mRNA_S-firma_F_contig10932.1238.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10932.1238.1
Unique NamemRNA_S-firma_F_contig10932.1238.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: D8LAT3_ECTSI (Bile Acid:Na+ symporter family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT3_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 3.140e-79
Identity = 126/172 (73.26%), Postives = 146/172 (84.88%), Query Frame = 2
Query:    2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWDVVVPYCTVGFRSGQYAKKLMDLGYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVEVKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSKVFGKKK 517
            GK+V+LVDVRTE+EM+VSML GA+TREEFE+S LG+  RTG KF+E S EGE+AW VV PYCTVGFRSGQYAKKL+DLGYPSV+NSEGVVLWTH+VG+GLVA  A+   S G+   G G   G GVEVKR+HVFG PWDHAS+DFET+KFTATGW GS+VKSAFSK+F KKK
Sbjct:   63 GKKVLLVDVRTEDEMKVSMLRGALTREEFENSSLGEAARTGKKFRERSGEGEEAWGVVAPYCTVGFRSGQYAKKLVDLGYPSVRNSEGVVLWTHDVGNGLVARAADEVESGGSP--GSGPRNGSGVEVKRLHVFGSPWDHASDDFETIKFTATGWFGSTVKSAFSKMFKKKK 232          
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A836CAM6_9STRA (Bile Acid:Na+ symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.330e-28
Identity = 69/169 (40.83%), Postives = 92/169 (54.44%), Query Frame = 2
Query:    2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWDVVVPYCTVGFRSGQYAKKLMDLGYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVEVKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSKVFG 508
            G  V+LVDVR  EE  VSM+ GA++ +EFESSH           ++       A   VVPYCT+G+RSG YA+KL  LGY  V+N EG+V+WTH++GSGLV     +R                G E K VH +G PWD  + D+ +V F    W+ S  + A+  V G
Sbjct:   37 GTPVLLVDVRLPEEQDVSMIEGAISLDEFESSHR----------RDQYGPAALANTTVVPYCTIGYRSGAYARKLKTLGYRHVRNGEGIVMWTHDIGSGLV-----DRD---------------GRETKYVHTYGPPWDLVASDYHSVHFGVWNWIQSHSRGAWRWVTG 175          
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A813CHA3_9DINO (Hypothetical protein (Fragment) n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CHA3_9DINO)

HSP 1 Score: 116 bits (291), Expect = 9.030e-27
Identity = 80/175 (45.71%), Postives = 103/175 (58.86%), Query Frame = 2
Query:    2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWD---VVVPYCTVGFRSGQYAKKLMDL-GYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVE-----VKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSK 499
            G+ VVLVDVR +EEM VSM+ G+VT+E FES  L                G +A D   +VVPYCTVG+RSG YAK+LMD  G  +V+N EGV++WT + GSGLV P +    +V    A   +DAG  +      V RVHV+GKPWD A+E + T  F+ TG     +K   SK
Sbjct:   42 GEDVVLVDVRCKEEMDVSMIPGSVTKEHFESQLL---------------PGLRAADPQPLVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGVAGTVVGKAA---EDAGEALTSAWQPVTRVHVYGKPWDMAAEGYTTEFFSQTGGAWRFLKQKCSK 197          
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A813HB18_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HB18_POLGL)

