mRNA_S-firma_F_contig10930.1235.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10930.1235.1
Unique NamemRNA_S-firma_F_contig10930.1235.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10930.1235.1 vs. uniprot
Match: D7G3L5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L5_ECTSI)

HSP 1 Score: 465 bits (1197), Expect = 1.490e-148
Identity = 242/266 (90.98%), Postives = 255/266 (95.86%), Query Frame = 1
Query:    1 PDLAHCFELHSGKLLGDKRNREGRLYFKASSEEELYAWMVPLRILVGSHNLVRTGAAGSMCYVDVARRAELVNTRNRAGETPLHYSAKGEGRAERDTIGRVQIATWLVENGADVNAADRGGSTALHVAVKRGHVPXXXXXXXXXXXXXXXXXXXXSPLDLVKREQDVQDIAVGHFKAAERSPMLAPPVKLSSLTYLSFNLERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRPNYLWWAASYHMQNPVENLEPGTRL 798
            PDLAHCFELHSGKLLGDKRNREGRLYFKA SEEELY+WMVPLR+LVGSHNLVRTGAAGSMCYVDVARR ELVN RNRAGETPLHYSAKGEG+AERD IGRVQIATWLVENG++VNAAD+GGSTALHVAV+RGHVP   XXXXXXXXXXXXXXX  SPL+LV R+QDV+DIAVGHFKAAERSPMLAPPVKLSSLTYLSF+LERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRP+YLWW+ SYHMQNPVENLEPGTRL
Sbjct: 1493 PDLAHCFELHSGKLLGDKRNREGRLYFKALSEEELYSWMVPLRVLVGSHNLVRTGAAGSMCYVDVARRVELVNMRNRAGETPLHYSAKGEGKAERDAIGRVQIATWLVENGSEVNAADKGGSTALHVAVRRGHVPLAAXXXXXXXXXXXXXXXGRSPLELVNRDQDVEDIAVGHFKAAERSPMLAPPVKLSSLTYLSFHLERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRPSYLWWSTSYHMQNPVENLEPGTRL 1758          
BLAST of mRNA_S-firma_F_contig10930.1235.1 vs. uniprot
Match: A0A836CBL8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL8_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.500e-76
Identity = 131/268 (48.88%), Postives = 175/268 (65.30%), Query Frame = 1
Query:   16 CFELHSGKLLGDKRNREGRLYFKASS------EEELYAWMVPLRILVGSHNLVRTGAAGSMCYVDVARRAELVNTRNRAGETPLHYSAK----GEGRAERDTIGRVQIATWLVENGADVNAADRGGSTALHVAVKRGHVPXXXXXXXXXXXXXXXXXXXXSPLDLVKREQDVQDIAVGHFKAAERSPMLAPPVKLSSLTYLSFNLERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRPNYLWWAASYHMQNPVENLEPG 789
            CF ++S +LL  KRN+EGRLYFKA+S       E+ YAW+VPLR+L   HNL  + A G   YVD  RR ELV   N+  ETPLH++A+    G+  AE   + RVQI +WLVENGA++NAA   G T LH A+  GH+                     S LDL++R +D++ +AVG +KAA+ +P+L PP +L  LTYL+F++E+L M ST  L +PF+TVSVHD+ G+R+E  QD +APVV RP YLWW A++HMQNP+ENL  G
Sbjct: 1226 CFAIYSQELLRSKRNKEGRLYFKATSGKFFESSEDAYAWLVPLRVLCKDHNLGVSQAQGITRYVDPERRRELVRALNKYHETPLHFAARSSDTGDTGAESQAVARVQIGSWLVENGAEINAASVSGETPLHAAIAHGHLALAAALARRGGDLSLKTRAGTSCLDLLQRPEDLEHVAVGFYKAADLNPLLPPPSRLKGLTYLTFHVEKLNMQSTERLSAPFLTVSVHDAAGKRLEKPQDVNAPVVSRPTYLWWGANWHMQNPMENLGQG 1493          
BLAST of mRNA_S-firma_F_contig10930.1235.1 vs. uniprot
Match: A0A835ZQ73_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ73_9STRA)

