mRNA_S-firma_F_contig10935.1239.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10935.1239.1
Unique NamemRNA_S-firma_F_contig10935.1239.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10935.1239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10935contigS-firma_F_contig10935:374..3007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_000090.1
Exons4
Model size972
Cds size963
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10935.1239.1prot_S-firma_F_contig10935.1239.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10935 374..3000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.7432866-CDS-S-firma_F_contig10935:373..5061622815637.7432866-CDS-S-firma_F_contig10935:373..506Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10935 374..506 -
1696949470.838992-CDS-S-firma_F_contig10935:373..5061696949470.838992-CDS-S-firma_F_contig10935:373..506Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10935 374..506 -
1622815637.7543433-CDS-S-firma_F_contig10935:1057..12701622815637.7543433-CDS-S-firma_F_contig10935:1057..1270Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10935 1058..1270 -
1696949470.8540967-CDS-S-firma_F_contig10935:1057..12701696949470.8540967-CDS-S-firma_F_contig10935:1057..1270Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10935 1058..1270 -
1622815637.7640479-CDS-S-firma_F_contig10935:1772..20701622815637.7640479-CDS-S-firma_F_contig10935:1772..2070Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10935 1773..2070 -
1696949470.8644242-CDS-S-firma_F_contig10935:1772..20701696949470.8644242-CDS-S-firma_F_contig10935:1772..2070Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10935 1773..2070 -
1622815637.7746904-CDS-S-firma_F_contig10935:2681..30001622815637.7746904-CDS-S-firma_F_contig10935:2681..3000Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10935 2682..3000 -
1696949470.8743117-CDS-S-firma_F_contig10935:2681..30001696949470.8743117-CDS-S-firma_F_contig10935:2681..3000Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10935 2682..3000 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.7839499-UTR-S-firma_F_contig10935:3000..30071622815637.7839499-UTR-S-firma_F_contig10935:3000..3007Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10935 3001..3007 -
1696949470.8870528-UTR-S-firma_F_contig10935:3000..30071696949470.8870528-UTR-S-firma_F_contig10935:3000..3007Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10935 3001..3007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10935.1239.1

>prot_S-firma_F_contig10935.1239.1 ID=prot_S-firma_F_contig10935.1239.1|Name=mRNA_S-firma_F_contig10935.1239.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=321bp
MERPRKAQRLSGGSIDGTFSVSSSGGSTDGYGYMDGSAETDQESFSPATT
ALAPAAAAAVAAVAIAGDMDDDDGGSYSGSDMELEGPSGEEDDEEEEEEE
EQDQPQAAPKGKGKRVVNPGDEDSGPELQEEDDFEEESSDDDVQVVDPPA