HSP 1 Score: 112 bits (280), Expect = 1.890e-23
Identity = 96/267 (35.96%), Postives = 134/267 (50.19%), Query Frame = 2
Query:    2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWD-----VVVPYCTVGFRSGQYAKKLM-DLGYPSVKNSEGVVLWTHEVGSGLVAPI--AENRA-----------SVGASEAGCGDDAGV----GVE-------VKRVHVFGKPWDHASEDFETVKFTATG--------------------WLGSSVKSAFSKVFGKKKG*TFPLGCAFRRALWASAAVKICGGVVFRGDGRFETRVCSCWCSC 652
            G+ ++LVDVRT EEM+VSM+ GAV ++ FE+  L K +   G+ Q   D  +QA D     ++VPYCTVG+RSG Y ++L+ + G+ +V+N EGV++WT + GS LV P+  A +RA           S GA  +  G+ AG+    G +       V  VHV+GKPWD A+E F T+ FT  G                    W G+ +   F  +F    G  +  GC    + W    VK C   VF G  R        WCSC
Sbjct:  238 GEDIILVDVRTPEEMQVSMIPGAVAKDLFEAEILPKLLE--GRQQ---DGQQQAIDSLSSPLIVPYCTVGYRSGLYCRELVNEHGFSNVRNGEGVIMWTFD-GSVLVKPLPGAPSRAPALPPQVYGKGSEGAQPSS-GEAAGLVSGGGTKTATAWQSVSEVHVYGKPWDMAAEGFTTIYFTPVGGALRFLRQKCQSRAALTAALWTGAFL--LFYLLFTPACGVMYDCGCVLALSKWGQ--VKPCN--VFTGPHRCP------WCSC 485          
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A812UW94_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UW94_9DINO)

HSP 1 Score: 111 bits (278), Expect = 5.320e-23
Identity = 77/172 (44.77%), Postives = 101/172 (58.72%), Query Frame = 2
Query:    2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWD---VVVPYCTVGFRSGQYAKKLMDL-GYPSVKNSEGVVLWTHEVGSGLVAPIAENRASV-GASEAGCGDDAGVGVE-VKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSK 499
            G+ VVLVDVR +EEM VSM+ G+VT+E FES  L                G +A D   +VVPYCTVG+RSG YAK+LM+  G  +V+N EGV++WT + GSGLV P      +V G S    G+      E V RVHV+GKPWD A+E + T  F+ +G     +K   S+
Sbjct:  624 GENVVLVDVRCKEEMDVSMIPGSVTKEHFESQLL---------------PGLRAADPQPLVVPYCTVGYRSGVYAKELMNKHGLQNVRNGEGVIMWTFD-GSGLVRPAPGAPGTVVGKSAEDAGEAPSTAWEPVTRVHVYGKPWDMAAEGYTTEFFSQSGGAYRFLKQKCSE 779          
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A812J6E8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812J6E8_9DINO)

HSP 1 Score: 100 bits (249), Expect = 5.630e-22
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 2
Query:   41 EMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWD---VVVPYCTVGFRSGQYAKKLMDL-GYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVE-----VKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFS 496
            EM VSM+ G+VT+E FES  L                G +A D   +VVPYCTVG+RSG YAK+LMD  G  +V+N EGV++WT + GSGLV P +    +V    A   +DAG  +      V RVHV+GKPWD A+E + T  F+ TG     +K   S
Sbjct:    1 EMEVSMIPGSVTKEHFESQLL---------------PGLRAADPQPLVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGVAGTVVGKAA---EDAGEALTSAWQPVTRVHVYGKPWDMAAEGYTTEFFSQTGGAWRFLKQKCS 142          
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A1Q9F5B3_SYMMI (Pentatricopeptide repeat-containing protein, chloroplastic n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F5B3_SYMMI)

HSP 1 Score: 91.3 bits (225), Expect = 3.030e-16
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  170 VVVPYCTVGFRSGQYAKKLMDL-GYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVE-----VKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSK 499
            +VVPYCTVG+RSG YAK+LMD  G  +V+N EGV++WT + GSGLV P +    +V    A   +DAG  +      V RVHV+GKPWD A+E + T  F+ TG     +K   SK
Sbjct:  439 LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGVAGTVVGKAA---EDAGEALTSAWQPVTRVHVYGKPWDMAAEGYTTEFFSQTGGAWRFLKQKCSK 550          
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: A0A812UEF0_9DINO (PPR4 protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812UEF0_9DINO)

HSP 1 Score: 89.4 bits (220), Expect = 9.770e-16
Identity = 55/119 (46.22%), Postives = 73/119 (61.34%), Query Frame = 2
Query:  170 VVVPYCTVGFRSGQYAKKLMDL-GYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVE--------VKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAFSK 499
            +VVPYCTVG+RSG YAK+LMD  G  +V+N EGV++WT + GSGLV P +    +V +++   G  AG   E        V RVHV+GKPWD A+E + T  F+ TG     +K   SK
Sbjct:  351 LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLVRPASGAVGTVDSAQV-VGKAAGDAGETPTSAWQPVTRVHVYGKPWDMAAEGYTTEFFSQTGGAWRFLKQKCSK 467          
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: R1D8G3_EMIHU (Rhodanese domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D8G3_EMIHU)

