mRNA_S-firma_F_contig10951.1264.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10951.1264.1
Unique NamemRNA_S-firma_F_contig10951.1264.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10951.1264.1 vs. uniprot
Match: A0A7S1C9T3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9T3_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.560e-40
Identity = 79/176 (44.89%), Postives = 107/176 (60.80%), Query Frame = 1
Query:    7 PQQFGDLCQTLAKQYFVTAEPTSVLELYLGAFS---------------RAMITNTSITVSRAILSQPPTNPHPNTRSPIQAVLKVFGMESVVLWSALLLKKRVIVYADKFKELQTFMRTLPQFVWHRQDWGILRPWMSGSEAELADLREARVYAVGVTSPEWKSHQDLYDVYVDSA 489
            P++FG L  TLA+ Y  T EPT VLE YL AF+               RA++ NT++ V                      + KVFG E V++W+A++LKKRV+V+ ++  +L   +R LPQ VWHRQDWGILRP ++GS+AELADL +A VY  GVTSPE +S  DL+D++VD A
Sbjct:   97 PERFGSLASTLARAYLATGEPTKVLEGYLQAFTTGKTPGWAAAEHEAKRALVANTALAV----------------------LPKVFGPEVVLIWNAMMLKKRVLVFCERVDDLLPVVRALPQLVWHRQDWGILRPIVTGSDAELADLADAGVYVAGVTSPELRSRPDLWDIFVDVA 250          
BLAST of mRNA_S-firma_F_contig10951.1264.1 vs. uniprot
Match: UPI0006B0ABB6 (protein FAM45A-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0ABB6)

HSP 1 Score: 120 bits (300), Expect = 1.330e-29
Identity = 65/163 (39.88%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    1 FFPQQFGDLCQTLAKQYFVTAEPTSVLELYLGAFSRAMITNTSITVSRAILSQPPTNPHPNTRSPIQAVLKVFGMESVVLWSALLLKKRVIVYADKFKELQTFMRTLPQFVWHRQDWGILRPWMSGSEAELADLREARVYAVGVTSPEWKSHQDLYDVYVDSA 489
            F P+++ +L + L+K Y    +PT++L LYL    R   T      +   LS+          SPI+ V+  FG+ES+++++AL+LKKR+IVY  +   L +FMR LP  VWHRQ+W IL P+M  SE+E A+L   + YA G T    ++  DLYDV+V+ A
Sbjct:   97 FNPEKYVNLSRILSKIYCKMGDPTAILNLYLSVIIRGSCTTEE---NGTFLSREFDQKAAFAASPIRNVINTFGLESILIYTALILKKRIIVYHHELDALLSFMRALPALVWHRQNWNILYPYMELSESECAELISLKTYAAGFTDASVETRTDLYDVFVNLA 256          
BLAST of mRNA_S-firma_F_contig10951.1264.1 vs. uniprot
Match: DEN10_DICDI (DENN domain-containing protein 10 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=DEN10_DICDI)

HSP 1 Score: 111 bits (278), Expect = 2.470e-26
Identity = 60/169 (35.50%), Postives = 97/169 (57.40%), Query Frame = 1
Query:    1 FFPQQFGDLCQTLAKQYFVTAEPTSVLELYLGAFSRAMI--------TNTSITVSRAILSQPPTNPHPNTRSPIQAVLKVFGMESVVLWSALLLKKRVIVYADKFKELQTFMRTLPQFVWHRQDWGILRPWMSGSEAELADLREARVYAVGVTSPEWKSHQDLYDVYVD 483
            F P+++G L Q ++  Y  T + + +LE  L  F+R            ++S  V R+ L           ++ I+ ++++FG E +++WSA+ +KKR++VY++K   L   +R LP FV+HRQ+W ILRP+++ S+ EL DL    VY  G T    KS +DLYD+ VD
Sbjct:  107 FNPEKYGSLAQIMSSVYKQTGDCSKLLECQLRVFNRGQFDVGSMGKFVDSSFDVRRSYL-----------QTSIKDIIQLFGEEIILIWSAMAMKKRIVVYSEKLSSLLKVIRALPLFVFHRQNWNILRPFVTISDLELKDLVSTGVYCAGFTDSSIKSREDLYDILVD 264          
BLAST of mRNA_S-firma_F_contig10951.1264.1 vs. uniprot
Match: A0A210Q369_MIZYE (Protein FAM45A n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q369_MIZYE)

