mRNA_S-firma_F_contig1095.1261.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1095.1261.1
Unique NamemRNA_S-firma_F_contig1095.1261.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1095.1261.1 vs. uniprot
Match: A0A6H5JYA6_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYA6_9PHAE)

HSP 1 Score: 408 bits (1048), Expect = 9.210e-136
Identity = 219/265 (82.64%), Postives = 235/265 (88.68%), Query Frame = 3 
Query:  480 TGLTRSGLVKAAGAAVAXXXXXXXXXPASAAAGKEREPEITSKAFIEVRIMEPLNEANGYSSKNAFKGRLVFGVYGKACPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNVINIGGQEELEYGGDVITALPSLLETSPVELPHDRKGLLTRDRLARGPEFGITLGAAPELEGSHEVFGRLLQGDDVLARLEKVPVYGG-NRLKEGSRASEAFKAQNRALVYIGKNLFRDERAVDRTGSLMRRVDILNCGVL 1271
            +GL  +GL  AA     XXXXXX   PASAA     EPE+TSK FIEVRIMEPLNEANGYSSKNAFKGRLVFGVYGK  PKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLN+INIGGQEELEYGG+V+  LPSLLE S    PHDR+GLLTRDRL+RGPEFGITLGAAP L+GSHEVFGRLLQG+DVLARLEKVPVYGG +RL+EGS AS+AFKAQNRALVYIGKN+FRDERAVDRTGSLMRRVDIL+CG+L
Sbjct:   67 SGLMAAGLKAAAAXXXXXXXXXXGVSPASAAGV---EPEVTSKCFIEVRIMEPLNEANGYSSKNAFKGRLVFGVYGKESPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSNNRPHDRRGLLTRDRLSRGPEFGITLGAAPALDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 328
[Close]
BLAST of mRNA_S-firma_F_contig1095.1261.1 vs. uniprot
Match: D8LHC5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHC5_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 4.330e-127
Identity = 189/215 (87.91%), Postives = 204/215 (94.88%), Query Frame = 3 
Query:  630 MEPLNEANGYSSKNAFKGRLVFGVYGKACPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNVINIGGQEELEYGGDVITALPSLLETSPVELPHDRKGLLTRDRLARGPEFGITLGAAPELEGSHEVFGRLLQGDDVLARLEKVPVYGG-NRLKEGSRASEAFKAQNRALVYIGKNLFRDERAVDRTGSLMRRVDILNCGVL 1271
            MEPLNEANGYSSKNAFKGRLVFGVYGK  PKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLN+INIGGQEELEYGG+V+  LPSLLE S  + PHDR+GLLTRDRL+RGPEFG+TLGAAP L+GSHEVFGRLLQG+DVLARLEKVPVYGG +RL+EGS AS+AFKAQNRALVYIGKN+FRDERAVDRTGSLMRRVDIL+CG+L
Sbjct:    1 MEPLNEANGYSSKNAFKGRLVFGVYGKESPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPSLDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 215
[Close]
BLAST of mRNA_S-firma_F_contig1095.1261.1 vs. uniprot
Match: A0A836CET4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET4_9STRA)

HSP 1 Score: 206 bits (524), Expect = 3.130e-59
Identity = 103/215 (47.91%), Postives = 147/215 (68.37%), Query Frame = 3 
Query:  630 MEPLNEANGYSSKNAFKGRLVFGVYGKACPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNVINIGGQEELEYGGDVITALPSLLETSPVELPHDRKGLLTRDRLARGPEFGITLGAAPELEGSHEVFGRLLQGDDVLARLEKVPVYG-GNRLKEGSRASEAFKAQNRALVYIGKNLFRDERAVDRTGSLMRRVDILNCGVL 1271
            MEPL EANGYSS +A  G+LV  ++G   PK  E FL Y+  + ++  PSYAS   T++ PG  L+GG+I+GLN I++ G  +L+Y G +  A PS    +   L HD +GLLT+ +L  GPEF ITLG  PEL+ S+ VFGR+++G++ L  LE+VP+Y  G+  +EGS A   ++AQ  A +++G+N+ RDERAVDRTG+ +RRVD++ CG L