HSP 1 Score: 81.3 bits (199), Expect = 1.550e-14
Identity = 55/171 (32.16%), Postives = 84/171 (49.12%), Query Frame = 2
Query:    2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWDVVVPYCTVGFRSGQYAKKLMDLGYP-------SVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVEVKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAF 493
            G+ V+L+DVR+  E  VS L GA+ +  F +    +P R              A  V+VP+CT+GFRSG Y + +   G          V+N EGVVLW+H+VG+ +                    D   G  V+ +HV+G  WD A++ F+TV F   G L ++++ A+
Sbjct:   38 GRDVILIDVRSPPERAVSTLPGALDQHSFAALAREEPERV-------------AAAVLVPFCTIGFRSGLYCEWIRGGGLGMAASSELDVRNGEGVVLWSHDVGTFV-------------------QD---GAPVRSLHVYGSAWDLAADGFDTVTFGPAGHLSAALRVAW 173          
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Match: Q01GT9_OSTTA (Rhodanese-like domain n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01GT9_OSTTA)

HSP 1 Score: 75.1 bits (183), Expect = 2.380e-12
Identity = 59/175 (33.71%), Postives = 84/175 (48.00%), Query Frame = 2
Query:    2 GKRVVLVDVRTEEEMRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWDVVVPYCTVGFRSGQYAKKLM-------DLGYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGASEAGCGDDAGVGVEVKRVHVFGKPWDHASEDFETV--KFTATGWLGSSVKSAFSK 499
            G+R+VLVDVR E+E  VS++ GA++ EE+E +      RT     +C           V YCT+G+RSGQYA+K+        D+ + ++  S  +V +THE G  LV P                     G + KRVH FGK W   ++ +E V  K    G LG   K  F +
Sbjct:   42 GRRMVLVDVRAEDERAVSVIEGAMSVEEYERA------RTTLGAHDC-----------VCYCTIGYRSGQYAEKMSKAKKADEDVEFLNLYGS--IVAYTHEGGE-LVDPA-------------------TGEKTKRVHTFGKEWSCVADGYEAVFYKSALVGGLGQMFKGLFKR 177          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10932.1238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAT3_ECTSI3.140e-7973.26Bile Acid:Na+ symporter family n=1 Tax=Ectocarpus ... [more]
A0A836CAM6_9STRA5.330e-2840.83Bile Acid:Na+ symporter family n=1 Tax=Tribonema m... [more]
A0A813CHA3_9DINO9.030e-2745.71Hypothetical protein (Fragment) n=2 Tax=Symbiodini... [more]
A0A813HB18_POLGL1.890e-2335.96Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A812UW94_9DINO5.320e-2344.77Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812J6E8_9DINO5.630e-2243.48Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A1Q9F5B3_SYMMI3.030e-1647.41Pentatricopeptide repeat-containing protein, chlor... [more]
A0A812UEF0_9DINO9.770e-1646.22PPR4 protein (Fragment) n=1 Tax=Symbiodinium sp. C... [more]
R1D8G3_EMIHU1.550e-1432.16Rhodanese domain-containing protein n=3 Tax=Emilia... [more]
Q01GT9_OSTTA2.380e-1233.71Rhodanese-like domain n=2 Tax=Ostreococcus tauri T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10932contigS-firma_F_contig10932:954..3710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LAT3
Max annot lvl2759|Eukaryota
Evalue3.14e-75
EggNOG OGs2E3Y9@1|root,2SAXP@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-27_006450.1
Exons5
Model size1140
Cds size480
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.6242487-UTR-S-firma_F_contig10932:953..9961622815637.6242487-UTR-S-firma_F_contig10932:953..996Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10932 954..996 +
1696949470.7415133-UTR-S-firma_F_contig10932:953..9961696949470.7415133-UTR-S-firma_F_contig10932:953..996Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10932 954..996 +
1622815637.7084007-UTR-S-firma_F_contig10932:3093..37101622815637.7084007-UTR-S-firma_F_contig10932:3093..3710Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10932 3094..3710 +
1696949470.822304-UTR-S-firma_F_contig10932:3093..37101696949470.822304-UTR-S-firma_F_contig10932:3093..3710Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10932 3094..3710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.6386201-CDS-S-firma_F_contig10932:996..10311622815637.6386201-CDS-S-firma_F_contig10932:996..1031Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10932 997..1031 +
1696949470.7536747-CDS-S-firma_F_contig10932:996..10311696949470.7536747-CDS-S-firma_F_contig10932:996..1031Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10932 997..1031 +
1622815637.649669-CDS-S-firma_F_contig10932:1413..15721622815637.649669-CDS-S-firma_F_contig10932:1413..1572Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10932 1414..1572 +
1696949470.7635832-CDS-S-firma_F_contig10932:1413..15721696949470.7635832-CDS-S-firma_F_contig10932:1413..1572Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10932 1414..1572 +
1622815637.6598122-CDS-S-firma_F_contig10932:1932..20771622815637.6598122-CDS-S-firma_F_contig10932:1932..2077Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10932 1933..2077 +
1696949470.7822635-CDS-S-firma_F_contig10932:1932..20771696949470.7822635-CDS-S-firma_F_contig10932:1932..2077Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10932 1933..2077 +
1622815637.6784108-CDS-S-firma_F_contig10932:2555..26381622815637.6784108-CDS-S-firma_F_contig10932:2555..2638Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10932 2556..2638 +
1696949470.7940745-CDS-S-firma_F_contig10932:2555..26381696949470.7940745-CDS-S-firma_F_contig10932:2555..2638Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10932 2556..2638 +
1622815637.6959617-CDS-S-firma_F_contig10932:3035..30931622815637.6959617-CDS-S-firma_F_contig10932:3035..3093Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10932 3036..3093 +
1696949470.8046339-CDS-S-firma_F_contig10932:3035..30931696949470.8046339-CDS-S-firma_F_contig10932:3035..3093Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10932 3036..3093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10932.1238.1prot_S-firma_F_contig10932.1238.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10932 997..3093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10932.1238.1