HSP 1 Score: 197 bits (501), Expect = 8.650e-54
Identity = 120/296 (40.54%), Postives = 158/296 (53.38%), Query Frame = 1
Query:   16 CFELHSGKLLGDKRNREGRLYFKASSEEELYAWMVPLRILVGSHNLVRTGAAGSMCYVDVARRAELVNTRNRAGETPLHYSAKG---EGRAERD----TIGRVQ-----------------------------IATWLVENGADVNAADRGGSTALHVAVKRGHVPXXXXXXXXXXXXXXXXXXXX-SPLDLVKREQDVQDIAVGHFKAAERSPMLAPPVKLSSLTYLSFNLERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRPNYLWWAASYHMQNPVENLEPGT 792
             FELH+  LL DK+NREGRLYF+A +E  L  WMVPLR++VG +          M ++D+A R  LV   NRAGETPLH +A+    E  A R      + +V+                             +A WLVENGAD NA DR G+TALH A +  +                       S +D+VK E+++  +   HF   ER+P+LAPP KL   TYLS  LER  M ST  L SPF++VSV++ +G+  EA QD   P + RP YLWWA ++HMQNP+E L  G+
Sbjct: 1424 AFELHTPDLL-DKKNREGRLYFQAETEGSLQTWMVPLRMVVGLYQFRHDKRREPMEFLDLAGRRALVRVTNRAGETPLHLAARAREPEAAAARPGGPVAVQQVRQLAAHTCCQLPAREPAXXXXXXXXXXXXXVAAWLVENGADPNAQDRRGATALHDAAEHCNAAAAAVLAWKGGDLSLARPADGKSVVDIVKGERELALLMQKHFHPTERAPLLAPPEKLFGFTYLSLLLERTTMASTDALVSPFLSVSVYNGKGQLSEAQQDVVFPCLTRPGYLWWAQTWHMQNPLETLGAGS 1718          
BLAST of mRNA_S-firma_F_contig10930.1235.1 vs. uniprot
Match: A0A7R9YEI3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEI3_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.550e-36
Identity = 104/264 (39.39%), Postives = 153/264 (57.95%), Query Frame = 1
Query:   19 FELHSGKLLGDKRNREGRLYFKASSEEELYAWMVPLRILVGSHNLVRTGAAGS-----MCYVDVARRAELVNTRNRAGETPLHYSAK----GEGRAERDTIGRVQIATWLVENGADVNAADRGGSTALHVAVKRGHVPXXXXXXXXXXXXXXXXXXXXSPLDLVKREQDVQDIAVGHFKAAERSPMLAPPVKLSSLTYLSFNLERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRPNYLWWAASYHMQNPVENLE 783
            FE+HS  LL D+RNREGR+YFKASSE EL AW+ PLR+++ S         GS     M Y+D   R ++++ ++ AG + LH +A      +  +E      VQ+A WLVENG + + AD+ G   LH+A    ++     XXXXXXXXXXXXXXXX   +L+ +++ +  I        +R  +   PV +  LTY+S      +M  T++L  PF+T++V +SRG  VE AQ  S   + R  Y++W  ++HMQ  +ENL+
Sbjct:  699 FEIHSPLLL-DRRNREGRIYFKASSEIELQAWLAPLRVVLAS-------CGGSIQQREMFYIDAELRKKILSVKDGAGRSLLHRAADVMKPSQEASEVFNSRLVQLACWLVENGCNPDQADQRGCAPLHIATSACNLEFAAGXXXXXXXXXXXXXXXXXXXELLPQDK-LGRIMTRGLNKTKRDALKPRPVNIPDLTYVSVYFAAHMMAHTSELNEPFLTITVRNSRGHDVEEAQSMSGTALEREEYVYWGQTWHMQTALENLD 953          
BLAST of mRNA_S-firma_F_contig10930.1235.1 vs. uniprot
Match: W7TRG2_9STRA (Myosin-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRG2_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.800e-33
Identity = 95/303 (31.35%), Postives = 148/303 (48.84%), Query Frame = 1