APPAPAVNHHEEGGAQAEGEDGDITDVEEIDPPAPSVPLADHYHHGEGEG
EGQEDRVADEAESEAGRGGEGQDSDGALNLKAVDGEEMEAEAEAEGGSAA
VEGGIRAAAAEGVKVSEGEETGEEGRSNMDAREVGEGSDEGGVGVSADAV
AEASEETKEEDEQASNFLAKA
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mRNA from alignment at S-firma_F_contig10935:374..3007-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10935.1239.1 ID=mRNA_S-firma_F_contig10935.1239.1|Name=mRNA_S-firma_F_contig10935.1239.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2634bp|location=Sequence derived from alignment at S-firma_F_contig10935:374..3007- (Sphaerotrichia firma ET2_F female)
GCGGAACATGGAACGCCCACGGAAAGCTCAGCGGCTGTCCGGCGGATCCA
TTGATGGAACGTTCAGCGTTAGCAGCAGCGGGGGGTCTACCGACGGGTAT
GGATATATGGACGGGTCTGCGGAAACTGACCAGGAGAGCTTTTCCCCCGC
AACAACGGCACTTGCTCCAGCAGCAGCAGCAGCAGTAGCAGCAGTAGCAA
TAGCCGGTGATATGGATGACGACGATGGTGGCAGTTACAGTGGCAGTGAT
ATGGAGTTAGAGGGGCCGTCGGGAGAGGAGGACGATGAGGAGGAGGAGGA
GGAGGAGGAACAAGACCAGCCCCAAGGTATAAACCATAATATCATATCAT
AGAATAAAGGTAGGACCCGGTACTCAAGCGTTACCCATGTGGACGCCCGT
ACGAGGCAAATTGACCCGACGATGAGTTTCTACATGCCATCTCTCGCTTT
CCGGTGGAGTGATGAAGTCATGATGGGTATTCTCACCGAAGCAAGCAATT
ACTCAAACTGTGCCATGGTACTTTGTACAAACCAACGCAGTTTGTCACAG
ATATTTATAACACAAATCATGACGACCACAATGATCTGTCAACACCGAGC
CCACCTCTAAGTTTCAGGCACAGTTTGCCGATGGCGAGGACCCCAACCAC
ATGCATCTCATAGATCTCGTGGAGAAAAGCATGCGGGAGATAGTCTGCGG
GAGATGGTTGTGGATAGTACAACATGCAGGTCAACTCGACTCGCGAGCTC
GAGGTCAGCCAGTCAAGTCAGCGGCAACGGACGGGCGAGTAGGTCTCTCG
GTCGGTCGTTTGTGGGTATTTAGTGTGCTGAGTTAGGCACCACAACGGTG
GCAAGCACTACTAAAGGCGAAGCATGGCATGGTTGTTGACTTGACATTTG
CTTGCTCGATGCGATGGTCGACGTGCTGAGGCAGCAGCCGCCCCCAAGGG
CAAGGGAAAGCGCGTGGTCAACCCCGGCGACGAAGACAGCGGCCCGGAAC
TGCAGGAAGAGGACGATTTCGAGGAGGAGAGTAGCGACGACGATGTGCAG
GTGGTTGACCCACCTGCCGCCCCACCGGCGCCCGCTGTCAACCACCACGA
GGAGGGGGGGGCGCAGGCGGAGGGGGAGGACGGGGACATTACCGACGTCG
AAGAGATCGACCCGCCTGCACCATCTGTGCCCCTTGCCGACCATTACCAC
CACGGAGAGGGAGAGGGGGAGGGCCAGGAGGATAGGTGACCGTGTAGAAG
TATTCCGCAGTCTTCTTTTTGTTGTTTGCCGCAATCCGGTCTCGGAAACA
GAGTGCTTCCCCTGGTGAGGTGTAATTTAGGTGTGGTTTATGATCTTATG
CATGATACGGTATCGAATGTCGGTAGTGATGTTATCCAACCTATTATGTA
ACGTGGTGTGAAATGTCCTTGACGTGCGGATGAAGCCGTTGCCCTGCGTG
TGATGTCCTTAGTCATTAGTGCAACTGCTGCTCCTAGGTGCAATACGCCT
ATTGTTTCAACAGCGTTTGTTCTTGCGGTTTCCTCGATTAAATTTGCCCG
TTCGGACCTTTCAACAGCAACAGCAACAGTGGGAGAGGGAGAGTGGCTCG
CTTTTTCGCAGGATCGGTTGCGCAGAACCGGCAATGGCGGGGTAAGCCTT
ACCGCCTTCTGTCTTTTCCGTCCCTTGAACGCTTGGTCTTGGTCTTGGTC
TTCCTTGTCTCTCGATTCTTCACCCTGGCGCAAAAAGAGTTGCGGACGAA
GCTGAAAGCGAAGCTGGACGCGGAGGTGAGGGGCAGGACTCAGATGGTGC
CCTCAACCTCAAGGCTGTGGACGGAGAAGAGATGGAGGCAGAGGCAGAGG
CAGAGGGAGGGAGTGCAGCGGTAGAGGGGGGAATTCGAGCAGCAGCAGCA
GAGGGGGTGAAGGTGTCGGAGGGAGAAGAGACCGGCGAGGAAGGTCGAAG
GTGAGGCAAAAAGAGAATTAAAAACGATGCAGGCTTGTGACGCGGGTTTG
AGAGGAGGATGTGTAGGAGTCGCCGGGGCGAGAAGAAGCCGCAATAACTC
CATAAGGAGGAGGGCTTCGTCGAATTTGAGGTTCAGGAAAGTAATTGCAC
TTCGTGCGTTCCGAGTTGAATGCAGTACCCGAGGTTATAGTAGGTCCAGT
ACGTAAACGCGCCGGGTTTTCATGTTTCGCGTTTCATGATGATGTTGTGA
CCCACGAGGAGGAAGACGCAGGCTGTGACCACGAAGGAAACAAAGGAGGC
