PSYG   + KAELCA+HA  GMV
Sbjct:    5 VSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
[Close]
BLAST of mRNA_S-firma_F_contig1096.1271.1 vs. uniprot
Match: D8LG50_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG50_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 4.930e-5
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 3 
Query:  192 MPQLCEHRGCSKQPSYGMTDTNKAELCAEHARDGMVNVVSKR 317
            M + C  +GC K+PSYG   + KAE CA+HA D M++V SKR
Sbjct:    1 MVKECCRKGCVKRPSYGKYGSTKAEYCAQHAEDNMIDVRSKR 42
[Close]
BLAST of mRNA_S-firma_F_contig1096.1271.1 vs. uniprot
Match: A0A6H5JW70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW70_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.220e-5
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 3 
Query:  192 MPQLCEHRGCSKQPSYGMTDTNKAELCAEHARDGMVNVVSKR 317
            M + C  +GC K+PSYG   + KAE CA+HA D M++V SKR
Sbjct:    1 MVKECCRKGCVKRPSYGKYGSTKAEYCAQHAEDNMIDVRSKR 42
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1096.1271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KGU4_9PHAE2.660e-654.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW50_9PHAE1.100e-557.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUJ6_ECTSI4.440e-555.56EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LG50_ECTSI4.930e-552.38EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JW70_9PHAE5.220e-552.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1096contigS-firma_F_contig1096:6822..7213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G985
Max annot lvl2880.D7G985|-
Evalue5.57e-05
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size201
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.747912-UTR-S-firma_F_contig1096:6821..70121622815640.747912-UTR-S-firma_F_contig1096:6821..7012Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1096 6822..7012 +
1696949472.5003045-UTR-S-firma_F_contig1096:6821..70121696949472.5003045-UTR-S-firma_F_contig1096:6821..7012Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1096 6822..7012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.7607207-CDS-S-firma_F_contig1096:7012..72131622815640.7607207-CDS-S-firma_F_contig1096:7012..7213Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1096 7013..7213 +
1696949472.5140903-CDS-S-firma_F_contig1096:7012..72131696949472.5140903-CDS-S-firma_F_contig1096:7012..7213Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1096 7013..7213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1096.1271.1prot_S-firma_F_contig1096.1271.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1096 7013..7213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1096.1271.1

>prot_S-firma_F_contig1096.1271.1 ID=prot_S-firma_F_contig1096.1271.1|Name=mRNA_S-firma_F_contig1096.1271.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=67bp
MPQLCEHRGCSKQPSYGMTDTNKAELCAEHARDGMVNVVSKRCGHSGCTT
RPSFGKAGTTKAELCVE
back to top

mRNA from alignment at S-firma_F_contig1096:6822..7213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1096.1271.1 ID=mRNA_S-firma_F_contig1096.1271.1|Name=mRNA_S-firma_F_contig1096.1271.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=392bp|location=Sequence derived from alignment at S-firma_F_contig1096:6822..7213+ (Sphaerotrichia firma ET2_F female)
CCGCGCTTGACGAGAGTAGAGAACGGGGAAACGAGCCTTCTGGTGTTGTC
TACGGCTGTGATATCGACCACATTTCTGCGGCTTCGGTGGGTGGGATACG
TATAACCAAAGCATCCCGACAGCAGAGAGAGGTTGGTAGCCGCCGGTCCG
TCGGCTGCTCAGGAGAGTCACATACCAGAAAGTAGTGCAGGATGCCCCAA
CTTTGCGAGCACCGAGGGTGCAGCAAGCAACCATCATACGGCATGACCGA
TACCAACAAGGCCGAGTTGTGCGCTGAGCACGCGAGGGACGGTATGGTCA
ACGTCGTCAGCAAGAGGTGTGGCCACAGCGGGTGCACCACGCGGCCATCA
TTCGGCAAGGCCGGCACCACCAAGGCCGAGCTCTGCGTTGAA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1096:6822..7213+

>mRNA_S-firma_F_contig1096.1271.1 ID=mRNA_S-firma_F_contig1096.1271.1|Name=mRNA_S-firma_F_contig1096.1271.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=402bp|location=Sequence derived from alignment at S-firma_F_contig1096:6822..7213+ (Sphaerotrichia firma ET2_F female)
ATGCCCCAACTTTGCGAGCACCGAGGGTGCAGCAAGCAACCATCATACGG
CATGACCGATACCAACAAGGCCGAGTTGTGCGCTGAGCACGCGAGGGACG
GTATGGTCAACGTCGTCAGCAAGAGGTGTGGCCACAGCGGGTGCACCACG
CGGCCATCATTCGGCAAGGCCGGCACCACCAAGGCCGAGCTCTGCGTTGA
AATGCCCCAACTTTGCGAGCACCGAGGGTGCAGCAAGCAACCATCATACG
GCATGACCGATACCAACAAGGCCGAGTTGTGCGCTGAGCACGCGAGGGAC
GGTATGGTCAACGTCGTCAGCAAGAGGTGTGGCCACAGCGGGTGCACCAC
GCGGCCATCATTCGGCAAGGCCGGCACCACCAAGGCCGAGCTCTGCGTTG
AA
back to top