mRNA_S-firma_F_contig10945.1254.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10945.1254.1
Unique NamemRNA_S-firma_F_contig10945.1254.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A7S2WMQ0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WMQ0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.420e-24
Identity = 60/131 (45.80%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    1 ARRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRS-STERGMACPCCLMHRRT-TWCVCGPEWN 387
            A R  L  HTDDSEVTLN+CLG E F GG + F+GLR +  EG                 L G  Q  P+VG A+LH G+HLH VT++T G R   I+W RS    R   CPCC ++RR    C+CG  WN
Sbjct:   79 AHRQRLVSHTDDSEVTLNLCLG-EKFEGGALQFRGLRGTSDEGK----------------LLGEFQ--PIVGTALLHAGRHLHEVTQITTGNRYSYIIWARSWKGVRTETCPCCWLNRRKGERCICGKSWN 190          
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: F0YBA3_AURAN (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBA3_AURAN)

HSP 1 Score: 105 bits (263), Expect = 5.900e-24
Identity = 59/133 (44.36%), Postives = 75/133 (56.39%), Query Frame = 1
Query:    7 RSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRS-STERGMACPCCLMHRRTTW-----CVCGPEWN 387
            R +L  HTDDSE+T+N+CLG + F GG +   G+R +P E +  V+                 +VAP  G A +HLG+HLHAV  VT GER +LI W RS S  R   CPCC M+RR        C+CGP WN
Sbjct:  850 RDSLVHHTDDSEITVNICLGRD-FAGGDLLLGGVRGAPDETSARVD-----------------RVAPKRGVATVHLGRHLHAVDTVTRGERRVLICWCRSLSGARSSVCPCCWMNRRAGGASAGDCICGPAWN 964          
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: K0SV59_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SV59_THAOC)

HSP 1 Score: 104 bits (259), Expect = 7.640e-24
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 ARRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRSSTE-RGMACPCCLMHRRT-TWCVCGPEWN 387
            A R  L  HTDDSEVTLN+CLG E F GG V F GLR +  EG +   VG    + RR          P VG A++H G+HLHAV+++T+G+R   I+W RS  + R  +CPCC ++RR  + C+C   WN
Sbjct:  304 ANRHRLVPHTDDSEVTLNLCLGEETFEGGAVEFYGLRGTEEEGEL---VG----KARR----------PDVGTALIHSGRHLHAVSDITSGDRYAYIVWARSWNKLRSRSCPCCYLNRRQDSRCICDKAWN 417          
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A7S2UNT1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNT1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.590e-23
Identity = 60/131 (45.80%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    1 ARRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRS-STERGMACPCCLMHRRT-TWCVCGPEWN 387
            A R  L  HTDDSEVTLN+C+G E F GG + F+GLR +  EG                 L G  Q  P +G A+LH G+HLH VT V +G+R   I+W RS    R  +CPCC ++RR  T C+CGP WN
Sbjct:  335 APRQRLVSHTDDSEVTLNLCIGDE-FEGGALQFRGLRGTDEEGE----------------LLGEFQ--PQLGTALLHAGRHLHEVTNVESGDRYAFIIWARSWKGVRAQSCPCCWLNRRDDTRCICGPSWN 446          
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A1E7FAG7_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAG7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.310e-22
Identity = 56/131 (42.75%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    7 RSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRSSTERGMACPCCLMHRRTTW----CVCGPEWN 387
            R  L  HTDD+EVTLN+CLG + F GG++ F G+R   G+ T    +G               +  P +GRAV+H G+HLH VTE+TAG+R   I W RS       CPCC ++RR       CVCG +WN
Sbjct:  255 RQRLVPHTDDAEVTLNICLGDK-FVGGNLNFWGVR---GDATAGKFLG---------------EYQPEIGRAVIHSGRHLHEVTEITAGDRFAYIQWARSWGASRKNCPCCWLNRRQYQNGDSCVCGQKWN 366          
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: L1JG56_GUITC (Fe2OG dioxygenase domain-containing protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JG56_GUITC)

HSP 1 Score: 98.6 bits (244), Expect = 3.140e-22
Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    4 RRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRSSTERGM---ACPCCLMHRR---TTWCVCGPEWN 387
            RR+ L  HTDDSE+TLNVCL ++ + GG + F G R S GE   E++             T G+  AP  G AVLH+G+ LH V  VT G+R  LI+WTRS   RGM    CPCC ++RR   +  CVCGP+WN
Sbjct:  201 RRNHLVSHTDDSEITLNVCLQSD-YQGGELVFHGRRGS-GE---ELK-------------TLGSFKAPAPGWAVLHVGRQLHEVLPVTGGKRYGLILWTRSM--RGMRSGVCPCCWLNRRHPTSAACVCGPQWN 314          
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A1Z5JHZ3_FISSO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHZ3_FISSO)