Sbjct:    1 MEPLTEANGYSSASAPTGKLVLELFGTEAPKTVEAFLSYITPEPADSGPSYASSLFTRLVPGRQLDGGRISGLNQISLAGSSQLQYFGRIFPATPSFESNA---LRHDCRGLLTKSKLEAGPEFTITLGPCPELDASNVVFGRVVEGEETLRALEQVPLYSSGSTQEEGSVADNWYRAQRSASLFVGRNVLRDERAVDRTGTFLRRVDVVRCGRL 212
[Close]
BLAST of mRNA_S-firma_F_contig1095.1261.1 vs. uniprot
Match: A0A7S4DA21_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA21_HETAK)

HSP 1 Score: 182 bits (463), Expect = 5.470e-49
Identity = 106/231 (45.89%), Postives = 141/231 (61.04%), Query Frame = 3 
Query:  591 PEITSKAFIEVRIMEPLNEANGYSSKNAFKGRLVFGVYGKACPKAAENFLRYVRA--DRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNVINIGGQEELEYGGDVITALPSLLETSPVELPHDRKGLLTRDRLARGPEFGITLGAAPELE-GSHEVFGRLLQGDDVLARLEKVPVY-GGNRLKEGSRASEAFKAQNRALVYIGKNLFRDERAVDRTGSLMRRVDILNCGVL 1271
            P+IT K F++++I   LNE+N ++S N +KGRLVFG++G+A P++    LRY  A  D     P+YA G          LEGG+I GL  +NI G  + EY G VI   PS  E SP +  H+R+GLLTRD  + GPEFG+TL  APEL+ G   VFG LL+G+DVL  LE VP Y  G+    GS A + ++AQ    +  G+    DERAV +   L+RRVDI  CG+L
Sbjct:   96 PKITHKVFMDIQIASILNESNNFTSYNDYKGRLVFGLWGEAAPRSVRTALRYFDAGPDPEAPGPTYARGAAMTSRGPTLLEGGRIKGLQQVNIAGSLQYEYRGKVIVG-PSAFELSPTK--HNRRGLLTRDSFSTGPEFGVTLADAPELDDGRRVVFGELLEGEDVLQALELVPTYQAGSTQPRGSLADDWYRAQRDFFLRAGQAA-GDERAVGQVNKLLRRVDIKACGML 322
[Close]
BLAST of mRNA_S-firma_F_contig1095.1261.1 vs. uniprot
Match: R1E2A0_EMIHU (PPIase cyclophilin-type domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E2A0_EMIHU)

HSP 1 Score: 169 bits (427), Expect = 3.560e-44
Identity = 96/232 (41.38%), Postives = 139/232 (59.91%), Query Frame = 3 
Query:  597 ITSKAFIEVRIMEPLNEANGYSSKNAFKGRLVFGVYGKACPKAAENFLRYVRAD----RSNGE-PSYASGQLTKMEPGVFLEGGKIAGLNVINIGGQEELEYGGDVITALPSLLETSPVELPHDRKGLLTRDRLARGPEFGITLGAAPELEGSHEVFGRLLQGD-DVLARLEKVPVYGGNRLKE-GSRASEAFKAQNRALVYIGKNLFRDERAVDRTGSLMRRVDILNCGVL 1271
            +T + FI++R++   +  +G     A +GR+ F +YG   PKA E F  +V+ D    RS+ + PSY +G  T + PGV L+GG+I GL +    G ++ EYG  ++  L  ++E +  EL HDR+GL+TR + + GPEFGITLG AP+L+   EV GRL Q    +L  +E +P   G  L+E GS A   F AQ      + K +  D RA DRTG L+RRV+I+NCG+L
Sbjct:   67 VTDRGFIDLRVIRSFDVDSGVLEDAAVRGRVQFELYGNDAPKAVERFKGFVKGDIGQFRSSSDGPSYRTGAFTTLRPGVILQGGRINGLRLTEFAGAQQYEYGSRLVP-LDGVVEVN--ELKHDRRGLITRRQFSAGPEFGITLGPAPQLDSGWEVIGRLSQDSAGLLPLIEGLPYITGRSLEEPGSVADNVFNAQKSLFTSLSKTI-GDSRAEDRTGQLLRRVEIVNCGLL 294
[Close]
BLAST of mRNA_S-firma_F_contig1095.1261.1 vs. uniprot
Match: A0A7S0LLF5_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LLF5_9EUKA)

HSP 1 Score: 167 bits (423), Expect = 1.280e-43
Identity = 97/239 (40.59%), Postives = 142/239 (59.41%), Query Frame = 3 
Query:  588 EPEITSKAFIEVRIM-----EPLNEANGYSSKNAFKGRLVFGVYGKACPKAAENFLRYVRAD-----RSNGEPSYASGQLTKMEPGVFLEGGKIAGLNVINIGGQEELEYGGDVITALPSLLETSPVELPHDRKGLLTRDRLARGPEFGITLGAAPELEGSHEVFGRLLQGDDVLARLEKVPVYGGNRLKE-GSRASEAFKAQNRALVYIGKNLFRDERAVDRTGSLMRRVDILNCGVL 1271
            +P+ T++AF++VRI+     E L +A       A +GR+VF +YG A P+  + F  +++        S   PSY S    ++ PGV +EGG+I GL++    GQ E +Y   ++   P ++E + +   H R+GLLTR  L  GPEFG+TL AAP L+GS EV G L +GD++LA +E +P   G  L+E GS A + F+AQ      + K +  D RA DRTG L+RRV+I NCG+L