Query:   16 CFELHSGKLLGDKRNREGRLYFKASSEEELYAWMVPLRILVGSHNLVRTGAAGSMCYVDVARRAELVNTRNRAGETPLH---YSAKGEGRAERDTIGR--VQIATWLVENGADVNAADRGGSTALH---------------------------VAVKRGHVPXXXXXXXXXXXXXXXXXXXXS--------PLDLV--KREQDVQDIAVGHFKAAERSPMLAPPVKLSSLTYLSFNLERLVMHSTAD--LQSPFITVSVHDSRGRRVEAAQDASAPVVRRPNYLWWAASYHMQNPVENLEPGT 792
            CFE+HS  LL D+RNREGRLYF+A SE EL AW+  LR+++G    +    +  + YV+   R +L+   N AGETPLH   +S + + R +R  I    VQ+A W+++NGADVNA D  G+T  H                           VA+     P                    +         +DL+   R++  + +  G  K +    +  PP +L + +Y+SF +E+L M  T+     +P+I +SV  ++   VE AQ  + P + +   +WW  +++MQ PVE+L PG+
Sbjct: 1634 CFEIHSPLLL-DRRNREGRLYFQAESEMELQAWLAKLRMVMGQTTHMYGRRSSPIQYVNSELRKKLMLCTNEAGETPLHALIFSLESKDR-KRSGIQPLVVQLAMWMIDNGADVNAQDLNGNTVAHRAALIGAGDSQRGVGGVGRRGRRAMKEVAMTAAVAPENKDTAFRLIAALAQKGANLTLRNKSNQTVVDLMAESRQEGTKLMGPGQVKMSADRTLFPPPFRLPACSYVSFFVEKLAMAETSQEKFPAPYIKISVFSAKQHLVERAQIITYPALVKGRSMWWGWTWNMQTPVEHLSPGS 1934          
BLAST of mRNA_S-firma_F_contig10930.1235.1 vs. uniprot
Match: A0A2D4BGA5_PYTIN (Myosin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGA5_PYTIN)

HSP 1 Score: 136 bits (342), Expect = 1.530e-32
Identity = 95/263 (36.12%), Postives = 145/263 (55.13%), Query Frame = 1
Query:   13 HCFELHSGKLLGDKRNREGRLYFKASSEEELYAWMVPLRILVGSHNLVRTGAAGSMCYVDVARRAELVNTRNRAGETPLHYSAKGEGRAERDTIGRVQIATWLVENGADVNAADRGGSTALHVAVKRGHVPXXXXXXXXXXXXXXXXXXXXSPLDLVKREQDVQDIAVGHFKAAE---RSPMLAPPVKLSSLTYLSFNLERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRP-NYLWWAASYHMQNPVENLEPG 789
            +CFE+HS +L   K N EG + F A +E+E++ WM  +R + G      +    +M  VD + R E VN +N+AG TPLH + + E   + +     ++  WL+ENGAD NAAD  G T LH AV              XXXXXXXXXXXXS +D+   E D++++ V    A +   R P+L PP +L+  TY+S  L  + + +   +Q+P   + V D +   VE AQ     +++   NY W+  S+++Q P+E+L+ G
Sbjct: 1658 NCFEIHSPRLKSSK-NPEGMMSFVADTEQEVHEWMAAIRKVHGVRIATMSPPFQNMICVDTSLRREYVNMKNKAGFTPLHLAVQNE---DDEGFEAAKVCVWLIENGADPNAADANGDTPLHYAVMLNRYDLVETLMKKXXXXXXXXXXXXSSIDIAI-EDDMKELLVPEVHACKDPTRLPLLKPPTRLADSTYVSVFLGAVAVATGPIMQTPHFNLYVLDYKKSVVETAQQTPNSLIQAGGNYWWFGNSWYLQTPLEHLKDG 1915          
BLAST of mRNA_S-firma_F_contig10930.1235.1 vs. uniprot
Match: A0A5D6XMP3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMP3_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.710e-30
Identity = 86/288 (29.86%), Postives = 134/288 (46.53%), Query Frame = 1
Query:   13 HCFELHSGKLLGDKRNREGRLYFKASSEEELYAWMVPLRILVGSHNLVRTGAAGSMCYVDVARRAELVNTRNRAGETPLHYSAKGEGRAERDTIGRVQIATWLVENGADVNAADRGGSTALHVAVKRGHVPXXXXXXXXXXXXXXXXXXXXSPLDLVKRE--QDVQDIAVGHFKAAER--------------------------SPMLAPPVKLSSLTYLSFNLERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRP-NYLWWAASYHMQNPVENLEPG 789
