mRNA_S-firma_F_contig10932.1238.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: D8LAT3_ECTSI (Bile Acid:Na+ symporter family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT3_ECTSI) HSP 1 Score: 252 bits (643), Expect = 3.140e-79 Identity = 126/172 (73.26%), Postives = 146/172 (84.88%), Query Frame = 2
Query: 2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWDVVVPYCTVGFRSGQYAKKLMDLGYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVEVKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSKVFGKKK 517
GK+V+LVDVRTE+EM+VSML GA+TREEFE+S LG+ RTG KF+E S EGE+AW VV PYCTVGFRSGQYAKKL+DLGYPSV+NSEGVVLWTH+VG+GLVA A+ S G+ G G G GVEVKR+HVFG PWDHAS+DFET+KFTATGW GS+VKSAFSK+F KKK
Sbjct: 63 GKKVLLVDVRTEDEMKVSMLRGALTREEFENSSLGEAARTGKKFRERSGEGEEAWGVVAPYCTVGFRSGQYAKKLVDLGYPSVRNSEGVVLWTHDVGNGLVARAADEVESGGSP--GSGPRNGSGVEVKRLHVFGSPWDHASDDFETIKFTATGWFGSTVKSAFSKMFKKKK 232
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A836CAM6_9STRA (Bile Acid:Na+ symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM6_9STRA) HSP 1 Score: 118 bits (295), Expect = 5.330e-28 Identity = 69/169 (40.83%), Postives = 92/169 (54.44%), Query Frame = 2
Query: 2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWDVVVPYCTVGFRSGQYAKKLMDLGYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVEVKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSKVFG 508
G V+LVDVR EE VSM+ GA++ +EFESSH ++ A VVPYCT+G+RSG YA+KL LGY V+N EG+V+WTH++GSGLV +R G E K VH +G PWD + D+ +V F W+ S + A+ V G
Sbjct: 37 GTPVLLVDVRLPEEQDVSMIEGAISLDEFESSHR----------RDQYGPAALANTTVVPYCTIGYRSGAYARKLKTLGYRHVRNGEGIVMWTHDIGSGLV-----DRD---------------GRETKYVHTYGPPWDLVASDYHSVHFGVWNWIQSHSRGAWRWVTG 175
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A813CHA3_9DINO (Hypothetical protein (Fragment) n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CHA3_9DINO) HSP 1 Score: 116 bits (291), Expect = 9.030e-27 Identity = 80/175 (45.71%), Postives = 103/175 (58.86%), Query Frame = 2
Query: 2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWD---VVVPYCTVGFRSGQYAKKLMDL-GYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVE-----VKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSK 499
G+ VVLVDVR +EEM VSM+ G+VT+E FES L G +A D +VVPYCTVG+RSG YAK+LMD G +V+N EGV++WT + GSGLV P + +V A +DAG + V RVHV+GKPWD A+E + T F+ TG +K SK
Sbjct: 42 GEDVVLVDVRCKEEMDVSMIPGSVTKEHFESQLL---------------PGLRAADPQPLVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGVAGTVVGKAA---EDAGEALTSAWQPVTRVHVYGKPWDMAAEGYTTEFFSQTGGAWRFLKQKCSK 197
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A813HB18_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HB18_POLGL) HSP 1 Score: 112 bits (280), Expect = 1.890e-23 Identity = 96/267 (35.96%), Postives = 134/267 (50.19%), Query Frame = 2
Query: 2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWD-----VVVPYCTVGFRSGQYAKKLM-DLGYPSVKNSEGVVLWTHEVGSGLVAPI--AENRA-----------SVGASEAGCGDDAGV----GVE-------VKRVHVFGKPWDHASEDFETVKFTATG--------------------WLGSSVKSAFSKVFGKKKG*TFPLGCAFRRALWASAAVKICGGVVFRGDGRFETRVCSCWCSC 652
G+ ++LVDVRT EEM+VSM+ GAV ++ FE+ L K + G+ Q D +QA D ++VPYCTVG+RSG Y ++L+ + G+ +V+N EGV++WT + GS LV P+ A +RA S GA + G+ AG+ G + V VHV+GKPWD A+E F T+ FT G W G+ + F +F G + GC + W VK C VF G R WCSC
Sbjct: 238 GEDIILVDVRTPEEMQVSMIPGAVAKDLFEAEILPKLLE--GRQQ---DGQQQAIDSLSSPLIVPYCTVGYRSGLYCRELVNEHGFSNVRNGEGVIMWTFD-GSVLVKPLPGAPSRAPALPPQVYGKGSEGAQPSS-GEAAGLVSGGGTKTATAWQSVSEVHVYGKPWDMAAEGFTTIYFTPVGGALRFLRQKCQSRAALTAALWTGAFL--LFYLLFTPACGVMYDCGCVLALSKWGQ--VKPCN--VFTGPHRCP------WCSC 485
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A812UW94_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UW94_9DINO) HSP 1 Score: 111 bits (278), Expect = 5.320e-23 Identity = 77/172 (44.77%), Postives = 101/172 (58.72%), Query Frame = 2
Query: 2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWD---VVVPYCTVGFRSGQYAKKLMDL-GYPSVKNSEGVVLWTHEVGSGLVAPIAENRASV-GASEAGCGDDAGVGVE-VKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSK 499
G+ VVLVDVR +EEM VSM+ G+VT+E FES L G +A D +VVPYCTVG+RSG YAK+LM+ G +V+N EGV++WT + GSGLV P +V G S G+ E V RVHV+GKPWD A+E + T F+ +G +K S+
Sbjct: 624 GENVVLVDVRCKEEMDVSMIPGSVTKEHFESQLL---------------PGLRAADPQPLVVPYCTVGYRSGVYAKELMNKHGLQNVRNGEGVIMWTFD-GSGLVRPAPGAPGTVVGKSAEDAGEAPSTAWEPVTRVHVYGKPWDMAAEGYTTEFFSQSGGAYRFLKQKCSE 779
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A812J6E8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812J6E8_9DINO) HSP 1 Score: 100 bits (249), Expect = 5.630e-22 Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 2
