mRNA_S-firma_F_contig10952.1265.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10952.1265.1
Unique NamemRNA_S-firma_F_contig10952.1265.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10952.1265.1 vs. uniprot
Match: D8LM66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM66_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 4.710e-65
Identity = 104/130 (80.00%), Postives = 118/130 (90.77%), Query Frame = 3 
Query:    3 WVGRRMQREDLAESNMDLA--DKAFAPATSRYLDACHCLAESTGTQEYARVLSDALALEGGLAVPVAWVKRTLCDVVQAREAHERTSSGGDVWVCVDRLCGMSRELVVVCPASNEADPLHITAEFEVDGA 386
            WVGRR++REDLAESNM+LA  D  FAPAT RYLDACH +AE+TGTQ+YA VL++  ALEGGL VPVAWVKRTL D+VQAR+AHERTSSGGDVWVCVDRLCGMSRELVVVCPA+NEADPLHI+AEFE+D +
Sbjct:   68 WVGRRIKREDLAESNMNLAEADSEFAPATWRYLDACHRMAEATGTQDYAHVLAE--ALEGGLTVPVAWVKRTLGDMVQARQAHERTSSGGDVWVCVDRLCGMSRELVVVCPATNEADPLHISAEFEIDNS 195
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BLAST of mRNA_S-firma_F_contig10952.1265.1 vs. uniprot
Match: A0A6H5KG52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG52_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 5.720e-39
Identity = 100/249 (40.16%), Postives = 113/249 (45.38%), Query Frame = 3 
Query:    3 WVGRRMQREDLAESNMDLAD--KAFAPATSRYLDACHCLAESTGTQEYARVLSDALALEGGLAVPVAWVKRTLCDVVQAREAHE-----------------------------------------------------------------------------------------------------------------------RTSSGGDVWVCVDRLCGMSRELVVVCPASNEADPLHITAEFEVDGA 386
            WV RR+++EDLAESNM+LA+    FAPAT RYLDA H LAE+TGTQ+YA VL +  AL+GGL VPVAWVKRTL D+VQAREAHE                                                                                                                       RTSSGGDVWVCVDRLCGMSRELVVVCPASNE D LHI+AEFE+D +
Sbjct:  124 WVERRIKKEDLAESNMNLAEVGSEFAPATWRYLDASHRLAEATGTQDYAHVLVE--ALQGGLTVPVAWVKRTLGDMVQAREAHEPPWRGASSGDGAKASTRRATSKGLNQEWAQLWKDMGRDIVEIRGERIDVSASGXXXXXXXXXXXXXXXXXXXXXXXGNPEVVLAPLAKEISRAGTEGGIVGLTEVQCFLAARDILLSTKRTSSGGDVWVCVDRLCGMSRELVVVCPASNETDSLHISAEFEIDNS 370
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10952.1265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM66_ECTSI4.710e-6580.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG52_9PHAE5.720e-3940.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10952contigS-firma_F_contig10952:303..2703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog35128.Thaps23120
PFAMsPH
Max annot lvl2836|Bacillariophyta
Evalue8.72e-05
EggNOG OGs2DN4Z@1|root,2S66D@2759|Eukaryota,2XCEI@2836|Bacillariophyta
DescriptionPH domain
COG categoryS
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002650.1
Exons3
Model size386
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10952.1265.1prot_S-firma_F_contig10952.1265.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10952 320..2703 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.0012019-UTR-S-firma_F_contig10952:302..3191622815640.0012019-UTR-S-firma_F_contig10952:302..319Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10952 303..319 +