            +CFE+HS +L   K N EG L F A SE+E++ WM  +R + G      +    +M  +D A R E VN  N+ G TPLH + + E   E +     +++ WL+ENGADVNA D  G TALH AV                          SP D+   +  +++ D AV     AE                           +P+   P +L+  TY+S  L  + + +   +++P   + V D++G  VEAAQ     +++   NY W+  S+++Q P+E+L+ G
Sbjct: 1160 NCFEIHSPRLKSSK-NPEGVLSFVADSEDEVHEWMAAIRKVRGVRVKTSSPPFQNMICIDTALRREYVNMANKLGFTPLHVAVQNE---EDEGFEAAKVSVWLIENGADVNAVDANGDTALHYAVMLNRFDLVETLMKRGADPTVRNAKGLSPADIAPEDDIREILDPAVHAADVAEEEAAMVAAEQHAPQHGHPPANAPQRRSAPLRKSPARLADSTYVSVFLGAVAVATGPIMETPHFNLYVLDAKGAVVEAAQRTPKSLIQAGGNYWWFGNSWYLQTPLEHLKDG 1443          
BLAST of mRNA_S-firma_F_contig10930.1235.1 vs. uniprot
Match: A0A3M6VTL4_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTL4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.240e-25
Identity = 76/288 (26.39%), Postives = 134/288 (46.53%), Query Frame = 1
Query:    4 DLAHCFELHSGKLLGDKRNREGRLYFKASSEEELYAWMVPLRILVGSHNLVRTGAAGSMCYVDVARRAELVNTRNRAGETPLHYSAKGEGRAERDTIGRVQIATWLVENGADVNAADRGGSTALHVAVKRGHVPXXXXXXXXXXXXXXXXXXXXSPLDLVKREQDVQDIA--VGHFKAAERSP-----------------------MLAPPVKLSSLTYLSFNLERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRP-NYLWWAASYHMQNPVENLEPG 789
            D+  CFE+ S +L   K N +G L F A +E+E++ WM+ +R + G      +    +M  +D   R + VN +N+ G TPLH   + +   E +     ++  WL+ENGAD NA D  G TALH AV+                         S +++ + E D+++I   V H    E+ P                       ++ PP +L   TY+S  L  + + +   +++P   + + DS+G  ++ AQ     +++   NY W+  ++++Q P+E+L+ G
Sbjct: 1511 DVDCCFEIRSPRLKSSK-NPDGMLSFVADTEQEVHEWMLAIRKVQGVRVTTTSPPNHNMICIDSGLRRDYVNMKNKLGFTPLHLVVQND---EDEGFEAAKVCVWLIENGADPNAIDENGDTALHYAVELDRYDLVETLMKRGADSSIKNLKGLSAMEIAE-EDDLKEILSPVKHTLKVEKVPVDDDEPQADGIDPAKEMTPIASSLVPPPDRLRDSTYVSVFLGAVAVATGPVMETPHFNLYIMDSKGAIIDTAQRTPKSLIQTGGNYWWFGNTWYLQTPLEHLKDG 1793          
BLAST of mRNA_S-firma_F_contig10930.1235.1 vs. uniprot
Match: H3GCD5_PHYRM (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3GCD5_PHYRM)

HSP 1 Score: 114 bits (284), Expect = 7.720e-25
Identity = 74/288 (25.69%), Postives = 133/288 (46.18%), Query Frame = 1
Query:    4 DLAHCFELHSGKLLGDKRNREGRLYFKASSEEELYAWMVPLRILVGSHNLVRTGAAGSMCYVDVARRAELVNTRNRAGETPLHYSAKGEGRAERDTIGRVQIATWLVENGADVNAADRGGSTALHVAVKRGHVPXXXXXXXXXXXXXXXXXXXXSPLDLVKREQDVQDIA--VGHFKAAERSP-----------------------MLAPPVKLSSLTYLSFNLERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRP-NYLWWAASYHMQNPVENLEPG 789
