mRNA_S-firma_F_contig10945.1254.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A7S2WMQ0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WMQ0_9STRA) HSP 1 Score: 101 bits (251), Expect = 2.420e-24 Identity = 60/131 (45.80%), Postives = 73/131 (55.73%), Query Frame = 1
Query: 1 ARRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRS-STERGMACPCCLMHRRT-TWCVCGPEWN 387
A R L HTDDSEVTLN+CLG E F GG + F+GLR + EG L G Q P+VG A+LH G+HLH VT++T G R I+W RS R CPCC ++RR C+CG WN
Sbjct: 79 AHRQRLVSHTDDSEVTLNLCLG-EKFEGGALQFRGLRGTSDEGK----------------LLGEFQ--PIVGTALLHAGRHLHEVTQITTGNRYSYIIWARSWKGVRTETCPCCWLNRRKGERCICGKSWN 190
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: F0YBA3_AURAN (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBA3_AURAN) HSP 1 Score: 105 bits (263), Expect = 5.900e-24 Identity = 59/133 (44.36%), Postives = 75/133 (56.39%), Query Frame = 1
Query: 7 RSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRS-STERGMACPCCLMHRRTTW-----CVCGPEWN 387
R +L HTDDSE+T+N+CLG + F GG + G+R +P E + V+ +VAP G A +HLG+HLHAV VT GER +LI W RS S R CPCC M+RR C+CGP WN
Sbjct: 850 RDSLVHHTDDSEITVNICLGRD-FAGGDLLLGGVRGAPDETSARVD-----------------RVAPKRGVATVHLGRHLHAVDTVTRGERRVLICWCRSLSGARSSVCPCCWMNRRAGGASAGDCICGPAWN 964
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: K0SV59_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SV59_THAOC) HSP 1 Score: 104 bits (259), Expect = 7.640e-24 Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = 1
Query: 1 ARRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRSSTE-RGMACPCCLMHRRT-TWCVCGPEWN 387
A R L HTDDSEVTLN+CLG E F GG V F GLR + EG + VG + RR P VG A++H G+HLHAV+++T+G+R I+W RS + R +CPCC ++RR + C+C WN
Sbjct: 304 ANRHRLVPHTDDSEVTLNLCLGEETFEGGAVEFYGLRGTEEEGEL---VG----KARR----------PDVGTALIHSGRHLHAVSDITSGDRYAYIVWARSWNKLRSRSCPCCYLNRRQDSRCICDKAWN 417
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A7S2UNT1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNT1_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.590e-23 Identity = 60/131 (45.80%), Postives = 75/131 (57.25%), Query Frame = 1
Query: 1 ARRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRS-STERGMACPCCLMHRRT-TWCVCGPEWN 387
A R L HTDDSEVTLN+C+G E F GG + F+GLR + EG L G Q P +G A+LH G+HLH VT V +G+R I+W RS R +CPCC ++RR T C+CGP WN
Sbjct: 335 APRQRLVSHTDDSEVTLNLCIGDE-FEGGALQFRGLRGTDEEGE----------------LLGEFQ--PQLGTALLHAGRHLHEVTNVESGDRYAFIIWARSWKGVRAQSCPCCWLNRRDDTRCICGPSWN 446
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A1E7FAG7_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAG7_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.310e-22 Identity = 56/131 (42.75%), Postives = 73/131 (55.73%), Query Frame = 1
Query: 7 RSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRSSTERGMACPCCLMHRRTTW----CVCGPEWN 387
R L HTDD+EVTLN+CLG + F GG++ F G+R G+ T +G + P +GRAV+H G+HLH VTE+TAG+R I W RS CPCC ++RR CVCG +WN
Sbjct: 255 RQRLVPHTDDAEVTLNICLGDK-FVGGNLNFWGVR---GDATAGKFLG---------------EYQPEIGRAVIHSGRHLHEVTEITAGDRFAYIQWARSWGASRKNCPCCWLNRRQYQNGDSCVCGQKWN 366
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: L1JG56_GUITC (Fe2OG dioxygenase domain-containing protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JG56_GUITC) HSP 1 Score: 98.6 bits (244), Expect = 3.140e-22 Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 4 RRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRSSTERGM---ACPCCLMHRR---TTWCVCGPEWN 387
RR+ L HTDDSE+TLNVCL ++ + GG + F G R S GE E++ T G+ AP G AVLH+G+ LH V VT G+R LI+WTRS RGM CPCC ++RR + CVCGP+WN
Sbjct: 201 RRNHLVSHTDDSEITLNVCLQSD-YQGGELVFHGRRGS-GE---ELK-------------TLGSFKAPAPGWAVLHVGRQLHEVLPVTGGKRYGLILWTRSM--RGMRSGVCPCCWLNRRHPTSAACVCGPQWN 314