HSP 1 Score: 110 bits (276), Expect = 4.090e-26
Identity = 58/162 (35.80%), Postives = 95/162 (58.64%), Query Frame = 1
Query:    1 FFPQQFGDLCQTLAKQYFVTAEPTSVLELYLGAFSRAMITNTSITVSRAILSQPPTNPHPNTRSPIQAVLKVFGMESVVLWSALLLKKRVIVY--ADKFKELQTFMRTLPQFVWHRQDWGILRPWMSGSEAELADLREARVYAVGVTSPEWKSHQDLYDVYV 480
            F P+++ +LC+ L+ +Y  +  P S+LE YL  F+R    + S   +    ++   N     RS ++ +++ FGM +V++++AL+LKKR+ VY   D+  +L  F+R+LP  VWHRQ+W I  P++  ++ EL  L+ A  Y  G T    +   DLYDVYV
Sbjct:   94 FNPEKYKELCKILSNKYQTSGNPASMLECYLSVFTRG---SCSTDENGRFSAREYDNKKAYLRSELRGIIETFGMSTVIIYTALMLKKRIAVYYPPDQIHQLLMFVRSLPALVWHRQNWNIAFPFLELNQQELDMLKGANCYVAGFTDASLEGRNDLYDVYV 252          
BLAST of mRNA_S-firma_F_contig10951.1264.1 vs. uniprot
Match: F1A0B3_DICPU (UDENN domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A0B3_DICPU)

HSP 1 Score: 110 bits (276), Expect = 4.810e-26
Identity = 61/169 (36.09%), Postives = 98/169 (57.99%), Query Frame = 1
Query:    1 FFPQQFGDLCQTLAKQYFVTAEPTSVLELYLGAFSRAMI--------TNTSITVSRAILSQPPTNPHPNTRSPIQAVLKVFGMESVVLWSALLLKKRVIVYADKFKELQTFMRTLPQFVWHRQDWGILRPWMSGSEAELADLREARVYAVGVTSPEWKSHQDLYDVYVD 483
            F P+++G L Q ++  Y +T + + +LE  L  F+R            +++  V R+ LS   TN        I+ V+++FG E +++WSA+ +KKR+ VY++K   L   +R  P FV+HRQ+W ILRP+++ ++ EL DL    VY  G T P  KS ++LYD+ VD
Sbjct:  106 FNPEKYGSLAQIMSNVYKMTGDCSKLLECQLRVFNRGQFDVGAMGKFVDSNFDVRRSYLS---TN--------IKDVIQLFGEEIILVWSAMAMKKRIAVYSEKLASLLKVIRAFPLFVFHRQNWNILRPYVTINDVELKDLTTTGVYVAGFTDPSIKSREELYDILVD 263          
BLAST of mRNA_S-firma_F_contig10951.1264.1 vs. uniprot
Match: F4QBE3_CAVFA (FAM45 family protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QBE3_CAVFA)

HSP 1 Score: 110 bits (275), Expect = 6.420e-26
Identity = 55/167 (32.93%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    7 PQQFGDLCQTLAKQYFVTAEPTSVLELYLGAFSRAMI--------TNTSITVSRAILSQPPTNPHPNTRSPIQAVLKVFGMESVVLWSALLLKKRVIVYADKFKELQTFMRTLPQFVWHRQDWGILRPWMSGSEAELADLREARVYAVGVTSPEWKSHQDLYDVYVD 483
            P+++G L Q ++  Y  T +P+ +LE +L A +R            +    + R+ L+           + I+ ++K+F  +S+++W+A++LKKR+++Y+DK   L   +R  P FV+HRQ+W +LRP+++  E E+ +L    VY  G T P  KS +DLYD+ VD
Sbjct:  103 PEKYGTLAQIMSNIYLKTGDPSKLLECHLRAVNRGQFDVGALGKFVDADYDIRRSYLA-----------TSIKDIIKLFDEQSILIWNAMMLKKRIVIYSDKISPLLKVIRGFPLFVFHRQNWSLLRPYVTVDEDEIKELVNNGVYVAGFTDPSIKSREDLYDLLVD 258          
BLAST of mRNA_S-firma_F_contig10951.1264.1 vs. uniprot
Match: UPI000644E254 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E254)