1696949472.2980723-UTR-S-firma_F_contig10952:302..3191696949472.2980723-UTR-S-firma_F_contig10952:302..319Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10952 303..319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.0156832-CDS-S-firma_F_contig10952:319..4361622815640.0156832-CDS-S-firma_F_contig10952:319..436Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10952 320..436 +
1696949472.3079524-CDS-S-firma_F_contig10952:319..4361696949472.3079524-CDS-S-firma_F_contig10952:319..436Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10952 320..436 +
1622815640.0330813-CDS-S-firma_F_contig10952:1264..13781622815640.0330813-CDS-S-firma_F_contig10952:1264..1378Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10952 1265..1378 +
1696949472.3162942-CDS-S-firma_F_contig10952:1264..13781696949472.3162942-CDS-S-firma_F_contig10952:1264..1378Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10952 1265..1378 +
1622815640.0481179-CDS-S-firma_F_contig10952:2565..27031622815640.0481179-CDS-S-firma_F_contig10952:2565..2703Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10952 2566..2703 +
1696949472.3277152-CDS-S-firma_F_contig10952:2565..27031696949472.3277152-CDS-S-firma_F_contig10952:2565..2703Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10952 2566..2703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10952.1265.1

>prot_S-firma_F_contig10952.1265.1 ID=prot_S-firma_F_contig10952.1265.1|Name=mRNA_S-firma_F_contig10952.1265.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=123bp
MQREDLAESNMDLADKAFAPATSRYLDACHCLAESTGTQEYARVLSDALA
LEGGLAVPVAWVKRTLCDVVQAREAHERTSSGGDVWVCVDRLCGMSRELV
VVCPASNEADPLHITAEFEVDGA
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mRNA from alignment at S-firma_F_contig10952:303..2703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10952.1265.1 ID=mRNA_S-firma_F_contig10952.1265.1|Name=mRNA_S-firma_F_contig10952.1265.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2401bp|location=Sequence derived from alignment at S-firma_F_contig10952:303..2703+ (Sphaerotrichia firma ET2_F female)
GGTGGGTAGGCAGGCGCATGCAGAGGGAAGACCTCGCCGAGAGCAACATG
GACCTCGCGGACAAAGCCTTCGCACCCGCCACCTCGAGGTACCTGGACGC
CTGCCACTGTCTGGCGGAGTCAACGGGGACGCAGGTGGGACGGGACGGCG
GCACCGCGGAGGAAAGGGGATGTTGAGCTATAATAGGTCAATTTTCTCTG
CTTTTTCTCAGGCCTTCGACCCAACTCGGGCAAACAAGACTTGACTTTTT
TGTGTTTTCTGGTGTGATCGTGGGTGCAGAGGGCACGCTTTTACCACCTG
CTTGCGGAAAGGTTCCAAGGCGCGACCCTCGCGGTCGGTGTGTGTGCGTC
AAGAACGAGAACGGTCTTGGACGACCTACGTCGAGGTCGGGTGTTGGTGC
TCATGAGCCCGACACGCTGCTCGTTTTGTGGTAGATAGCTCTCTCCGTTT
CTTTCACTTTTGGGACGTGGTTTTGTGGTCGCTCTCTCCGTTTCTGTCAT
TCTTTGGACGTGGTTTTGTGGTCGCTCGCTCCGTTTCTGTCACTCTTTGG
ACGTGGTTTTGTGGTAGATAGCTCTCTCCGTTTCTGTCACTCTTGGACGT
GGTTTTGTGGTCGCTCTCTCCGTTTCTGTCACTCTTTGGACGTGGTTTTG
TGGTCGCTCTCTTCGTTTCTGTCACTCTTTGGACGTGGTTTTGTGGTCGC
TCTCTCCGTTTCTGTCACTCTTTGGACGTGGTTTTGTGGTCGCTCTCTCC