Sbjct:   66 QPKATTRAFMDVRIIQRFDVEVLEDA-------AVRGRMVFDLYGDAAPRGTDRFADFIKGSVGQFKGSVDGPSYRSSSFERLRPGVLVEGGRITGLDLTPFAGQLEYQYRSRLLQLRP-VMEVNDIR--HTRRGLLTRRILNSGPEFGVTLAAAPSLDGSWEVIGELQEGDELLALIEGLPFISGKSLEEPGSLADQVFQAQKSLFTSLSKGV-GDPRAADRTGQLLRRVEITNCGLL 293
[Close]
BLAST of mRNA_S-firma_F_contig1095.1261.1 vs. uniprot
Match: A0A0M0K0Y1_9EUKA (Peptidyl-prolyl isomerase g n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0Y1_9EUKA)

HSP 1 Score: 156 bits (394), Expect = 7.910e-40
Identity = 100/240 (41.67%), Postives = 136/240 (56.67%), Query Frame = 3 
Query:  594 EITSKAFIEVRIM-----EPLNEANGYSSKNAFKGRLVFGVYGKACPKAAENFLRYV-----RADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNVINIGGQEELEYGGDVITALPSLLETSPVELPHDRKGLLTRDRLARGPEFGITLGAAPELEGSHEVFGRL---LQGDDVLARLEKVPVYGGNRLK-EGSRASEAFKAQNRALVYIGKNLFRDERAVDRTGSLMRRVDILNCGVL 1271
            ++T+  F+++RI+     E L +A       A + RL FG++G + PK    FL +V     +   S G P+Y+  Q  K++PGV LEGGKIAGL      GQ E EY G ++   P +LE S V   HDR+GLLTR   A GPEFGITL  AP L+G+HEV G+L      + +L  LE +P   G  ++ EG+ A+  F AQ      + K +  D RA DRTG L+RRV+I  CG L
Sbjct:   38 KVTTSCFLDLRIIQSYQVEVLEDA-------ATRARLTFGLFGDSAPKGVAKFLDFVDGTPGQFKASGGGPAYSGAQFEKLQPGVLLEGGKIAGLRQTKFAGQLEYEYLGRLLPLRP-VLEASDVL--HDRRGLLTRSIFAIGPEFGITLAPAPNLDGTHEVIGQLEPNAANEALLTILEGLPYITGKSMEGEGTAANAVFTAQREFFTGLSKAV-GDSRAEDRTGQLLRRVEITKCGRL 266
[Close]
BLAST of mRNA_S-firma_F_contig1095.1261.1 vs. uniprot
Match: W7U5A0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5A0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.880e-38
Identity = 95/230 (41.30%), Postives = 133/230 (57.83%), Query Frame = 3 
Query:  594 EITSKAFIEVRIMEPLNEANGYSSKNAFKGRLVFGVYGKACPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNVINIGGQEELEYGGDVITALPSLLETSPVELPHDRKGLLTRDRL--ARGPEFGITLGAAPELE-GSHEVFGRLLQGDDVLARLEKVPVYGGNRLKEGSRA-SEAFKAQNRALVYIGKNLFRDERAVDRTGSLMRRVDILNCGVL 1271
            EIT+KAF +VRI   +      +S++ F GR+VFG++GKA P     F++Y +A      PSYA   LTK  PGV +E G+I GL  I I G  E EYG  ++ A    ++   + L HDR+GLLT+     A  P F +TLG  P L+ G   VFG LL+G + L  +EKVP+Y      E   A +  F  Q +  + + K+L  DERAV+R GS ++RV++LN G+L
Sbjct:  137 EITAKAFFDVRITGFVTGEEKATSED-FVGRMVFGLFGKAAPIVVGEFIKYTKAPYGGNFPSYAFSSLTKRTPGVSVEAGRIKGLKEIEIAGTREYEYGDQLLGAKG--MDEPTLALKHDRRGLLTKSSTQDAVDPVFEMTLGPQPALDNGDSIVFGILLEGQEALDAMEKVPIYTYESAGEQPEALNSLFTNQKKLFLSMAKSL-NDERAVNRQGSFLKRVEVLNVGLL 362
[Close]
BLAST of mRNA_S-firma_F_contig1095.1261.1 vs. uniprot
Match: A0A7S0JDD1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JDD1_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 9.990e-38
Identity = 84/202 (41.58%), Postives = 122/202 (60.40%), Query Frame = 3 
Query:  684 RLVFGVYGKACPKAAENFLRYVRADRSNGE-----PSYASGQLTKMEPGVFLEGGKIAGLNVINIGGQEELEYGGDVITALPSLLETSPVELPHDRKGLLTRDRLARGPEFGITLGAAPELEGSHEVFGRLLQGDDVLARLEKVPVYGGNRLKE-GSRASEAFKAQNRALVYIGKNLFRDERAVDRTGSLMRRVDILNCGVL 1271
            R+VFG+Y +A P   E F+ +V+      +     PSY S    ++ PGV  EGG+I GL++    GQ E +Y   ++   P +LE +  +L H ++GLLTR  L  GPEFG+TL AAP L+GS EV G L QG ++L  +E++P   G  +++ GS A + F+AQ      + K++  D RA DRTG L+RRV+I NCGV+