HSP 1 Score: 109 bits (273), Expect = 1.180e-25
Identity = 57/169 (33.73%), Postives = 97/169 (57.40%), Query Frame = 1
Query:    1 FFPQQFGDLCQTLAKQYFVTAEPTSVLELYLGAFSRAMI--------TNTSITVSRAILSQPPTNPHPNTRSPIQAVLKVFGMESVVLWSALLLKKRVIVYADKFKELQTFMRTLPQFVWHRQDWGILRPWMSGSEAELADLREARVYAVGVTSPEWKSHQDLYDVYVD 483
            F P+++  L Q ++  Y    +P+ +LE  L A +R M          +    V R+ L+           + I+ V+++FG E +++W+A+++KKR+++Y+DK   L   +R +P FV+HRQ+W +LRP+++  E+EL DL  A VY  G T    KS ++LYD+ VD
Sbjct:  101 FNPEKYAALSQIMSNIYLKLGDPSKLLECQLRALNRGMFDVGPLGKFVDADYDVRRSYLA-----------TSIKDVIRLFGEEIILVWTAMMIKKRIVIYSDKLTSLLKVIRAIPLFVFHRQNWSLLRPFVTLDESELKDLTTAGVYVAGFTDASIKSREELYDILVD 258          
BLAST of mRNA_S-firma_F_contig10951.1264.1 vs. uniprot
Match: UPI001CF3259C (DENN domain-containing protein 10-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF3259C)

HSP 1 Score: 108 bits (271), Expect = 2.010e-25
Identity = 57/163 (34.97%), Postives = 95/163 (58.28%), Query Frame = 1
Query:    1 FFPQQFGDLCQTLAKQYFVTAEPTSVLELYLGAFSRAMITNTSITVSRAILSQPPTNPHPNTRSPIQAVLKVFGMESVVLWSALLLKKRVIVYADKFKELQTFMRTLPQFVWHRQDWGILRPWMSGSEAELADLREARVYAVGVTSPEWKSHQDLYDVYVDSA 489
            F P+++ DLC+ +  ++  + + +S+LELYL   ++   +N  +  S  +    P   +    SPI  V+ +FG+E++++++ALLLKK+V+VY+ K   L    R LPQ VWHRQ+W IL P++   + EL  L     Y  G T    +S  +LYD++V+ A
Sbjct:   92 FCPEKYKDLCKIMINKFNKSGDASSMLELYLSVITKGSCSN-GVDESLVVEDFDPRMSY--VTSPISDVINIFGVETILIYTALLLKKKVVVYSPKIDTLLEISRALPQLVWHRQNWSILYPYVHLEDEELEKLSSCVTYIAGFTDASVESKTELYDLFVNVA 251          
BLAST of mRNA_S-firma_F_contig10951.1264.1 vs. uniprot
Match: UPI001E1DF573 (DENN domain-containing protein 10-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF573)

HSP 1 Score: 108 bits (270), Expect = 2.770e-25
Identity = 57/163 (34.97%), Postives = 95/163 (58.28%), Query Frame = 1
Query:    1 FFPQQFGDLCQTLAKQYFVTAEPTSVLELYLGAFSRAMITNTSITVSRAILSQPPTNPHPNTRSPIQAVLKVFGMESVVLWSALLLKKRVIVY--ADKFKELQTFMRTLPQFVWHRQDWGILRPWMSGSEAELADLREARVYAVGVTSPEWKSHQDLYDVYVD 483
            F P+++  LCQ L ++Y  T  PTS+LE+YL   ++    +     +    +Q     H    S +  +++VFG+E++++++ALLLKKR+ VY      ++L  F R+LP FVWHRQ+W I+ P++   + E+  L+ +  Y  G T    +S  DLYDV+V+
Sbjct:   92 FNPEKYEALCQILCQRYCKTGSPTSILEVYLAVVTKGKCNSEE---NGKFSTQDYQIKHAYANSNLAGIIEVFGVETILIYTALLLKKRIAVYFPPHSIQDLLQFTRSLPAFVWHRQNWNIVYPYVELVDEEVDQLKTSNHYVAGFTDATIESRSDLYDVFVN 251          
BLAST of mRNA_S-firma_F_contig10951.1264.1 vs. uniprot
Match: UPI000B457D58 (uncharacterized protein LOC110460041 isoform X1 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B457D58)

