mRNA_S-firma_F_contig10931.1237.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10931.1237.1 vs. uniprot
Match: D7FZW5_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW5_ECTSI) HSP 1 Score: 471 bits (1211), Expect = 2.460e-158 Identity = 248/267 (92.88%), Postives = 255/267 (95.51%), Query Frame = 1
Query: 1 DVVTVSGVVKSVNAELASGRVNKRAKASGLYLIYLEANSLVNARQENGPAGTEEGKSADANKGKDSGGGGSSRSKSTTHFTPDELQAILQIAEDDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSRNSEVATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGVVASLSARCSVLAAANPIGGHYNRGKTIAEN 801
DVVTVSGVVKSVNAE ASGRVNKRAKASGLYLIYLEANSLVNARQ++G AG EEGKS++ + KDS GG +RSKST HFTP+ELQ ILQIA DDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSRNSEVATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGVVASLSARCSVLAAANPIGGHYNRGKTIAEN
Sbjct: 289 DVVTVSGVVKSVNAEFASGRVNKRAKASGLYLIYLEANSLVNARQDDGQAGGEEGKSSNTERSKDSSGG--ARSKSTAHFTPEELQGILQIAHDDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSRNSEVATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGVVASLSARCSVLAAANPIGGHYNRGKTIAEN 553
BLAST of mRNA_S-firma_F_contig10931.1237.1 vs. uniprot
Match: A0A6H5L626_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L626_9PHAE) HSP 1 Score: 411 bits (1057), Expect = 4.250e-141 Identity = 217/238 (91.18%), Postives = 227/238 (95.38%), Query Frame = 1
Query: 1 DVVTVSGVVKSVNAELASGRVNKRAKASGLYLIYLEANSLVNARQENGPAGTEEGKSADANKGKDSGGGGSSRSKSTTHFTPDELQAILQIAEDDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSRNSEVATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGVV 714
DVVTVSGVVKSVNAE ASGRVNKRAKASGLYLIYLEANSLVNARQ++GPAG E+GKS++ + KDS GG +RSKST HFTP+ELQ ILQIA DDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSRNSEVATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG++
Sbjct: 175 DVVTVSGVVKSVNAEFASGRVNKRAKASGLYLIYLEANSLVNARQDDGPAG-EDGKSSNTERSKDSSGG--ARSKSTAHFTPEELQGILQIAHDDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSRNSEVATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGLM 409
BLAST of mRNA_S-firma_F_contig10931.1237.1 vs. uniprot
Match: A0A836CFT0_9STRA (MCM2/3/5 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT0_9STRA) HSP 1 Score: 294 bits (753), Expect = 3.500e-90 Identity = 173/285 (60.70%), Postives = 197/285 (69.12%), Query Frame = 1
Query: 10 TVSGVVKSVNAELASGRVNKRAKASGLYLIYLEANSLVNARQENGPAGTEEGKSADANKGKDSGGGGSSRS---KSTTHFTPDELQAILQIAE-DDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSRNSEVATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNT----TSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCC-------------IDEFDKMGCDPHALLEAMEQQRISIAKAGVVASLSARCSVLAAANPIGGHYNRGKTIAEN 801
TVSG V+SVNAELASGR K AKASGLYL+YL AN + NAR G GG +R K+ FT ++L I +A PF L+V+SLCP IFGHE+VKAGL+L L G EV TR D HVLVVGDPGLGKSQML A S A+PRSVYVCGNT T+ TGLTVTL+K+G G+VGLE+GALVL+DQG CC IDEFDKMGCDP ALLEAMEQQRISIAK G+VASLSARCSV+AAANP GGHY+RG+T+AEN