Sbjct:    9 RMVFGLYNEAAPLGTERFVNFVQGSVGQFKGTLDGPSYRSSCFERLRPGVVAEGGRITGLDLTPFAGQLEYQYRSRLLPLRP-VLEVN--DLKHSQRGLLTRRILNAGPEFGVTLAAAPSLDGSWEVIGELQQGGELLHLIEELPFITGKSVEQPGSLAEQVFQAQKSVFSSLSKSV-GDSRASDRTGQLLRRVEITNCGVI 206
[Close]
BLAST of mRNA_S-firma_F_contig1095.1261.1 vs. uniprot
Match: A0A4D9DC93_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC93_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.170e-33
Identity = 82/199 (41.21%), Postives = 114/199 (57.29%), Query Frame = 3 
Query:  687 LVFGVYGKACPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNVINIGGQEELEYGGDVITALPSLLETSPVELPHDRKGLLTRDRL--ARGPEFGITLGAAPELE-GSHEVFGRLLQGDDVLARLEKVPVYGGNRLKEGSRA-SEAFKAQNRALVYIGKNLFRDERAVDRTGSLMRRVDILNCGVL 1271
            +VFG++GKA P     F++Y +A      PSYA   LTK  PGV +E G+I GL  I I G  E EYG  ++ A    ++   + L HDR+GLLT+     A  P F +TLG  P L+ G   VFG LL+G + L  +EKVP+Y      E   A +  F  Q +  + + K+L  DERAV+R GS ++RV++LN G+L
Sbjct:    1 MVFGLFGKAAPIVVGEFIKYTKAPYGGNYPSYAFSSLTKRTPGVSVEAGRIKGLKEIEIAGTREYEYGDQLLGAKG--MDEPMLALKHDRRGLLTKSSTQDAVDPVFEMTLGPQPALDNGDSIVFGILLEGQEALDAMEKVPIYTYESAGEQPEALNSLFTNQKKLFLSMAKSL-NDERAVNRQGSFLKRVEVLNVGLL 196
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1095.1261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYA6_9PHAE9.210e-13682.64PPIase cyclophilin-type domain-containing protein ... [more]
D8LHC5_ECTSI4.330e-12787.91Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A836CET4_9STRA3.130e-5947.91Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S4DA21_HETAK5.470e-4945.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
R1E2A0_EMIHU3.560e-4441.38PPIase cyclophilin-type domain-containing protein ... [more]
A0A7S0LLF5_9EUKA1.280e-4340.59Peptidyl-prolyl cis-trans isomerase n=1 Tax=Coccol... [more]
A0A0M0K0Y1_9EUKA7.910e-4041.67Peptidyl-prolyl isomerase g n=1 Tax=Chrysochromuli... [more]
W7U5A0_9STRA5.880e-3841.30Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
A0A7S0JDD1_9EUKA9.990e-3841.58Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A4D9DC93_9STRA1.170e-3341.21PPIase cyclophilin-type domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1095contigS-firma_F_contig1095:18479..23496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LHC5
PFAMsPro_isomerase
Max annot lvl2759|Eukaryota
KEGG koko:K03768
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009579,GO:0009987,GO:0016018,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031977,GO:0032991,GO:0033218,GO:0036211,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044436,GO:0044444,GO:0044464,GO:0044877,GO:0061077,GO:0071704,GO:0140096,GO:1901564
Evalue1.13e-131
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko01000,ko03110
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-24_001370.1
Exons7
Model size1822
Cds size1017
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.6274853-UTR-S-firma_F_contig1095:18478..188741622815639.6274853-UTR-S-firma_F_contig1095:18478..18874Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1095 18479..18874 -