>prot_S-firma_F_contig10932.1238.1 ID=prot_S-firma_F_contig10932.1238.1|Name=mRNA_S-firma_F_contig10932.1238.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=160bp
MRVSMLGGAVTREEFESSHLGKPVRTGGKFQECSDEGEQAWDVVVPYCTV
GFRSGQYAKKLMDLGYPSVKNSEGVVLWTHEVGSGLVAPIAENRASVGAS
EAGCGDDAGVGVEVKRVHVFGKPWDHASEDFETVKFTATGWLGSSVKSAF
SKVFGKKKG*
back to top

mRNA from alignment at S-firma_F_contig10932:954..3710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10932.1238.1 ID=mRNA_S-firma_F_contig10932.1238.1|Name=mRNA_S-firma_F_contig10932.1238.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2757bp|location=Sequence derived from alignment at S-firma_F_contig10932:954..3710+ (Sphaerotrichia firma ET2_F female)
AGGGAAGAGGGTGGTGCTTGTTGACGTGCGGACGGAGGAGGAGATGAGGG TTTCCATGCTTGGAGGCGCTGTGACCAGGCAAGCCATCCCCTAACCCTAC CGGGGCTTTCACCGTGTTTTGTTGGAACGTGACGCGTTTGTTTGTGCTTT TGCGTGCGAGCGTACACGCAGACAAAAGGTTGATTCCGCCGTCAACAACA CTGCTGCTGTGCTTTCGTTTCGTCGTTTTTCGCGCGTTGTTGGTTGGCTG GATCTAGTTCGCCTCTGGGCGCGGCGGTTAACGTCTCCGCTGTATGGCAA GGGCTATTCCTTCGTGGGGGGCGTGCTGCTGTGAGGCTTTAAGTGTACCT GAATACCCCCACTGCTGTAGCTCTCATCCTCTCTTACGTGTCGGTACGTA TGTGTCTCGGTATGCCTCCCGCCCTCACCAACTTTTGGGCTTTCAATTTC CTACGAGCAGGGAAGAGTTCGAGAGCAGCCACCTCGGCAAGCCGGTGAGG ACCGGAGGAAAGTTCCAGGAATGTTCCGACGAGGGCGAGCAGGCTTGGGA TGTCGTGGTCCCTTACTGTACGGTCGGATTCCGATCAGGCCAGTATGCCA AGAAACTCATGGACCTAGGGTAAGTCAAGTTTTTTGGATGATGCTGCTGT AGATTAAAAATGGATTTTGTCGTGAGAGTGCGTTGTTCCGGAGTTTCCGC AGGGAGGAAGAACAGTTGTACCACCCGCAGCACACCCACGCTAGTCTACG ATACTCTATCGCCTCAAAAGGTTCGGGCATCTTGAGCCCGTAATCCATCA ATACGTCGAAGAATAGTTCAAAGTATGCCGGCAGACGTGACGCCTACGTC GCTTTGAGCCCCCATAGTACGCATGGAGAGTATATACGAAGTATAACAGC TCATGGGGAAGGACCATGCCAAAGCTGGTTTTCCTAAATACAACACATTC ACGCTCACTACCCTGTTGGCGCTACTCAGGTACCCATCGGTGAAGAACAG CGAGGGCGTCGTGCTGTGGACGCACGAAGTCGGCAGCGGCTTAGTCGCGC