AGCACGGTAGTACGAGGCCCCCGTTCCTTCCTTTCTTTCCTACTCGGGGG
CGCTTTTCGATACATACAGACTTCCTTTCCTCTCTGCTCAGGGCGATTTT
CGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGG
AGAGAGCTATTGTAATGATGATGCTTTGCGGGATACGTAGTATGCGGCGC
TCATCCCCTCATCCCCGCCGCGTGCCGATTTTCGCCGCGTGGTTTGAGCA
GCAACATGGACGCGCGAGAAGTCGGAGAGGGTTCAGACGAAGGAGGGGTA
GGGGTCAGTGCTGATGCTGTTGCTGAGGCTTCGGAGGAGACGAAAGAAGA
AGACGAGCAAGCATCGAACTTTTTAGCAAAAGCA
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Coding sequence (CDS) from alignment at S-firma_F_contig10935:374..3007-

>mRNA_S-firma_F_contig10935.1239.1 ID=mRNA_S-firma_F_contig10935.1239.1|Name=mRNA_S-firma_F_contig10935.1239.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1926bp|location=Sequence derived from alignment at S-firma_F_contig10935:374..3007- (Sphaerotrichia firma ET2_F female)
ATGGAACGCCCACGGAAAGCTCAGCGGCTGTCCGGCGGATCCATTGATGG
AACGTTCAGCGTTAGCAGCAGCGGGGGGTCTACCGACGGGTATGGATATA
TGGACGGGTCTGCGGAAACTGACCAGGAGAGCTTTTCCCCCGCAACAACG
GCACTTGCTCCAGCAGCAGCAGCAGCAGTAGCAGCAGTAGCAATAGCCGG
TGATATGGATGACGACGATGGTGGCAGTTACAGTGGCAGTGATATGGAGT
TAGAGGGGCCGTCGGGAGAGGAGGACGATGAGGAGGAGGAGGAGGAGGAG
GAACAAGACCAGCCCCAAGATGGAACGCCCACGGAAAGCTCAGCGGCTGT
CCGGCGGATCCATTGATGGAACGTTCAGCGTTAGCAGCAGCGGGGGGTCT
ACCGACGGGTATGGATATATGGACGGGTCTGCGGAAACTGACCAGGAGAG
CTTTTCCCCCGCAACAACGGCACTTGCTCCAGCAGCAGCAGCAGCAGTAG
CAGCAGTAGCAATAGCCGGTGATATGGATGACGACGATGGTGGCAGTTAC
AGTGGCAGTGATATGGAGTTAGAGGGGCCGTCGGGAGAGGAGGACGATGA
GGAGGAGGAGGAGGAGGAGGAACAAGACCAGCCCCAAGCCGCCCCCAAGG
GCAAGGGAAAGCGCGTGGTCAACCCCGGCGACGAAGACAGCGGCCCGGAA
CTGCAGGAAGAGGACGATTTCGAGGAGGAGAGTAGCGACGACGATGTGCA
GGTGGTTGACCCACCTGCCGCCCCACCGGCGCCCGCTGTCAACCACCACG
AGGAGGGGGGGGCGCAGGCGGAGGGGGAGGACGGGGACATTACCGACGTC
GAAGAGATCGACCCGCCTGCACCATCTGTGCCCCTTGCCGACCATTACCA
CCACGGAGAGGGAGAGGGGGAGGGCCAGGAGGATAGCCGCCCCCAAGGGC
AAGGGAAAGCGCGTGGTCAACCCCGGCGACGAAGACAGCGGCCCGGAACT
GCAGGAAGAGGACGATTTCGAGGAGGAGAGTAGCGACGACGATGTGCAGG
TGGTTGACCCACCTGCCGCCCCACCGGCGCCCGCTGTCAACCACCACGAG
GAGGGGGGGGCGCAGGCGGAGGGGGAGGACGGGGACATTACCGACGTCGA
AGAGATCGACCCGCCTGCACCATCTGTGCCCCTTGCCGACCATTACCACC
ACGGAGAGGGAGAGGGGGAGGGCCAGGAGGATAGAGTTGCGGACGAAGCT
GAAAGCGAAGCTGGACGCGGAGGTGAGGGGCAGGACTCAGATGGTGCCCT
CAACCTCAAGGCTGTGGACGGAGAAGAGATGGAGGCAGAGGCAGAGGCAG
AGGGAGGGAGTGCAGCGGTAGAGGGGGGAATTCGAGCAGCAGCAGCAGAG
GGGGTGAAGGTGTCGGAGGGAGAAGAGACCGGCGAGGAAGGTCGAAGAGT
TGCGGACGAAGCTGAAAGCGAAGCTGGACGCGGAGGTGAGGGGCAGGACT
CAGATGGTGCCCTCAACCTCAAGGCTGTGGACGGAGAAGAGATGGAGGCA
GAGGCAGAGGCAGAGGGAGGGAGTGCAGCGGTAGAGGGGGGAATTCGAGC
AGCAGCAGCAGAGGGGGTGAAGGTGTCGGAGGGAGAAGAGACCGGCGAGG
AAGGTCGAAGCAACATGGACGCGCGAGAAGTCGGAGAGGGTTCAGACGAA
GGAGGGGTAGGGGTCAGTGCTGATGCTGTTGCTGAGGCTTCGGAGGAGAC
GAAAGAAGAAGACGAGCAAGCATCGAACTTTTTAGCAAAAGCACAACATG
GACGCGCGAGAAGTCGGAGAGGGTTCAGACGAAGGAGGGGTAGGGGTCAG
TGCTGATGCTGTTGCTGAGGCTTCGGAGGAGACGAAAGAAGAAGACGAGC
AAGCATCGAACTTTTTAGCAAAAGCA
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