HSP 1 Score: 110 bits (276), Expect = 3.000e-25
Identity = 58/162 (35.80%), Postives = 95/162 (58.64%), Query Frame = 1
Query:    1 FFPQQFGDLCQTLAKQYFVTAEPTSVLELYLGAFSRAMITNTSITVSRAILSQPPTNPHPNTRSPIQAVLKVFGMESVVLWSALLLKKRVIVY--ADKFKELQTFMRTLPQFVWHRQDWGILRPWMSGSEAELADLREARVYAVGVTSPEWKSHQDLYDVYV 480
            F P+++ +LC+ L+ +Y  +  P S+LE YL  F+R    + S   +    ++   N     RS ++ +++ FGM +V++++AL+LKKR+ VY   D+  +L  F+R+LP  VWHRQ+W I  P++  ++ EL  L+ A  Y  G T    +   DLYDVYV
Sbjct:  369 FNPEKYKELCKILSNKYQTSGNPASMLECYLSVFTRG---SCSTDENGRFSAREYDNKKAYLRSELRGIIETFGMSTVIIYTALMLKKRIAVYYPPDQIHQLLMFVRSLPALVWHRQNWNIAFPFLELNQQELDMLKGANCYVAGFTDASLEGRNDLYDVYV 527          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10951.1264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C9T3_9STRA3.560e-4044.89Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
UPI0006B0ABB61.330e-2939.88protein FAM45A-like n=1 Tax=Limulus polyphemus Tax... [more]
DEN10_DICDI2.470e-2635.50DENN domain-containing protein 10 n=1 Tax=Dictyost... [more]
A0A210Q369_MIZYE4.090e-2635.80Protein FAM45A n=2 Tax=Mizuhopecten yessoensis Tax... [more]
F1A0B3_DICPU4.810e-2636.09UDENN domain-containing protein n=1 Tax=Dictyostel... [more]
F4QBE3_CAVFA6.420e-2632.93FAM45 family protein n=1 Tax=Cavenderia fasciculat... [more]
UPI000644E2541.180e-2533.73hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI001CF3259C2.010e-2534.97DENN domain-containing protein 10-like n=2 Tax=Acr... [more]
UPI001E1DF5732.770e-2534.97DENN domain-containing protein 10-like n=1 Tax=Mer... [more]
UPI000B457D583.000e-2535.80uncharacterized protein LOC110460041 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10951contigS-firma_F_contig10951:4126..4671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog44689.DDB0232143
PFAMsSPA
Max annot lvl554915|Amoebozoa
Evalue4.05e-27
EggNOG OGs2CEFC@1|root,2QVHR@2759|Eukaryota,3XAX3@554915|Amoebozoa
DescriptionUncharacterized conserved protein (DUF2347)
COG categoryS
Hectar predicted targeting categoryother localisation
Exons2
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.9095492-CDS-S-firma_F_contig10951:4125..45091622815639.9095492-CDS-S-firma_F_contig10951:4125..4509Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10951 4126..4509 -
1696949472.2696846-CDS-S-firma_F_contig10951:4125..45091696949472.2696846-CDS-S-firma_F_contig10951:4125..4509Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10951 4126..4509 -
1622815639.9248085-CDS-S-firma_F_contig10951:4566..46711622815639.9248085-CDS-S-firma_F_contig10951:4566..4671Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10951 4567..4671 -
1696949472.2804377-CDS-S-firma_F_contig10951:4566..46711696949472.2804377-CDS-S-firma_F_contig10951:4566..4671Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10951 4567..4671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10951.1264.1prot_S-firma_F_contig10951.1264.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10951 4126..4671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10951.1264.1