1696949472.0803034-UTR-S-firma_F_contig1095:18478..188741696949472.0803034-UTR-S-firma_F_contig1095:18478..18874Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1095 18479..18874 -
1622815639.6424253-UTR-S-firma_F_contig1095:19033..191851622815639.6424253-UTR-S-firma_F_contig1095:19033..19185Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1095 19034..19185 -
1696949472.1001072-UTR-S-firma_F_contig1095:19033..191851696949472.1001072-UTR-S-firma_F_contig1095:19033..19185Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1095 19034..19185 -
1622815639.7316418-UTR-S-firma_F_contig1095:23239..234961622815639.7316418-UTR-S-firma_F_contig1095:23239..23496Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1095 23240..23496 -
1696949472.1729672-UTR-S-firma_F_contig1095:23239..234961696949472.1729672-UTR-S-firma_F_contig1095:23239..23496Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1095 23240..23496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.654924-CDS-S-firma_F_contig1095:19185..192931622815639.654924-CDS-S-firma_F_contig1095:19185..19293Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 19186..19293 -
1696949472.115818-CDS-S-firma_F_contig1095:19185..192931696949472.115818-CDS-S-firma_F_contig1095:19185..19293Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 19186..19293 -
1622815639.6746175-CDS-S-firma_F_contig1095:20130..202291622815639.6746175-CDS-S-firma_F_contig1095:20130..20229Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 20131..20229 -
1696949472.1254084-CDS-S-firma_F_contig1095:20130..202291696949472.1254084-CDS-S-firma_F_contig1095:20130..20229Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 20131..20229 -
1622815639.6898963-CDS-S-firma_F_contig1095:20704..209351622815639.6898963-CDS-S-firma_F_contig1095:20704..20935Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 20705..20935 -
1696949472.1352818-CDS-S-firma_F_contig1095:20704..209351696949472.1352818-CDS-S-firma_F_contig1095:20704..20935Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 20705..20935 -
1622815639.7009141-CDS-S-firma_F_contig1095:21427..215411622815639.7009141-CDS-S-firma_F_contig1095:21427..21541Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 21428..21541 -
1696949472.144523-CDS-S-firma_F_contig1095:21427..215411696949472.144523-CDS-S-firma_F_contig1095:21427..21541Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 21428..21541 -
1622815639.71172-CDS-S-firma_F_contig1095:22085..221871622815639.71172-CDS-S-firma_F_contig1095:22085..22187Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 22086..22187 -
1696949472.1538284-CDS-S-firma_F_contig1095:22085..221871696949472.1538284-CDS-S-firma_F_contig1095:22085..22187Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 22086..22187 -
1622815639.7218971-CDS-S-firma_F_contig1095:22876..232391622815639.7218971-CDS-S-firma_F_contig1095:22876..23239Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 22877..23239 -