Sbjct: 302 TVSGTVRSVNAELASGRFGKNAKASGLYLLYLRANCVTNAR----------------------GVGGGARDGDDKTIQQFTQEDLDEIRAVASVHPSPFELIVASLCPGIFGHELVKAGLVLALAGDIG--DEVPTRSDAHVLVVGDPGLGKSQMLQAVSAAAPRSVYVCGNTARRVTAATGLTVTLTKDG--GDVGLESGALVLADQGVCCAXXXXXXXXXXXXIDEFDKMGCDPTALLEAMEQQRISIAKGGIVASLSARCSVVAAANPAGGHYSRGRTVAEN 560
BLAST of mRNA_S-firma_F_contig10931.1237.1 vs. uniprot
Match: L1K206_GUITC (Minichromosome maintenance protein 8 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K206_GUITC) HSP 1 Score: 271 bits (694), Expect = 7.480e-84 Identity = 146/271 (53.87%), Postives = 183/271 (67.53%), Query Frame = 1
Query: 1 DVVTVSGVVKSVNAELASGRVNKRAKASGLYLIYLEANSLVNARQENGPAGTEEGKSADANKGKDSGGGGSSRSKSTTHFTPDELQAILQIAEDDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSRNSE----VATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGVVASLSARCSVLAAANPIGGHYNRGKTIAEN 801
D + +SG+VK V+ + G R K L+L+Y+EANS+ N+++ +G T FT +L+A+ +IA D D F L+V+S+CPSI+GHE+VK L L LFGG +N E +A R DPH+L+VG+PGLGKSQML A S +PR VYVCGNTTST GLTVT+ K+ SG+ LEAGALVL DQG CCIDEFDKMG + ALLEAMEQQ IS+AKAG+V SLSAR +V+AAANPIGGHYNR KT+ EN
Sbjct: 117 DEIAISGIVKVVSTDGDGGH---RGKNKCLFLLYIEANSISNSKKASGDK------------------------SDTLVFTSKDLKAVKEIANDSDTFKLIVNSICPSIYGHEVVKMALALALFGGCQKNGEEKNKLAVRGDPHILIVGEPGLGKSQMLQAVSVLAPRGVYVCGNTTSTAGLTVTVGKDSGSGDFSLEAGALVLGDQGVCCIDEFDKMGGEQQALLEAMEQQSISVAKAGIVCSLSARSAVIAAANPIGGHYNRAKTVCEN 360
BLAST of mRNA_S-firma_F_contig10931.1237.1 vs. uniprot
Match: A0A1S3JYB5_LINUN (DNA helicase MCM8 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JYB5_LINUN) HSP 1 Score: 276 bits (707), Expect = 1.160e-83 Identity = 154/271 (56.83%), Postives = 190/271 (70.11%), Query Frame = 1
Query: 1 DVVTVSGVVKSVNAELASGRVNKRAKASGLYLIYLEANSLVNARQENGPAGTEEGKSADANKGKDSGGGGSSRSKSTTHFTPDELQAILQIAEDDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSR----NSEVATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGVVASLSARCSVLAAANPIGGHYNRGKTIAEN 801
D+VTVSG+VK + E GR + ++L+YL ANS+ N++ AG E+G + D FT EL AI +I + F L+V SLCPSI+GHE+VKAGL+LGLFGG+ + + + R DPH+LVVGDPGLGKSQML A + +PRSVYVCGNTT+++GLTVTLSKEG SG+ LEAGALVL+DQG CCIDEFDKMG ALLEAMEQQ ISIAKAG+V SL AR S+LAAANP+GGHYN+GKT++EN
Sbjct: 347 DIVTVSGIVKVTSTEKGRGRNKDKC----MFLLYLHANSVNNSKGPKSGAG-EQGLAID--------------------FTLKELYAIEEIQSEKKLFRLIVGSLCPSIYGHEMVKAGLVLGLFGGSQKYANDKNRIPVRGDPHILVVGDPGLGKSQMLQAVAGVAPRSVYVCGNTTTSSGLTVTLSKEGGSGDYALEAGALVLADQGCCCIDEFDKMGSQHQALLEAMEQQSISIAKAGIVCSLPARTSILAAANPVGGHYNKGKTVSEN 592
BLAST of mRNA_S-firma_F_contig10931.1237.1 vs. uniprot
Match: A0A024UPV4_9STRA (MCM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPV4_9STRA) HSP 1 Score: 268 bits (684), Expect = 5.540e-83 Identity = 148/268 (55.22%), Postives = 188/268 (70.15%), Query Frame = 1
Query: 4 VVTVSGVVKSVNAELASGRVNKRAKASGLYLIYLEANSLVNARQENGPAGTEEGKSADANKGKDSGGGGSSRSKSTTHFTPDELQAILQIAEDDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSRNSE--VATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGVVASLSARCSVLAAANPIGGHYNRGKTIAEN 801
