mRNA_S-firma_F_contig10945.1253.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10945.1253.1
Unique NamemRNA_S-firma_F_contig10945.1253.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10945.1253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10945contigS-firma_F_contig10945:3831..4108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.0008495-CDS-S-firma_F_contig10945:3830..39721622815639.0008495-CDS-S-firma_F_contig10945:3830..3972Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10945 3831..3972 +
1696949471.6343548-CDS-S-firma_F_contig10945:3830..39721696949471.6343548-CDS-S-firma_F_contig10945:3830..3972Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10945 3831..3972 +
1622815639.0164316-CDS-S-firma_F_contig10945:4029..41061622815639.0164316-CDS-S-firma_F_contig10945:4029..4106Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10945 4030..4106 +
1696949471.6456194-CDS-S-firma_F_contig10945:4029..41061696949471.6456194-CDS-S-firma_F_contig10945:4029..4106Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10945 4030..4106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10945.1253.1prot_S-firma_F_contig10945.1253.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10945 3831..4106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10945.1253.1

>prot_S-firma_F_contig10945.1253.1 ID=prot_S-firma_F_contig10945.1253.1|Name=mRNA_S-firma_F_contig10945.1253.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=73bp
DPCYQLSGIYLDPAALVEDVDKWISDHVANFTIDWCDGPVADMVIERAGD
RVKRVMVRPVWGTASREIKTGVT
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mRNA from alignment at S-firma_F_contig10945:3831..4108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10945.1253.1 ID=mRNA_S-firma_F_contig10945.1253.1|Name=mRNA_S-firma_F_contig10945.1253.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=278bp|location=Sequence derived from alignment at S-firma_F_contig10945:3831..4108+ (Sphaerotrichia firma ET2_F female)
GATCCCTGCTACCAGCTCTCCGGTATTTACCTGGACCCCGCGGCTTTGGT
GGAGGACGTTGACAAGTGGATCTCTGACCATGTGGCAAACTTCACGATCG
ATTGGTGCGACGGCCCGGTGGCCGATATGGTCATTGAGAGAGGTACGGAC
GGGTTTTGTCACAGCGCCGTCGTTGGGTGGGCTCACACACGGTTTGCAGC
CGGTGACCGTGTCAAGCGCGTGATGGTGCGACCGGTGTGGGGTACCGCCA
GCCGTGAGATCAAGACTGGCGTCACGCT
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Coding sequence (CDS) from alignment at S-firma_F_contig10945:3831..4108+

>mRNA_S-firma_F_contig10945.1253.1 ID=mRNA_S-firma_F_contig10945.1253.1|Name=mRNA_S-firma_F_contig10945.1253.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=438bp|location=Sequence derived from alignment at S-firma_F_contig10945:3831..4108+ (Sphaerotrichia firma ET2_F female)
GATCCCTGCTACCAGCTCTCCGGTATTTACCTGGACCCCGCGGCTTTGGT
GGAGGACGTTGACAAGTGGATCTCTGACCATGTGGCAAACTTCACGATCG
ATTGGTGCGACGGCCCGGTGGCCGATATGGTCATTGAGAGAGGATCCCTG
CTACCAGCTCTCCGGTATTTACCTGGACCCCGCGGCTTTGGTGGAGGACG
TTGACAAGTGGATCTCTGACCATGTGGCAAACTTCACGATCGATTGGTGC
GACGGCCCGGTGGCCGATATGGTCATTGAGAGAGCCGGTGACCGTGTCAA
GCGCGTGATGGTGCGACCGGTGTGGGGTACCGCCAGCCGTGAGATCAAGA
CTGGCGTCACGCCGGTGACCGTGTCAAGCGCGTGATGGTGCGACCGGTGT
GGGGTACCGCCAGCCGTGAGATCAAGACTGGCGTCACG
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