1696949472.163435-CDS-S-firma_F_contig1095:22876..232391696949472.163435-CDS-S-firma_F_contig1095:22876..23239Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1095 22877..23239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1095.1261.1prot_S-firma_F_contig1095.1261.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1095 19186..23239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1095.1261.1

>prot_S-firma_F_contig1095.1261.1 ID=prot_S-firma_F_contig1095.1261.1|Name=mRNA_S-firma_F_contig1095.1261.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=339bp
MRLGALALAAVSAPVGFSGGFLAAPPPPCAALQLHPCVATAIETSVGEAR
SRRGRAVAAQKAHCSSGAGDGGRETGLTRSGLVKAAGAAVAAVALSSTSS
PASAAAGKEREPEITSKAFIEVRIMEPLNEANGYSSKNAFKGRLVFGVYG
KACPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNVI
NIGGQEELEYGGDVITALPSLLETSPVELPHDRKGLLTRDRLARGPEFGI
TLGAAPELEGSHEVFGRLLQGDDVLARLEKVPVYGGNRLKEGSRASEAFK
AQNRALVYIGKNLFRDERAVDRTGSLMRRVDILNCGVL*
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mRNA from alignment at S-firma_F_contig1095:18479..23496-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1095.1261.1 ID=mRNA_S-firma_F_contig1095.1261.1|Name=mRNA_S-firma_F_contig1095.1261.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5018bp|location=Sequence derived from alignment at S-firma_F_contig1095:18479..23496- (Sphaerotrichia firma ET2_F female)
GTTTCACGTTCACGGAACCCCAGGAGGCTCGTCGGTACACCAGCTTCTGA
GCTCTTGTCCTATGGGCCCCCCAAACATGACCCGTTTGCCCGTTCGTTTG
GTTCAGTTTCTTCGGTCGAGAGAGCGTCAGAGGACGCGTTAGGTTAAATG
CTGCAGTGCATCAGAGAGGGAGGGATCACACGCCAGAGCACCGGCACTGC
AGGAGCCACGTCAGAAGAGACGCCCTTTATCTAGGGAGAACTCGGGACCT
CACCATCATGAGGCTTGGTGCCCTGGCATTGGCAGCTGTTAGTGCTCCAG
TCGGCTTCTCCGGGGGCTTCCTTGCGGCGCCGCCACCTCCCTGCGCTGCC
CTACAGCTGCACCCATGCGTTGCAACAGCTATAGAGACATCAGTAGGCGA
GGCACGCTCTAGAAGAGGCCGCGCGGTTGCTGCCCAAAAAGCCCATTGCA
GCAGCGGGGCCGGAGACGGAGGCCGGGAGACCGGCTTGACCCGCTCTGGG
CTCGTGAAGGCGGCCGGAGCGGCCGTGGCTGCAGTGGCCCTCTCCTCCAC
TTCCTCGCCGGCATCTGCAGCAGCCGGAAAAGAGCGGGAGCCGGAGATCA
CTTCGAAAGCTTTCATAGAGGTGTGGCGAGAGCGTTAGGAGCGGAGTATA
TTTCCTCCCTGACGCGGGACTGTACGGAATCGCTGCGTCATGTCATGTGT
TCATGAACGAGTGTCAAGCGCGTGCCCCCCCTGTTGCATTTCTTATTTAC
TGACCGTTTGCCTGCGACCCTGCTGCCGTGGCGGACATTTCCTGGCACGA
TCCGGTTCTTGATGATGCATATCTTATATCTTTTGGTATCTTCGTGTTGG
TAGCATGATCACGTGAAGCGAAAGAAATTCCGGGGTGACTACACCAGTAG
ATGACCAGCCTACCTGCTTGTGGTTCTACATTTTTTTTGGACGCTCGTTG
CGCGTTGTTTAATTGGGACAACGTGATCCACGGGATTACAGCAGTCCTCT
GGCGTCTTATCCAACTACTGTACCCTGTATCTCGACTTTAGCGCCTCGAC
TTTCCACGTTCAACATCCCCACAGCAGATGCTCCCCCGAAAGCGGCCCCT
CAAGCTGGTGGGAACGTTTAACCCGTACCGACAGCACAGCCGTAGTGCCG
TCCGCTTTTTTGTTGAAATCTCAGCCTGACCCGTGACTTTCTTCAACATG
GAGCGTTCTCTTGAGAGGGCCGGTACTGCTGCTGCACCCTTTCTCTCCCG
CCCCACAACCCTACCCCTTGCGCACTTCTCGATTTCTGAACGATTGCTGC
TGCCCGCAGGTAAGAATCATGGAGCCGCTGAACGAGGCGAACGGGTACAG
CAGCAAGAACGCCTTCAAGGGGAGGCTTGTGTTCGGCGTGTACGGCAAGG
CATGCCCAAAGGTGAACCGTTAGAACCGTGTCCTCTTCGCAGCCCCCCCG
CCTCCCCTTGCGCACGCACTGGCTCATTTACTGAGACGCTTTTTTGCCTT
TACATCGGGGCATCAAACCACTGCACAGCAGTGTTAAGTCCTCAGGAGAG
CAGGCTCTGTGATTGGTGCGTAGACCATGGATTTGTTTTTGTTCACGGAC
GCTTCGTACCAAGAGTTTGTTTTCCGGCCAGCCGACCCTTTCCTAGACCC