            D+  CFE+ S +L   K N +G + F A +E+E++ WM+ +R + G      +    +M  +D   R + VN +N+ G TPLH + + +   E +     ++  WL+ENGAD NA D  G TALH AV+                         S +++ + E D+++I     H    E +P                       ++ PP +L   TY+S  L  + + +   +++P   + + D +G  V+ AQ     +++   NY W+  ++++Q P+E+L+ G
Sbjct: 1489 DVDCCFEIRSPRLKSSK-NPDGMMSFVADTEQEVHQWMLAIRKVQGVRVTTTSPPNHNMICIDSGLRRDYVNMKNKLGFTPLHLTVQND---EDEGFEAAKVCVWLIENGADPNAIDENGDTALHYAVELERYDLVETLMKRGADSSIKNLKGLSAMEIAE-EDDLKEILNPAKHILKVEETPVEPEEPQADGIVPVKKLAQITPSLVPPPDRLHDSTYVSVFLGAVAVATGPIMETPHFNLYIMDYKGAVVDTAQRTPKSLIQTGGNYWWFGNTWYLQTPLEHLKDG 1771          
BLAST of mRNA_S-firma_F_contig10930.1235.1 vs. uniprot
Match: A0A484E7A1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7A1_BRELC)

HSP 1 Score: 114 bits (284), Expect = 7.740e-25
Identity = 76/289 (26.30%), Postives = 132/289 (45.67%), Query Frame = 1
Query:    4 DLAHCFELHSGKLLGDKRNREGRLYFKASSEEELYAWMVPLRILVGSHNLVRTGAAGSMCYVDVARRAELVNTRNRAGETPLHYSAKGEGRAERDTIGRVQIATWLVENGADVNAADRGGSTALHVAVKRGHVPXXXXXXXXXXXXXXXXXXXXSPLDLVKREQDVQDIAVGH-------FKAAERSPM----------------LAPPVKLSSLTYLSFNLERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRP-NYLWWAASYHMQNPVENLEPGTRL 798
            D+  CF++ S +L    RN +G L F A SE+ ++ WM+ +R + G   +       +M  +D   R E V+ +N+ G TPLH + + +   E +    V+   WL+ENGAD NA D  G TALH AV+                         S L++ + E  ++ ++  +       F A    P+                L PP +L   TY+S  L  + + +   +++P   + + D RG  ++ AQ     +++   NY W+  ++++Q P+E+L+ G  L
Sbjct: 1510 DVDFCFKIQSPRLKSS-RNIDGTLSFGADSEKVVHEWMLAIRKVHGVRVVTTNPPNHNMICIDTGLRREYVSMQNKLGFTPLHLAVQND---EDEGFEAVKACVWLIENGADPNAIDVNGDTALHYAVELERFDLVETLMKRGANSSIKNLKGLSALEIAEDEDLIKILSASYNAFGVEEFSAVSGLPLADGLEPLKLTSLTSSLLPPPERLHDSTYVSVFLGAIAVATGPIMETPHYKLYIMDCRGAVIDTAQRTPTSLIQTGGNYWWFGNTWYLQTPLEHLKDGKTL 1794          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10930.1235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G3L5_ECTSI1.490e-14890.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBL8_9STRA2.500e-7648.88P-loop containing nucleoside triphosphate hydrolas... [more]
A0A835ZQ73_9STRA8.650e-5440.54P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7R9YEI3_9STRA8.550e-3639.39Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7TRG2_9STRA1.800e-3331.35Myosin-like protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A2D4BGA5_PYTIN1.530e-3236.12Myosin-like protein n=1 Tax=Pythium insidiosum Tax... [more]
A0A5D6XMP3_9STRA2.710e-3029.86Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3M6VTL4_9STRA1.240e-2526.39Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
H3GCD5_PHYRM7.720e-2525.69Uncharacterized protein n=19 Tax=Phytophthora TaxI... [more]