>prot_S-firma_F_contig10951.1264.1 ID=prot_S-firma_F_contig10951.1264.1|Name=mRNA_S-firma_F_contig10951.1264.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=163bp
FFPQQFGDLCQTLAKQYFVTAEPTSVLELYLGAFSRAMITNTSITVSRAI
LSQPPTNPHPNTRSPIQAVLKVFGMESVVLWSALLLKKRVIVYADKFKEL
QTFMRTLPQFVWHRQDWGILRPWMSGSEAELADLREARVYAVGVTSPEWK
SHQDLYDVYVDSA
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mRNA from alignment at S-firma_F_contig10951:4126..4671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10951.1264.1 ID=mRNA_S-firma_F_contig10951.1264.1|Name=mRNA_S-firma_F_contig10951.1264.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=546bp|location=Sequence derived from alignment at S-firma_F_contig10951:4126..4671- (Sphaerotrichia firma ET2_F female)
TTTTTCCCACAGCAATTTGGTGACCTCTGCCAAACCCTAGCCAAGCAGTA CTTTGTGACTGCGGAGCCCACGTCCGTGCTGGAGCTGTACCTTGGAGCCT TCTCCGTTGGCCGTGTCCGTGGCGGCGAACTCACCTGGACCGCCGCCGAC TACGACACCAAGCGTGCCATGATCACCAACACGTCCATCACTGTGAGCCG CGCCATTCTCTCCCAACCCCCAACCAACCCCCACCCCAACACCCGGTCCC CCATACAGGCCGTCCTGAAGGTGTTTGGTATGGAGTCCGTCGTGCTGTGG TCTGCCCTCCTCCTCAAGAAGCGCGTCATTGTGTACGCGGACAAGTTCAA GGAGCTGCAGACGTTTATGCGGACGCTGCCACAGTTTGTGTGGCACCGCC AGGACTGGGGCATCCTGCGGCCGTGGATGTCGGGGAGCGAGGCAGAGCTG GCCGACCTGCGGGAGGCGCGCGTGTACGCCGTGGGCGTCACCTCCCCAGA GTGGAAGTCACACCAGGACCTGTACGACGTTTACGTGGACAGTGCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10951:4126..4671-

>mRNA_S-firma_F_contig10951.1264.1 ID=mRNA_S-firma_F_contig10951.1264.1|Name=mRNA_S-firma_F_contig10951.1264.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=978bp|location=Sequence derived from alignment at S-firma_F_contig10951:4126..4671- (Sphaerotrichia firma ET2_F female)
TTTTTCCCACAGCAATTTGGTGACCTCTGCCAAACCCTAGCCAAGCAGTA
CTTTGTGACTGCGGAGCCCACGTCCGTGCTGGAGCTGTACCTTGGAGCCT
TCTCCTTTTTCCCACAGCAATTTGGTGACCTCTGCCAAACCCTAGCCAAG
CAGTACTTTGTGACTGCGGAGCCCACGTCCGTGCTGGAGCTGTACCTTGG
AGCCTTCTCCCGTGCCATGATCACCAACACGTCCATCACTGTGAGCCGCG
CCATTCTCTCCCAACCCCCAACCAACCCCCACCCCAACACCCGGTCCCCC
ATACAGGCCGTCCTGAAGGTGTTTGGTATGGAGTCCGTCGTGCTGTGGTC
TGCCCTCCTCCTCAAGAAGCGCGTCATTGTGTACGCGGACAAGTTCAAGG
AGCTGCAGACGTTTATGCGGACGCTGCCACAGTTTGTGTGGCACCGCCAG
GACTGGGGCATCCTGCGGCCGTGGATGTCGGGGAGCGAGGCAGAGCTGGC
CGACCTGCGGGAGGCGCGCGTGTACGCCGTGGGCGTCACCTCCCCAGAGT
GGAAGTCACACCAGGACCTGTACGACGTTTACGTGGACAGTGCGCGTGCC
ATGATCACCAACACGTCCATCACTGTGAGCCGCGCCATTCTCTCCCAACC
CCCAACCAACCCCCACCCCAACACCCGGTCCCCCATACAGGCCGTCCTGA
AGGTGTTTGGTATGGAGTCCGTCGTGCTGTGGTCTGCCCTCCTCCTCAAG
AAGCGCGTCATTGTGTACGCGGACAAGTTCAAGGAGCTGCAGACGTTTAT
GCGGACGCTGCCACAGTTTGTGTGGCACCGCCAGGACTGGGGCATCCTGC
GGCCGTGGATGTCGGGGAGCGAGGCAGAGCTGGCCGACCTGCGGGAGGCG
CGCGTGTACGCCGTGGGCGTCACCTCCCCAGAGTGGAAGTCACACCAGGA
CCTGTACGACGTTTACGTGGACAGTGCG
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