GTTTCTTTCACTTTTGGGACGTGCCGTTAGCCGTCCGTTTCGCGTGATTA
TGCGGCGAGGGGAGGCTTGTGCTTGTTGTCGCCCTCCACCACAACCATTC
CCCTCCCGACAAGGTAGTTTTCGTGGCTCGTGGTGGTGTTTGGGTGGCGT
AACTCGTGCGTGCGCCATCCGCCATCTACCATCCGCCATCGTGCCGTGCG
CCAACACCCCAGGAGTACGCCCGCGTGCTTTCGGACGCTCTTGCCCTGGA
GGGGGGTCTGGCGGTGCCGGTGGCGTGGGTCAAGAGGACCCTCTGCGACG
TCGTGCAGGCGAGGGAGGCTCACGAGGTTGGTATTTTCTATCTTTGTCTC
TTCGTTGAAAGTAAAGCAATGTACGAGCACTGTTTTACCGGCAGTATTTT
CATGCTTCGCGGTGCATAGCTGTTTGGTCCGGCCCCGCCCCGCGTGATGG
TGGTTTGGAGAATGTAGAGGTGTCGATTTCTGCTGACTGGAAGCGGGCAC
AAGCGAGAAGGGGGGGGAGTATCGGAGGCGAATCGTGTGTGCTCGATTTT
TTAGAGATCGGCACGGAGGAAGCCACAAACGGTTCGGGTGACGGTGTGCG
GGGGCTCGGCGAAAGAACACCACCCGCGGTTGCACGTGCACATACGTGCC
CCCCGAGAGTTGTCTCCCATGCAACATACAACGCGTCACCTCGGCCCACG
TTCCCACCCCCCAAAAACAAAAATAACATTAACGAAAGAGCTCGCGCTGT
AACTCACCCACCCGTGCGCCCCAAAACACCCCTCCGAAATCCAACGCTGC
CCCCCCCCGCCCCCCGCCCACCTCACCCTGAATGCCTCCGATTCATCGAA
GCCTCCATGGCGGGGCACCAGCGCAGGTAGCGGCGGCGGCGGCGGCGGCG
CGGGGAAGCCAGGCAACACAGCAGGGGCGAGCAAAGGCCTGAACCAGGAG
TGGGCGCAGCTCTGGAAGGACATGGGGCGAGACGTCGTCGAGGTCAGGGG
CGAGCGCCTGGACCTCTCCATCTCCGCCACCGGGGCCGCCGGCGCGCCGC
GGGGGGGCACCACGGGGATGGAGGGGGGGGGGGAGGGGGCACGGCCGGGG
CGGCGGGGGGCGACCCTGAGGTGGTGCTGGCGCCTCTCGCGAAGGAGATC
GAGCGCGTCGGGGTGGAGGGCGGGCTATTCGGGCTTTCGGAGGTCCAGTG
CCTCTTGGCGGCGAGGTGGGGACGAACGACTCGTTTCGACGTGGCCTTGT
TTTTTGGGGGAGGTGGGGGATGGGGGTTAGATTGCAGGAGATGTCTGTTT
TCAGCAAGGTGAGGAGGGCGAAGAGACGTCCAACGCAACGGGATCACGCA
CAACATTCGACAGGAGCTTGGGTTGGAACTTTTTCGGTTCACTTCAAAAC
AATTATTTTCCGGGTGTGTTCCAACAACTGCTTTTAGAACCCTCGCCCCC
TCCCGTCCCCCCCGGCCGCCATCAATCCCCGCCGCGTCCAGGGACATCCT
CCTCTCCACAAAGCGCACGTCCAGCGGCGGAGACGTGTGGGTCTGCGTCG
ACCGCCTGTGCGGGATGAGCCGCGAGCTCGTGGTCGTCTGCCCGGCCTCC
AACGAGGCGGACCCGCTGCACATCACGGCGGAGTTCGAGGTCGACGGCGC
C
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Coding sequence (CDS) from alignment at S-firma_F_contig10952:303..2703+

>mRNA_S-firma_F_contig10952.1265.1 ID=mRNA_S-firma_F_contig10952.1265.1|Name=mRNA_S-firma_F_contig10952.1265.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=738bp|location=Sequence derived from alignment at S-firma_F_contig10952:303..2703+ (Sphaerotrichia firma ET2_F female)
ATGCAGAGGGAAGACCTCGCCGAGAGCAACATGGACCTCGCGGACAAAGC
CTTCGCACCCGCCACCTCGAGGTACCTGGACGCCTGCCACTGTCTGGCGG
AGTCAACGGGGACGCAGATGCAGAGGGAAGACCTCGCCGAGAGCAACATG
GACCTCGCGGACAAAGCCTTCGCACCCGCCACCTCGAGGTACCTGGACGC
CTGCCACTGTCTGGCGGAGTCAACGGGGACGCAGGAGTACGCCCGCGTGC
TTTCGGACGCTCTTGCCCTGGAGGGGGGTCTGGCGGTGCCGGTGGCGTGG
GTCAAGAGGACCCTCTGCGACGTCGTGCAGGCGAGGGAGGCTCACGAGGA
GTACGCCCGCGTGCTTTCGGACGCTCTTGCCCTGGAGGGGGGTCTGGCGG
TGCCGGTGGCGTGGGTCAAGAGGACCCTCTGCGACGTCGTGCAGGCGAGG
GAGGCTCACGAGCGCACGTCCAGCGGCGGAGACGTGTGGGTCTGCGTCGA
CCGCCTGTGCGGGATGAGCCGCGAGCTCGTGGTCGTCTGCCCGGCCTCCA
ACGAGGCGGACCCGCTGCACATCACGGCGGAGTTCGAGGTCGACGGCGCC
CGCACGTCCAGCGGCGGAGACGTGTGGGTCTGCGTCGACCGCCTGTGCGG
GATGAGCCGCGAGCTCGTGGTCGTCTGCCCGGCCTCCAACGAGGCGGACC
CGCTGCACATCACGGCGGAGTTCGAGGTCGACGGCGCC
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