AAGTGGCCTTGTCTTCCGACTTTGTTTTTTGTCGGTGTGCTCCAAGCCCT
TAATTAAGCACGTCTCGGCATCCAGCTGGCTGTTGACATTGTACACGGAC
ATGAAAGAGAAAGAGAGGGCCCGGAAACAGCACGGCCATGCGTGTGACAC
CCAGACCCCAACATGTGCTTAGGCCTGCGACCACGGGAATCGAATGCGGC
TATGGATCAGTACGGACAAAGGGAGGTACTGGGTGGAGAGACCGGAACGG
TTTCTACTGCTGTGAAGACAGCAACAAATGTGTGTTGACGTGCTTTTGGC
GGCAGGCCGCGGAGAACTTTTTGCGCTACGTGCGGGCAGACCGATCCAAC
GGAGAGCCCTCGTACGCCTCCGGCCAGCTCACCAAGATGGAACCGGGGGT
TTTCCTGGAGGGTGGCAAGGTATGCATGTATCATTTGGAAAGTGTTTCAC
GGAGCCCCCCCTCCTGTTTTTCGACCCAGGCTGCTCTCCGTTGTTGCGAA
GAGGGTCTAGTCACAGTACGATGCTGAGACATTGGCTATATCTGCAATTA
TCTCGAGGATATATTGTACATGGTTTTGTCGCCGCCTTTTTTGTCCAGCG
ACGGGGACTCTCCCCGACCCGCTTGACCAAACAACGAGCGAAAGCTTCCC
CGCTGGGCGTGTGGAAATCTTGAGGGAGACACCCGGCCTGTGGAATTTGC
ATGCAGAGTACGTGTAGTGGAGCGTGTGCCGTGCGGTACAGGATGCCCTC
CCGCACTTCTTTCCCGCACCCTCCGTATCACACCGCCTACGCCGGGAACG
TATGTACGACGACGAAACGGGAGGGAAACCACCACTCCGTTCACGAGTAC
GTCACCCCCCCCCCCCCAACGATGACACTCCCCTCCCCCCGTCGCCCCCG
CTGCCGCCCAGATTGCTGGCTTGAACGTAATCAACATCGGAGGTCAGGAA
GAGCTTGAGTATGGAGGCGACGTGATCACCGCGCTGCCCTCGCTGCTCGA
AACCTCCCCCGTCGAGCTGCCGCACGACCGAAAGGGGCTGCTGACGAGGG
ACAGGCTGGCGAGGGGGCCGGAGTTCGGGATCACGCTGGGAGCGGCGCCG
GAGCTCGAAGGCAGCCACGAGGTTTTTGGGAGACTGTTGCAGGTAATGCT
ACGTCCAATGTAGATGCTTCGAAGTTGTCGTGTGTGTTGGTGCGCTCCGA
AGAGGTGCTCAATACAGAGTTGCAGGCTATTCTGTGTCAAAAGTTGGTAT
GTGGACTGTTCAGGGTCTCGGCTGCGGCATGCTTTGCTCGCCAACGTTTG
CCGCATGTCGATCTGACCTTCCCCCCGGGGGTGTAGAAAGCCGATGTGTC
TGTTCCACAGCCAAGACGCCGACCAACGAAATTGTTTTTTTCTCAAACAG
TTCGTGCATCGCTCGGGAAAAGCAACCTCCCCATTTCGGAGAAAATTGAC
TTCGATAATCCTTTCCACCCCGCGGGGATAATCGTACCTAGGCAACATGC
AGTGTGTGCGCCCGGCATCCCACCCTTTGTTTGTCCATCTTTTCTCTCTC
GAAGACGTCCCATTTTCTCCTTCCCCACCTTTTTTCCGTTTTCAACATTT
GCGCATGACAAGTACAGGGAGACGACGTGCTAGCGAGGCTTGAGAAGGTG
CCCGTCTACGGTGGGAACCGGCTGAAGGAGGGAAGCAGGGCATCCGAGGC
CTTCAAGGCTCAAAACGTGAGTCTGAGCTGTAGAAAAACGCGCGAACTGC
GCTTGGGTGGTGGCAGCAAAGTTGTTCTGTTGAGGCTTTCGCCGGCTCGT
GCTCTCGGAGGCTAGCTGGTTGGGCTAGGAGAGGACAACCCCCGATGCCC
TCGAGACTCCTTGTTGCGAGCTCAAGTCACAAAAATGGCATGGGTCTAGG
ATGGTTTGTTGTTGCCGCTGGTGGCGGCGGTGGTGGTCGTAGTGGTCGTG
GAAGTGTTGGCTTCTGCCGAACCTTTGGTTCATGCTGTTGGGAGTGTGGG
TGAGTGCTACGCCGCGTCGTTTTCGTCGTAGCCCCTCCTTGTTGTCGCTA
GGCTGTTTTCGTTTCCGTGGAACGAGCGGTATTGCGTGTAGCTCAAAAAG
CTTCCCTCTTCTCTCCCTCCCGCACCTCCCCATCCGTGCCCTCTCCCCGC
GGGGCCCCCTCTCGTCTGCTCTGGTGGTGCGTTTGCGTGTGTCCTGCGCG
GATTTTGCCAACCGGTGCCAACTGGGAAAACGAATGCGGCCGTGCAACAC
AAACCGGGCTTCGCTGGAATGCTGCACGTGTGCATCGCTCCCCTGCGTGC
ACCACCTTTGTTGGCACCCCGCTTTGGTCGACGGCGCTGGGAATCACCCG
ATGGATTGGAAAACCCGGGTGGATTGGTTGTCGTTGACGGGTCGTTTGTG
TGCGCATGGCTTGGACACCGCTCTGCCTGTTGGTTGAAATCAACCTATGT
GGGTTCGAATCATCTGGGTGGATTTGACTCTTTTATGGGTCGCTTGTGCA
CGGGTGGCTCGGATATTCATCTGCCTGATGGTTAATGGTTGTGCTGCATG
TAGCGGGCGTTGGTTTACATCGGGAAGAACTTGTTCCGGGATGAGCGAGC
GGTCGACCGGACGGGGTCGCTCATGCGACGAGTCGACATTCTCAACTGCG
GGGTGTTGTAGTATAGCGCATCCCGCGGGGATGTTTGTCATTGGAGTGAT
CTGAGGCATCTAAGTGATGCGTCGCAGAGCACCACTACGTTCGGAAGAAG
ACGCTGCTCACTCCGATTGATTGCGGCTCATGCCGTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTAATATTTTCGAAGTTTTAAGAGGGGGTGATTTGA
TGATGAGCTTNNNNNNNNNNGGGTGTTCTGTGTAGTGCGTCGGCTGGTCC