CCATTGCCGAAAACAGAGCATCCGTGGGCGCCTCGGAGGCTGGTTGCGGG GACGATGCCGGCGTTGGTGTTGAGGTGGGGGGTCGTTGCTGGAGCCAGCT GGGGGGGGTACAAGTAAGAATGAGGGTTTCAACTCCGTGAGCGCGGCGTT TCCCTCGCTCGCTTTCGTGGGCCAAGGGGGACTAGGGTGTGATTTCTTGC TTCTTGCCCCCCTTTGTGTTGAGTGTTGCACACCCTCCTGCGACACGGCG GCCTGTCAGACATCCCCTCCGGGCTTGGGGGCATGCTTTGACGTCGGAAT ACTGCAACACAGTAGTCCTTCAAGAGTACGATCCCAACCCCAGTGGAATC TGGGAAGCGCCCACGTTGGACGGAAACAAATCGTCCGCACTGCGAATAAA AATGGTACAATATGATGTGGCTGTGTCCTCGAAGGATCAGCCTGACAAGT GAAAATAAATTGATTCGACCAACCACGAAACATTCGACTATTATAATCCC CCAAACAGAACCCATCTGCCACCCCACCCCGCCCCGTCCCGCCTTGGAAC AGGTGAAACGAGTGCACGTGTTCGGTAAGCCCTGGGACCACGCAAGCGAA GACTTTGAAACGGTCAAATTCACAGCAACAGGATGGTAAGTGGCAACCGT GTTATCGCGTCTTGTTTTCGCGGGTTCGGGAGTGTGAAATACTCTCCGTA ACTCCGCATGCTGGTGGCGTTTGCCAGAGAACATGGAAAGCCTGGCGCGC GCGGCAAACGAGAGGTTGTGGGGCGTGCACAAGCGTGTTTGTTGTATCCA AGTGTTTTTGATGACACCCAGCGATCTCTCTAATGCAGCGAATTGTACGG CCATCCTGCCATCGCTGCCGCTTTAGTTTTTCCTTATACGTGTTTATTTC GGTACAGTAGTAGCACGCCTTTCAGCCGACGAGATGAGCTTGTAACCTCG CCTCGCCTCGCCTCGCCTGCCCTGTTTCGCCCCCTCTCTGCCTCGGGCGC CTTTACTCAATGTCCCGCATATCGTGAAACAGGCTGGGGTCATCTGTGAA GTCCGCGTTCTCGAAGGTTTTCGGGAAGAAAAAAGGCTAAACCTTTCCGC TCGGCTGTGCTTTCAGGCGTGCTTTGTGGGCGAGCGCTGCCGTCAAGATT TGCGGTGGTGTTGTTTTCAGAGGCGACGGACGATTTGAAACACGCGTGTG TTCGTGTTGGTGTTCGTGTCGTTTTGGTGCAGTGTACCCTAGAGTCATTT TCGGCGAGGCCCAGCCTACAGGTTGACAGCAGTGGAAAGTATTGTTTGTT TCAAGCTGGGTGATATCTTTGACGTCGAGTGTAAAAGTAGAAAAAGGGGT GGGTCGGATCGTGGCATGTACAGAGATACGCACTCGTGCTTAGCGGGAGC CGAGGAGCACAGTCCATAAAATATCCGCGATGGCAAAGTACAAAATACCG AAGGGATCAATAGGGGCAAGGGCGTACGGCGCAGCTATCGTCGGAACACC GCTGTAAAAACAATGATGTGTACAAGTTGGTGGCTAGTTTAATTTGCAGG GTGTGGATTGAAATGAAGTGTTCTCTGGTGTTCGCTGTTGGACGTGGAAA CGGTTTGCTGGGGTAAATGTACCTCGATATCATTAGAAACTGTTGTATCA TACCACGCCGTTTTTTCATTATTTTGGTCGGATGGGGGCCTCTCTTCTCG AAATTAC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10932:954..3710+