A0A484E7A1_BRELC7.740e-2526.30Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10930contigS-firma_F_contig10930:1184..4548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G3L5
PFAMsAida_C2,Ank_2,Ank_4,IQ,Myosin_head,PH
Max annot lvl2759|Eukaryota
KEGG koko:K10352,ko:K10357
KEGG Pathwayko04530,map04530
Evalue2.45e-149
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
COG categoryZ
BRITEko00000,ko00001,ko03019,ko03029,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-00_006620.1
Exons6
Model size798
Cds size798
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10930.1235.1prot_S-firma_F_contig10930.1235.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10930 1184..4548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.3569024-CDS-S-firma_F_contig10930:1183..12671622815637.3569024-CDS-S-firma_F_contig10930:1183..1267Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 1184..1267 +
1696949470.5649474-CDS-S-firma_F_contig10930:1183..12671696949470.5649474-CDS-S-firma_F_contig10930:1183..1267Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 1184..1267 +
1622815637.3707275-CDS-S-firma_F_contig10930:1992..21381622815637.3707275-CDS-S-firma_F_contig10930:1992..2138Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 1993..2138 +
1696949470.5776145-CDS-S-firma_F_contig10930:1992..21381696949470.5776145-CDS-S-firma_F_contig10930:1992..2138Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 1993..2138 +
1622815637.3831224-CDS-S-firma_F_contig10930:2563..26541622815637.3831224-CDS-S-firma_F_contig10930:2563..2654Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 2564..2654 +
1696949470.595818-CDS-S-firma_F_contig10930:2563..26541696949470.595818-CDS-S-firma_F_contig10930:2563..2654Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 2564..2654 +
1622815637.3962932-CDS-S-firma_F_contig10930:3118..33491622815637.3962932-CDS-S-firma_F_contig10930:3118..3349Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 3119..3349 +
1696949470.6060987-CDS-S-firma_F_contig10930:3118..33491696949470.6060987-CDS-S-firma_F_contig10930:3118..3349Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 3119..3349 +
1622815637.4119709-CDS-S-firma_F_contig10930:3800..39291622815637.4119709-CDS-S-firma_F_contig10930:3800..3929Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 3801..3929 +
1696949470.6158504-CDS-S-firma_F_contig10930:3800..39291696949470.6158504-CDS-S-firma_F_contig10930:3800..3929Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 3801..3929 +