Query: 41 EMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWD---VVVPYCTVGFRSGQYAKKLMDL-GYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVE-----VKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFS 496
EM VSM+ G+VT+E FES L G +A D +VVPYCTVG+RSG YAK+LMD G +V+N EGV++WT + GSGLV P + +V A +DAG + V RVHV+GKPWD A+E + T F+ TG +K S
Sbjct: 1 EMEVSMIPGSVTKEHFESQLL---------------PGLRAADPQPLVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGVAGTVVGKAA---EDAGEALTSAWQPVTRVHVYGKPWDMAAEGYTTEFFSQTGGAWRFLKQKCS 142
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A1Q9F5B3_SYMMI (Pentatricopeptide repeat-containing protein, chloroplastic n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F5B3_SYMMI) HSP 1 Score: 91.3 bits (225), Expect = 3.030e-16 Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 2
Query: 170 VVVPYCTVGFRSGQYAKKLMDL-GYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVE-----VKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSK 499
+VVPYCTVG+RSG YAK+LMD G +V+N EGV++WT + GSGLV P + +V A +DAG + V RVHV+GKPWD A+E + T F+ TG +K SK
Sbjct: 439 LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGVAGTVVGKAA---EDAGEALTSAWQPVTRVHVYGKPWDMAAEGYTTEFFSQTGGAWRFLKQKCSK 550
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A812UEF0_9DINO (PPR4 protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812UEF0_9DINO) HSP 1 Score: 89.4 bits (220), Expect = 9.770e-16 Identity = 55/119 (46.22%), Postives = 73/119 (61.34%), Query Frame = 2
Query: 170 VVVPYCTVGFRSGQYAKKLMDL-GYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVE--------VKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSK 499
+VVPYCTVG+RSG YAK+LMD G +V+N EGV++WT + GSGLV P + +V +++ G AG E V RVHV+GKPWD A+E + T F+ TG +K SK
Sbjct: 351 LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGAVGTVDSAQV-VGKAAGDAGETPTSAWQPVTRVHVYGKPWDMAAEGYTTEFFSQTGGAWRFLKQKCSK 467
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: R1D8G3_EMIHU (Rhodanese domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D8G3_EMIHU) HSP 1 Score: 81.3 bits (199), Expect = 1.550e-14 Identity = 55/171 (32.16%), Postives = 84/171 (49.12%), Query Frame = 2
Query: 2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWDVVVPYCTVGFRSGQYAKKLMDLGYP-------SVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVEVKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAF 493
G+ V+L+DVR+ E VS L GA+ + F + +P R A V+VP+CT+GFRSG Y + + G V+N EGVVLW+H+VG+ + D G V+ +HV+G WD A++ F+TV F G L ++++ A+
Sbjct: 38 GRDVILIDVRSPPERAVSTLPGALDQHSFAALAREEPERV-------------AAAVLVPFCTIGFRSGLYCEWIRGGGLGMAASSELDVRNGEGVVLWSHDVGTFV-------------------QD---GAPVRSLHVYGSAWDLAADGFDTVTFGPAGHLSAALRVAW 173
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: Q01GT9_OSTTA (Rhodanese-like domain n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01GT9_OSTTA) HSP 1 Score: 75.1 bits (183), Expect = 2.380e-12 Identity = 59/175 (33.71%), Postives = 84/175 (48.00%), Query Frame = 2
Query: 2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWDVVVPYCTVGFRSGQYAKKLM-------DLGYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVEVKRVHVFGKPWDHASEDFETV--KFTATGWLGSSVKSAFSK 499
G+R+VLVDVR E+E VS++ GA++ EE+E + RT +C V YCT+G+RSGQYA+K+ D+ + ++ S +V +THE G LV P G + KRVH FGK W ++ +E V K G LG K F +
Sbjct: 42 GRRMVLVDVRAEDERAVSVIEGAMSVEEYERA------RTTLGAHDC-----------VCYCTIGYRSGQYAEKMSKAKKADEDVEFLNLYGS--IVAYTHEGGE-LVDPA-------------------TGEKTKRVHTFGKEWSCVADGYEAVFYKSALVGGLGQMFKGLFKR 177 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10932.1238.1 >prot_S-firma_F_contig10932.1238.1 ID=prot_S-firma_F_contig10932.1238.1|Name=mRNA_S-firma_F_contig10932.1238.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=160bp MRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWDVVVPYCTVback to top mRNA from alignment at S-firma_F_contig10932:954..3710+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10932.1238.1 ID=mRNA_S-firma_F_contig10932.1238.1|Name=mRNA_S-firma_F_contig10932.1238.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2757bp|location=Sequence derived from alignment at S-firma_F_contig10932:954..3710+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10932:954..3710+ >mRNA_S-firma_F_contig10932.1238.1 ID=mRNA_S-firma_F_contig10932.1238.1|Name=mRNA_S-firma_F_contig10932.1238.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=960bp|location=Sequence derived from alignment at S-firma_F_contig10932:954..3710+ (Sphaerotrichia firma ET2_F female)back to top |