HSP 1 Score: 99.4 bits (246), Expect = 5.380e-22
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    7 RSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRSSTE-RGMACPCC-LMHRRTTW-CVCGPEWN 387
            R  L  HTDDSEVTLNVCLG E F GG + F  +R    +  ++ +                 +V P +G  +LH+G+ +H VT +TAG+R   I+WTRS T+ R   CPCC L HR+    C+CGP+WN
Sbjct:  307 RQFLVPHTDDSEVTLNVCLGDEDFEGGLLEFGPMRGQLTKTKIQTD-----------------KVQPRIGYGLLHVGRLMHQVTPITAGDRFAYIVWTRSWTDTRAKQCPCCWLNHRKDAGTCICGPQWN 419          
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A7S2RNQ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNQ7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.290e-21
Identity = 58/151 (38.41%), Postives = 76/151 (50.33%), Query Frame = 1
Query:    1 ARRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRS-STERGMACPCCLMHRRTTW---------------------CVCGPEWN 387
            A R++L  HTDDSEVT+N+CLG + F+GG V   GLR   GE  V+ E                    P VGR ++H+G+ +H VT VT GER  LI+W R+  + R   CPCC M+RR                        C+CGP+WN
Sbjct:  168 ATRTSLVRHTDDSEVTVNLCLGRD-FSGGEVRLLGLR---GEDRVDQE-----------------DYCPEVGRGLVHIGRQIHEVTPVTGGERFALILWARAWGSTRAQVCPCCWMNRRREQGGSDGRASRTASNQECGGSYDCICGPQWN 297          
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A1Z5KB33_FISSO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB33_FISSO)

HSP 1 Score: 97.1 bits (240), Expect = 4.790e-21
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    7 RSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRSSTE-RGMACPCC-LMHRR-TTWCVCGPEWN 387
            R  L  HTDDSEVTLN+CLG + F GG + F  +R    +  ++ +                  V P +G  +LH+G+ +H VT +T+G+R   I+WTRS T+ R   CPCC L HR+ T  C+CGP+WN
Sbjct:  345 RQFLVPHTDDSEVTLNLCLGEKDFEGGLLEFGPMRGERTKTKLQTDT-----------------VQPRIGYGLLHVGRLMHQVTPITSGDRFAYIVWTRSWTDTRAKQCPCCWLNHRKETATCICGPQWN 457          
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A6V2D155_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2D155_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.230e-20
Identity = 53/129 (41.09%), Postives = 71/129 (55.04%), Query Frame = 1
Query:    7 RSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRS-STERGMACPCCLMHRRT-TWCVCGPEWN 387
            R  L  HTDDSEVTLN+C+G + F GG + F GLR +  EG +  E                    PV+G A++H G+HLH VT V +G+R   ++W RS +  R   CPCC ++RR    C+CG  WN
Sbjct:  448 RHQLVSHTDDSEVTLNICVGDQ-FEGGLLRFYGLRGTKEEGQLVGEF------------------EPVIGTALIHAGRHLHEVTTVESGDRYAYVVWARSWNGVRAQTCPCCWLNRRKGEECICGKRWN 557          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WMQ0_9STRA2.420e-2445.80Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
F0YBA3_AURAN5.900e-2444.36Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
K0SV59_THAOC7.640e-2445.80Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2UNT1_9STRA2.590e-2345.80Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1E7FAG7_9STRA2.310e-2242.75Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
L1JG56_GUITC3.140e-2247.01Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A1Z5JHZ3_FISSO5.380e-2242.31Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2RNQ7_9STRA1.290e-2138.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5KB33_FISSO4.790e-2140.77Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6V2D155_9STRA1.230e-2041.09Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10945contigS-firma_F_contig10945:4538..4927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog44056.XP_009037622.1
Preferred nameAPC8
PFAMsANAPC8,TPR_1,TPR_11,TPR_7,TPR_8
Max annot lvl2759|Eukaryota
KEGG koko:K03355
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
GOsGO:0008150,GO:0031347,GO:0048583,GO:0050789,GO:0065007,GO:0080134
Evalue9.67e-25
EggNOG OGsCOG0013@1|root,KOG1971@1|root,KOG1155@2759|Eukaryota,KOG1971@2759|Eukaryota
Descriptionprocollagen-lysine 5-dioxygenase activity
COG categoryM
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.0534728-CDS-S-firma_F_contig10945:4537..49271622815639.0534728-CDS-S-firma_F_contig10945:4537..4927Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10945 4538..4927 -
1696949471.6584306-CDS-S-firma_F_contig10945:4537..49271696949471.6584306-CDS-S-firma_F_contig10945:4537..4927Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10945 4538..4927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10945.1254.1prot_S-firma_F_contig10945.1254.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10945 4538..4927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10945.1254.1