+VT+ G VK+VN+E+ SGR K+A+AS LY++Y+ ANS+V Q A+A S ++ T F+ +L AI +IA DD F +V S CP I+ +E+VKAGL+L LFGG + + V TR D HVL+VGDPGLGKSQML A S +PR VYV GNT +TTGLTVT+ K+ +SG+ LEAGALVL+DQG CCIDEFDKM CD ALLEAMEQQ ISIAKAG+V +L+AR SV+AAANP GGHYNR ++++EN
Sbjct: 257 IVTICGAVKAVNSEVHSGRFGKQAQASSLYVLYIVANSVVTLNQ------------AEA-----------SPTEDTNEFSDQDLDAICKIAHDDHVFDRLVHSFCPGIYRNELVKAGLLLALFGGAQKKEDNAVFTRSDSHVLLVGDPGLGKSQMLRAVSMITPRGVYVGGNTATTTGLTVTMVKD-SSGDYALEAGALVLADQGVCCIDEFDKMACDYQALLEAMEQQSISIAKAGIVCNLNARTSVIAAANPSGGHYNRSRSVSEN 500
BLAST of mRNA_S-firma_F_contig10931.1237.1 vs. uniprot
Match: A0A7M7PR06_STRPU (MCM domain-containing protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7PR06_STRPU) HSP 1 Score: 275 bits (702), Expect = 1.250e-82 Identity = 154/272 (56.62%), Postives = 191/272 (70.22%), Query Frame = 1
Query: 1 DVVTVSGVVKSVNAELASGRVNKRAKASGLYLIYLEANSLVNARQENGPAGTEEGKSADANKGKD-SGGGGSSRSKSTTHFTPDELQAILQIAEDDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSR----NSEVATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGVVASLSARCSVLAAANPIGGHYNRGKTIAEN 801
D VTVSG+VK N + GR + ++L+Y+ ANSL N ++ + KG D SGG G+ + F+ EL AI +I ++ F L++ SLCP+I+GHE+VKAGLILGL GGT + + + R DPH+LVVGDPGLGKSQML AAS +PR VYVCGNTT+T+GLTVTL+K+G+SG+ LEAGALVL DQG CCIDEFDKMG ALLEAMEQQ ISIAKAGVV SL AR S+LAAANP+GGHYN+ KT++EN
Sbjct: 380 DTVTVSGIVKVSNVDEGKGRNKDKC----MFLLYIHANSLSNLKK--------------SKKGSDVSGGIGAG---AAVDFSIKELYAIQEIQSQENLFKLIIGSLCPTIYGHELVKAGLILGLLGGTHKYTNDKNRIPVRGDPHILVVGDPGLGKSQMLQAASNVAPRGVYVCGNTTTTSGLTVTLTKDGSSGDYSLEAGALVLGDQGCCCIDEFDKMGSQHQALLEAMEQQSISIAKAGVVCSLPARTSILAAANPVGGHYNKAKTVSEN 630
BLAST of mRNA_S-firma_F_contig10931.1237.1 vs. uniprot
Match: UPI0014551615 (DNA helicase MCM8-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014551615) HSP 1 Score: 274 bits (700), Expect = 1.290e-82 Identity = 156/271 (57.56%), Postives = 187/271 (69.00%), Query Frame = 1
Query: 1 DVVTVSGVVKSVNAELASGRVNKRAKASGLYLIYLEANSLVNARQENGPAGTEEGKSADANKGKDSGGGGSSRSKSTTHFTPDELQAILQIAEDDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSR----NSEVATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGVVASLSARCSVLAAANPIGGHYNRGKTIAEN 801
DVVT+ GVVK N + GR + ++L+YL ANS+ N Q+ G + G+S+ A G FT EL AI +I E + F L+V S+CP+I+GHE+VKAGLILGL GGT + + + R DPH+LVVGDPGLGKSQML A S +PR VYVCGNTT+T+GLTVTLSKEG SG+ LEAGALVL DQG CCIDEFDKMG ALLEAMEQQ ISIAKAGVV SL AR S+LAAANP+GGHYN+ KT++EN
Sbjct: 339 DVVTIGGVVKVSNVDEGHGRNKDKC----MFLLYLHANSVQN--QKRGKKASSGGESSPAGTG------------IAMDFTLKELYAIQEIQEQKNLFRLLVGSICPAIYGHEMVKAGLILGLLGGTHKYVNDKNRIPVRGDPHILVVGDPGLGKSQMLQAVSNVAPRGVYVCGNTTTTSGLTVTLSKEGGSGDFALEAGALVLGDQGCCCIDEFDKMGNQHQALLEAMEQQSISIAKAGVVCSLPARTSILAAANPVGGHYNKAKTVSEN 591
BLAST of mRNA_S-firma_F_contig10931.1237.1 vs. uniprot
Match: W4H1Q8_9STRA (MCM domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H1Q8_9STRA) HSP 1 Score: 270 bits (691), Expect = 1.740e-82 Identity = 148/268 (55.22%), Postives = 188/268 (70.15%), Query Frame = 1