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A1Z5JHZ3_FISSO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHZ3_FISSO) HSP 1 Score: 99.4 bits (246), Expect = 5.380e-22 Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 1
Query: 7 RSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRSSTE-RGMACPCC-LMHRRTTW-CVCGPEWN 387
R L HTDDSEVTLNVCLG E F GG + F +R + ++ + +V P +G +LH+G+ +H VT +TAG+R I+WTRS T+ R CPCC L HR+ C+CGP+WN
Sbjct: 307 RQFLVPHTDDSEVTLNVCLGDEDFEGGLLEFGPMRGQLTKTKIQTD-----------------KVQPRIGYGLLHVGRLMHQVTPITAGDRFAYIVWTRSWTDTRAKQCPCCWLNHRKDAGTCICGPQWN 419
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A7S2RNQ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNQ7_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.290e-21 Identity = 58/151 (38.41%), Postives = 76/151 (50.33%), Query Frame = 1
Query: 1 ARRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRS-STERGMACPCCLMHRRTTW---------------------CVCGPEWN 387
A R++L HTDDSEVT+N+CLG + F+GG V GLR GE V+ E P VGR ++H+G+ +H VT VT GER LI+W R+ + R CPCC M+RR C+CGP+WN
Sbjct: 168 ATRTSLVRHTDDSEVTVNLCLGRD-FSGGEVRLLGLR---GEDRVDQE-----------------DYCPEVGRGLVHIGRQIHEVTPVTGGERFALILWARAWGSTRAQVCPCCWMNRRREQGGSDGRASRTASNQECGGSYDCICGPQWN 297
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A1Z5KB33_FISSO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB33_FISSO) HSP 1 Score: 97.1 bits (240), Expect = 4.790e-21 Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 1
Query: 7 RSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRSSTE-RGMACPCC-LMHRR-TTWCVCGPEWN 387
R L HTDDSEVTLN+CLG + F GG + F +R + ++ + V P +G +LH+G+ +H VT +T+G+R I+WTRS T+ R CPCC L HR+ T C+CGP+WN
Sbjct: 345 RQFLVPHTDDSEVTLNLCLGEKDFEGGLLEFGPMRGERTKTKLQTDT-----------------VQPRIGYGLLHVGRLMHQVTPITSGDRFAYIVWTRSWTDTRAKQCPCCWLNHRKETATCICGPQWN 457
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Match: A0A6V2D155_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2D155_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.230e-20 Identity = 53/129 (41.09%), Postives = 71/129 (55.04%), Query Frame = 1
Query: 7 RSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGVCGCRCRRVGLTGGAQVAPVVGRAVLHLGQHLHAVTEVTAGERLMLIMWTRS-STERGMACPCCLMHRRT-TWCVCGPEWN 387
R L HTDDSEVTLN+C+G + F GG + F GLR + EG + E PV+G A++H G+HLH VT V +G+R ++W RS + R CPCC ++RR C+CG WN
Sbjct: 448 RHQLVSHTDDSEVTLNICVGDQ-FEGGLLRFYGLRGTKEEGQLVGEF------------------EPVIGTALIHAGRHLHEVTTVESGDRYAYVVWARSWNGVRAQTCPCCWLNRRKGEECICGKRWN 557 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10945.1254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10945.1254.1 >prot_S-firma_F_contig10945.1254.1 ID=prot_S-firma_F_contig10945.1254.1|Name=mRNA_S-firma_F_contig10945.1254.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=130bp ARRSALRVHTDDSEVTLNVCLGTEGFTGGHVCFQGLRSSPGEGTVEVEVGback to top mRNA from alignment at S-firma_F_contig10945:4538..4927- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10945.1254.1 ID=mRNA_S-firma_F_contig10945.1254.1|Name=mRNA_S-firma_F_contig10945.1254.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=390bp|location=Sequence derived from alignment at S-firma_F_contig10945:4538..4927- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10945:4538..4927- >mRNA_S-firma_F_contig10945.1254.1 ID=mRNA_S-firma_F_contig10945.1254.1|Name=mRNA_S-firma_F_contig10945.1254.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=780bp|location=Sequence derived from alignment at S-firma_F_contig10945:4538..4927- (Sphaerotrichia firma ET2_F female)back to top |