CACTATTTTTTGTGGATGAGGTTGTTCCTTCCGATTGATGGCGGCTCGTG
CCGTTTTTTTTTTTTTTTTTTTGCTTCGATTTTGAAGCATTGCCGAAGTT
TCAAGAGGGGGAGTAAAAGGGCTATGTTGGCGAAAGGAGACAGCCGTGTG
CCCTAATGGGGTCGGTGTTGCTGAGGCAGCGGTTGCTGCGAAGAGCCGAC
CTTCTCGTCCGGGCGGACCCTTCCGCGATACCAAGCTGACGCTGTGTTGC
CGCCAACAGACAGAACCATTTTTCGCTCAGGATGCTGATGAAACCCTTTG
GGGCCGATTGTTGAAAGCTCTTCGCTCGAGAGCGAGGGGGTGGGGTTTGC
ATCAAGGTGCGAAAGGCAGCGCTTCACCCCTTGGGTCGGTTGTCGAGAGC
TCTTGAGATGCTGCTGCCCTCCTTTCAAGATAAGAAAGCAACGCCGTGAG
AGTCGGAGCTAGTGCGCC
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Coding sequence (CDS) from alignment at S-firma_F_contig1095:18479..23496-

>mRNA_S-firma_F_contig1095.1261.1 ID=mRNA_S-firma_F_contig1095.1261.1|Name=mRNA_S-firma_F_contig1095.1261.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2034bp|location=Sequence derived from alignment at S-firma_F_contig1095:18479..23496- (Sphaerotrichia firma ET2_F female)
ATGAGGCTTGGTGCCCTGGCATTGGCAGCTGTTAGTGCTCCAGTCGGCTT
CTCCGGGGGCTTCCTTGCGGCGCCGCCACCTCCCTGCGCTGCCCTACAGC
TGCACCCATGCGTTGCAACAGCTATAGAGACATCAGTAGGCGAGGCACGC
TCTAGAAGAGGCCGCGCGGTTGCTGCCCAAAAAGCCCATTGCAGCAGCGG
GGCCGGAGACGGAGGCCGGGAGACCGGCTTGACCCGCTCTGGGCTCGTGA
AGGCGGCCGGAGCGGCCGTGGCTGCAGTGGCCCTCTCCTCCACTTCCTCG
CCGGCATCTGCAGCAGCCGGAAAAGAGCGGGAGCCGGAGATCACTTCGAA
AGCTTTCATAGAGATGAGGCTTGGTGCCCTGGCATTGGCAGCTGTTAGTG
CTCCAGTCGGCTTCTCCGGGGGCTTCCTTGCGGCGCCGCCACCTCCCTGC
GCTGCCCTACAGCTGCACCCATGCGTTGCAACAGCTATAGAGACATCAGT
AGGCGAGGCACGCTCTAGAAGAGGCCGCGCGGTTGCTGCCCAAAAAGCCC
ATTGCAGCAGCGGGGCCGGAGACGGAGGCCGGGAGACCGGCTTGACCCGC
TCTGGGCTCGTGAAGGCGGCCGGAGCGGCCGTGGCTGCAGTGGCCCTCTC
CTCCACTTCCTCGCCGGCATCTGCAGCAGCCGGAAAAGAGCGGGAGCCGG
AGATCACTTCGAAAGCTTTCATAGAGGTAAGAATCATGGAGCCGCTGAAC
GAGGCGAACGGGTACAGCAGCAAGAACGCCTTCAAGGGGAGGCTTGTGTT
CGGCGTGTACGGCAAGGCATGCCCAAAGGTAAGAATCATGGAGCCGCTGA
ACGAGGCGAACGGGTACAGCAGCAAGAACGCCTTCAAGGGGAGGCTTGTG
TTCGGCGTGTACGGCAAGGCATGCCCAAAGGCCGCGGAGAACTTTTTGCG
CTACGTGCGGGCAGACCGATCCAACGGAGAGCCCTCGTACGCCTCCGGCC
AGCTCACCAAGATGGAACCGGGGGTTTTCCTGGAGGGTGGCAAGGCCGCG
GAGAACTTTTTGCGCTACGTGCGGGCAGACCGATCCAACGGAGAGCCCTC
GTACGCCTCCGGCCAGCTCACCAAGATGGAACCGGGGGTTTTCCTGGAGG
GTGGCAAGATTGCTGGCTTGAACGTAATCAACATCGGAGGTCAGGAAGAG
CTTGAGTATGGAGGCGACGTGATCACCGCGCTGCCCTCGCTGCTCGAAAC
CTCCCCCGTCGAGCTGCCGCACGACCGAAAGGGGCTGCTGACGAGGGACA
GGCTGGCGAGGGGGCCGGAGTTCGGGATCACGCTGGGAGCGGCGCCGGAG
CTCGAAGGCAGCCACGAGGTTTTTGGGAGACTGTTGCAGATTGCTGGCTT
GAACGTAATCAACATCGGAGGTCAGGAAGAGCTTGAGTATGGAGGCGACG
TGATCACCGCGCTGCCCTCGCTGCTCGAAACCTCCCCCGTCGAGCTGCCG
CACGACCGAAAGGGGCTGCTGACGAGGGACAGGCTGGCGAGGGGGCCGGA
GTTCGGGATCACGCTGGGAGCGGCGCCGGAGCTCGAAGGCAGCCACGAGG
TTTTTGGGAGACTGTTGCAGGGAGACGACGTGCTAGCGAGGCTTGAGAAG
GTGCCCGTCTACGGTGGGAACCGGCTGAAGGAGGGAAGCAGGGCATCCGA
GGCCTTCAAGGCTCAAAACGGAGACGACGTGCTAGCGAGGCTTGAGAAGG
TGCCCGTCTACGGTGGGAACCGGCTGAAGGAGGGAAGCAGGGCATCCGAG
GCCTTCAAGGCTCAAAACCGGGCGTTGGTTTACATCGGGAAGAACTTGTT
CCGGGATGAGCGAGCGGTCGACCGGACGGGGTCGCTCATGCGACGAGTCG
ACATTCTCAACTGCGGGGTGTTGTAGCGGGCGTTGGTTTACATCGGGAAG
AACTTGTTCCGGGATGAGCGAGCGGTCGACCGGACGGGGTCGCTCATGCG
ACGAGTCGACATTCTCAACTGCGGGGTGTTGTAG
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