>mRNA_S-firma_F_contig10932.1238.1 ID=mRNA_S-firma_F_contig10932.1238.1|Name=mRNA_S-firma_F_contig10932.1238.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=960bp|location=Sequence derived from alignment at S-firma_F_contig10932:954..3710+ (Sphaerotrichia firma ET2_F female)
ATGAGGGTTTCCATGCTTGGAGGCGCTGTGACCAGATGAGGGTTTCCATG
CTTGGAGGCGCTGTGACCAGGGAAGAGTTCGAGAGCAGCCACCTCGGCAA
GCCGGTGAGGACCGGAGGAAAGTTCCAGGAATGTTCCGACGAGGGCGAGC
AGGCTTGGGATGTCGTGGTCCCTTACTGTACGGTCGGATTCCGATCAGGC
CAGTATGCCAAGAAACTCATGGACCTAGGGGAAGAGTTCGAGAGCAGCCA
CCTCGGCAAGCCGGTGAGGACCGGAGGAAAGTTCCAGGAATGTTCCGACG
AGGGCGAGCAGGCTTGGGATGTCGTGGTCCCTTACTGTACGGTCGGATTC
CGATCAGGCCAGTATGCCAAGAAACTCATGGACCTAGGGTACCCATCGGT
GAAGAACAGCGAGGGCGTCGTGCTGTGGACGCACGAAGTCGGCAGCGGCT
TAGTCGCGCCCATTGCCGAAAACAGAGCATCCGTGGGCGCCTCGGAGGCT
GGTTGCGGGGACGATGCCGGCGTTGGTGTTGAGGTACCCATCGGTGAAGA
ACAGCGAGGGCGTCGTGCTGTGGACGCACGAAGTCGGCAGCGGCTTAGTC
GCGCCCATTGCCGAAAACAGAGCATCCGTGGGCGCCTCGGAGGCTGGTTG
CGGGGACGATGCCGGCGTTGGTGTTGAGGTGAAACGAGTGCACGTGTTCG
GTAAGCCCTGGGACCACGCAAGCGAAGACTTTGAAACGGTCAAATTCACA
GCAACAGGATGGTGAAACGAGTGCACGTGTTCGGTAAGCCCTGGGACCAC
GCAAGCGAAGACTTTGAAACGGTCAAATTCACAGCAACAGGATGGCTGGG
GTCATCTGTGAAGTCCGCGTTCTCGAAGGTTTTCGGGAAGAAAAAAGGCT
AAGCTGGGGTCATCTGTGAAGTCCGCGTTCTCGAAGGTTTTCGGGAAGAA
AAAAGGCTAA
back to top