Query: 4 VVTVSGVVKSVNAELASGRVNKRAKASGLYLIYLEANSLVNARQENGPAGTEEGKSADANKGKDSGGGGSSRSKSTTHFTPDELQAILQIAEDDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSRNSE--VATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGVVASLSARCSVLAAANPIGGHYNRGKTIAEN 801
+VT+ G VK+VN+E+ SGR K+A+AS LY++Y+ ANS+VN Q A+ +K + T F+P +L AI IA DD F ++ S CP I+ +E+VKAGL+L LFGG + + V TR D HVL+VGDPGLGKSQML A S +PR VYV GNT +TTGLTVT+ K+ +SG+ LEAGALVL+DQG CCIDEFDKM CD ALLEAMEQQ ISIAKAG+V +L+AR SV+AAANP GGHYNR ++++EN
Sbjct: 208 IVTICGPVKAVNSEVHSGRFGKQAQASSLYVLYIVANSVVNHNQ------------AETSK------------EDTAEFSPQDLDAIYTIAHDDQVFDRLIHSFCPGIYRNELVKAGLLLALFGGAQKKEDNAVFTRSDSHVLLVGDPGLGKSQMLRAVSMITPRGVYVGGNTATTTGLTVTMVKD-SSGDYALEAGALVLADQGVCCIDEFDKMACDYQALLEAMEQQSISIAKAGIVCNLNARTSVIAAANPSGGHYNRSRSVSEN 450
BLAST of mRNA_S-firma_F_contig10931.1237.1 vs. uniprot
Match: A0A8B7YXA5_ACAPL (DNA helicase MCM8-like n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7YXA5_ACAPL) HSP 1 Score: 273 bits (699), Expect = 1.800e-82 Identity = 156/271 (57.56%), Postives = 186/271 (68.63%), Query Frame = 1
Query: 1 DVVTVSGVVKSVNAELASGRVNKRAKASGLYLIYLEANSLVNARQENGPAGTEEGKSADANKGKDSGGGGSSRSKSTTHFTPDELQAILQIAEDDDPFGLVVSSLCPSIFGHEIVKAGLILGLFGGTSR----NSEVATRCDPHVLVVGDPGLGKSQMLHAASQASPRSVYVCGNTTSTTGLTVTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAGVVASLSARCSVLAAANPIGGHYNRGKTIAEN 801
DVVT+ GVVK N + GR + ++L+YL ANS+ N Q+ G + +S+ G FT EL AI +I + + F L+V SLCP+I+GHE+VKAGLILGLFGGT R + + R DPH+LVVGDPGLGKSQML A S +PR VYVCGNTT+T+GLTVTLSKEG SG+ LEAGALVL DQG CCIDEFDKMG ALLEAMEQQ ISIAKAGVV SL AR S+LAAANP+GGHYN+ KT++EN
Sbjct: 339 DVVTIGGVVKVSNIDEGHGRNKDKC----MFLLYLHANSVQN--QKRGKKAVSDDESSPTGMG------------IAMDFTLKELYAIQEIQDQKNLFRLLVGSLCPAIYGHEMVKAGLILGLFGGTHRFVNDKNRIPVRGDPHILVVGDPGLGKSQMLQATSNVAPRGVYVCGNTTTTSGLTVTLSKEGGSGDYALEAGALVLGDQGCCCIDEFDKMGNQHQALLEAMEQQSISIAKAGVVCSLPARTSILAAANPVGGHYNKAKTVSEN 591 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10931.1237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10931.1237.1 >prot_S-firma_F_contig10931.1237.1 ID=prot_S-firma_F_contig10931.1237.1|Name=mRNA_S-firma_F_contig10931.1237.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=267bp DVVTVSGVVKSVNAELASGRVNKRAKASGLYLIYLEANSLVNARQENGPAback to top mRNA from alignment at S-firma_F_contig10931:1559..4944+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10931.1237.1 ID=mRNA_S-firma_F_contig10931.1237.1|Name=mRNA_S-firma_F_contig10931.1237.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3386bp|location=Sequence derived from alignment at S-firma_F_contig10931:1559..4944+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10931:1559..4944+ >mRNA_S-firma_F_contig10931.1237.1 ID=mRNA_S-firma_F_contig10931.1237.1|Name=mRNA_S-firma_F_contig10931.1237.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1602bp|location=Sequence derived from alignment at S-firma_F_contig10931:1559..4944+ (Sphaerotrichia firma ET2_F female)back to top |