>prot_S-firma_F_contig10945.1254.1 ID=prot_S-firma_F_contig10945.1254.1|Name=mRNA_S-firma_F_contig10945.1254.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=130bp
ARRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVG
VCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWT
RSSTERGMACPCCLMHRRTTWCVCGPEWN*
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mRNA from alignment at S-firma_F_contig10945:4538..4927-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10945.1254.1 ID=mRNA_S-firma_F_contig10945.1254.1|Name=mRNA_S-firma_F_contig10945.1254.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=390bp|location=Sequence derived from alignment at S-firma_F_contig10945:4538..4927- (Sphaerotrichia firma ET2_F female)
GCCAGGCGCAGCGCGCTTCGGGTCCATACCGACGACTCCGAGGTCACCCT CAACGTCTGCCTTGGGACGGAAGGCTTTACGGGGGGCCACGTTTGCTTTC AGGGCCTTCGGTCGTCACCGGGCGAGGGCACGGTGGAAGTCGAGGTGGGG GTGTGTGGTTGCCGTTGCCGCCGTGTTGGCCTCACGGGTGGGGCCCAGGT TGCCCCAGTAGTCGGCCGTGCGGTGCTGCATTTGGGGCAGCACCTCCACG CCGTCACGGAGGTGACTGCCGGCGAGCGCCTAATGCTCATCATGTGGACA CGGTCGTCCACGGAGCGGGGTATGGCATGCCCCTGCTGCTTGATGCACCG CCGGACGACGTGGTGCGTGTGTGGGCCCGAGTGGAATTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10945:4538..4927-

>mRNA_S-firma_F_contig10945.1254.1 ID=mRNA_S-firma_F_contig10945.1254.1|Name=mRNA_S-firma_F_contig10945.1254.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=780bp|location=Sequence derived from alignment at S-firma_F_contig10945:4538..4927- (Sphaerotrichia firma ET2_F female)
GCCAGGCGCAGCGCGCTTCGGGTCCATACCGACGACTCCGAGGTCACCCT
CAACGTCTGCCTTGGGACGGAAGGCTTTACGGGGGGCCACGTTTGCTTTC
AGGGCCTTCGGTCGTCACCGGGCGAGGGCACGGTGGAAGTCGAGGTGGGG
GTGTGTGGTTGCCGTTGCCGCCGTGTTGGCCTCACGGGTGGGGCCCAGGT
TGCCCCAGTAGTCGGCCGTGCGGTGCTGCATTTGGGGCAGCACCTCCACG
CCGTCACGGAGGTGACTGCCGGCGAGCGCCTAATGCTCATCATGTGGACA
CGGTCGTCCACGGAGCGGGGTATGGCATGCCCCTGCTGCTTGATGCACCG
CCGGACGACGTGGTGCGTGTGTGGGCCCGAGTGGAATTAAGCCAGGCGCA
GCGCGCTTCGGGTCCATACCGACGACTCCGAGGTCACCCTCAACGTCTGC
CTTGGGACGGAAGGCTTTACGGGGGGCCACGTTTGCTTTCAGGGCCTTCG
GTCGTCACCGGGCGAGGGCACGGTGGAAGTCGAGGTGGGGGTGTGTGGTT
GCCGTTGCCGCCGTGTTGGCCTCACGGGTGGGGCCCAGGTTGCCCCAGTA
GTCGGCCGTGCGGTGCTGCATTTGGGGCAGCACCTCCACGCCGTCACGGA
GGTGACTGCCGGCGAGCGCCTAATGCTCATCATGTGGACACGGTCGTCCA
CGGAGCGGGGTATGGCATGCCCCTGCTGCTTGATGCACCGCCGGACGACG
TGGTGCGTGTGTGGGCCCGAGTGGAATTAA
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