mRNA_S-firma_F_contig1095.1260.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1095.1260.1 vs. uniprot
Match: A0A7S2G4U7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G4U7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 3.720e-14 Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 2
Query: 1415 YTEKWFRFSSDPPEKIRHSDVPWLPRLSALGGTGKLFAAGGAGAKGGQCERFETLGVNEGDSSDIKKAAVRAASLRWHPDKFMSKYGPRIAPEDRSKIAKDVQATMHRITKLRERL 1762
Y +W F I + D+PW+P L+ +L G E+F+ LG+++ + + KK AVRAASLRWHPDKF +G R+ +DR ++ + V+ RI +L++RL
Sbjct: 8 YALRWTEFLRPSDASISYDDIPWIPVLAET----RLGMDDGV-------EKFDILGISDHATHEEKKQAVRAASLRWHPDKFTQAFGRRLLEKDRGRVMESVKLMSQRINQLKDRL 112
BLAST of mRNA_S-firma_F_contig1095.1260.1 vs. uniprot
Match: D8LIB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB6_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 1.750e-7 Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 1661 MSKYGPRIAPEDRSKIAKDVQATMHRITKLRERLHQQ 1771
MSKY PRIA EDR+ I KDVQATM RITKLRERLH Q
Sbjct: 1 MSKYAPRIAAEDRASIEKDVQATMQRITKLRERLHHQ 37
BLAST of mRNA_S-firma_F_contig1095.1260.1 vs. uniprot
Match: A0A0L0G3X0_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G3X0_9EUKA) HSP 1 Score: 65.5 bits (158), Expect = 2.880e-7 Identity = 40/113 (35.40%), Postives = 55/113 (48.67%), Query Frame = 2
Query: 1424 KWFRFSSDPPEKIRHSDVPWLPRLSALGGTGKLFAAGGAGAKGGQCERFETLGVNEGDSSDIKKAAVRAASLRWHPDKFMSKYGPRIAPEDRSKIAKDVQATMHRITKLRERL 1762
KW FSS I+H +PW P +A G R +T+G K +R A+LRWHPDKF++K+G + P DR+KI + V T H ITK ++ L
Sbjct: 1017 KWEHFSSSFKAPIKHHHIPW-PGPNAPG-----------------LSRQDTVGT--------AKKKIRKATLRWHPDKFIAKFGDALCPIDRTKILEKVNETFHAITKSKQTL 1103
BLAST of mRNA_S-firma_F_contig1095.1260.1 vs. uniprot
Match: E1ZAQ0_CHLVA (NF-kappa-B inhibitor-like protein 1 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZAQ0_CHLVA) HSP 1 Score: 62.0 bits (149), Expect = 1.810e-6 Identity = 39/140 (27.86%), Postives = 66/140 (47.14%), Query Frame = 2
Query: 1361 AQMRSHLEKVRDAAKVRRYTEKWFRFSSDPPEKI-RHSDVPWLPRLSALGGTGKLFAAGGAGAKGGQCERFETLGVNEGDSSDIKKAAVRAASLRWHPDKFMSKYGPRIAPEDRSKIAKDVQATMHRITKLRERLHQQHQ 1777
A R+ + + + AK Y +W FSS PE + + DVPW+ A+G E + + + ++ ++ +R +RWHPDKF+SK+G R+AP DR ++ V A ++T + + Q Q
Sbjct: 294 AAWRAAVAEGQAGAKRASYEARWQFFSSKHPEAVVGYGDVPWI-----------------LAAEGAPQEELQRVVLYGTSGTEEQRRRLRTELIRWHPDKFVSKFGRRLAPADRERVLARVNAVSQQLTAMNAAVQQARQ 416
BLAST of mRNA_S-firma_F_contig1095.1260.1 vs. uniprot
Match: A0A2P6VG47_9CHLO (NF-kappa-B inhibitor-like protein 1 n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VG47_9CHLO) HSP 1 Score: 57.0 bits (136), Expect = 7.110e-5 Identity = 38/126 (30.16%), Postives = 57/126 (45.24%), Query Frame = 2
Query: 1415 YTEKWFRFSSDPPEK-IRHSDVPW-LPRLSALGGTGKLFAAGGAGAKGGQCERFETLGVNEGDSSDIKKAAVRAASLRWHPDKFMSKYGPRIAPEDRSKIAKDVQATMHRITKLRERLHQQHQHHQ 1786
Y +W F+S PE I ++DVPW LP A+ E + + + D + ++ +R +RWHPDKF SK+G R+AP D +I V A + + + QQ Q Q
Sbjct: 316 YEARWQFFASKHPEAVIAYADVPWILP------------------AENAPQEELQRVLLYGADGPEEQRRRLRTELIRWHPDKFQSKFGRRLAPADAERITARVVAVSQMLNAIGAAVQQQRQQQQ 423 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1095.1260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1095.1260.1 >prot_S-firma_F_contig1095.1260.1 ID=prot_S-firma_F_contig1095.1260.1|Name=mRNA_S-firma_F_contig1095.1260.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=596bp MRAAQDWETVSKSMEGVLEQEAKERTLNRDAIATLRRRSMRTSSLSPASIback to top mRNA from alignment at S-firma_F_contig1095:9650..17910+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1095.1260.1 ID=mRNA_S-firma_F_contig1095.1260.1|Name=mRNA_S-firma_F_contig1095.1260.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=8261bp|location=Sequence derived from alignment at S-firma_F_contig1095:9650..17910+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1095:9650..17910+ >mRNA_S-firma_F_contig1095.1260.1 ID=mRNA_S-firma_F_contig1095.1260.1|Name=mRNA_S-firma_F_contig1095.1260.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3576bp|location=Sequence derived from alignment at S-firma_F_contig1095:9650..17910+ (Sphaerotrichia firma ET2_F female)back to top |