1622815637.4227087-CDS-S-firma_F_contig10930:4431..45481622815637.4227087-CDS-S-firma_F_contig10930:4431..4548Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 4432..4548 +
1696949470.6256802-CDS-S-firma_F_contig10930:4431..45481696949470.6256802-CDS-S-firma_F_contig10930:4431..4548Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10930 4432..4548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10930.1235.1

>prot_S-firma_F_contig10930.1235.1 ID=prot_S-firma_F_contig10930.1235.1|Name=mRNA_S-firma_F_contig10930.1235.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=266bp
PDLAHCFELHSGKLLGDKRNREGRLYFKASSEEELYAWMVPLRILVGSHN
LVRTGAAGSMCYVDVARRAELVNTRNRAGETPLHYSAKGEGRAERDTIGR
VQIATWLVENGADVNAADRGGSTALHVAVKRGHVPLAAALVRRGGDVAVL
DRHGRSPLDLVKREQDVQDIAVGHFKAAERSPMLAPPVKLSSLTYLSFNL
ERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRPNYLWWAAS
YHMQNPVENLEPGTRL
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mRNA from alignment at S-firma_F_contig10930:1184..4548+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10930.1235.1 ID=mRNA_S-firma_F_contig10930.1235.1|Name=mRNA_S-firma_F_contig10930.1235.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3365bp|location=Sequence derived from alignment at S-firma_F_contig10930:1184..4548+ (Sphaerotrichia firma ET2_F female)
CCCGACCTGGCCCACTGCTTCGAGTTGCATTCTGGGAAGCTGCTCGGGGA CAAGCGGAACCGCGAGGGCCGGCTCTACTTTAAGGTAGGATGCGGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTTCTTTCTTAGAAAGCATC GCCCGCGCTTACCGGTCGACGGATGAAAAGACGCCGGCCTTTAGCCGGGA AAAAACGCAAGCACGCTTTCTAATTGTTGGAACTCCTGTTTAAGGGTTCC GTGTGTGTGTGTGTGTGTGTGTGTTTGTTTTTTCTTAGTTTGCATTGCCC AAGCTAACCGGTTGACCTACACCCAACAACGTTCGCAGGCGGAATGTCGG AGATAGGTTTAGCCTGTACTTGTAGCAGAAATTATCGCGCCTACTGCTGT ACTGCGCCTCTGGAGTTCAGTCGAGTTTCTTTTGCGAAACCCTTGAAGAG ACGGAGAACCAACACTATGAAAAGTGTGTGTGTGTGTTCGGTGCTTGCCT GATGGCGTTCGTGACAACGTCGGCTGCATGCACGCCGCACACGCGTGAGG TTTCCGGTTTTCTTTTGGGGGGGTTTGCTGGCACAGACTAGAGCGCTGTA AATAGGGTCGCCGTGCTGTCCCGGCGCTTTGGATGGTGTGGTCTGCACCG GCACATCTTTTCCCACCGCCGCCGCTGCTGTATATTGATGAGGCGTCAAG CGAGGGAGAGCTGCACACGGGTGCACGGTAGGCGATAGCCCTGCTGACCT TACGGGTATCGTTAACCTAAGCCCGGCCTCGCCGCGGCGGCGTTTTTCTT TTGGTTTAGGCCTCGAGCGAGGAGGAGCTGTACGCGTGGATGGTGCCCCT GCGGATCCTCGTCGGCAGCCACAACCTCGTCCGCACGGGAGCCGCGGGGT CGATGTGCTACGTCGACGTCGCGCGCAGGGCGGAGCTCGTCAACACGCGC AACAGGTTTGTCTGATGCCGCCTGCGCGTGCGGAAACCGTCTGCTCCGTT GCTCGGAATGTGCAGGCAGGACAGCAGTTTGTGTGTTCTCTTGGGGTCTC GCTTGTGATCGCTGTTCGCTTCGCAGCGACGCCCTGTCTCCTTTTTTTCT GTTTTTTTTTCTCCCCATGTTCTCCGTAGATGTGCGCGTGTTGCTGTGAG GCGGAGAACTGGCCCTCCCGTGCTTGCTTTTTGACTGTTGAAATGCACCA AAGGCCGCTTTCGACGCACGGCGGCCGTGATTGGTGCATCACCCCACGTC GATGTTTTTTGTGAGGGGAGGTTAAAGTGTACCGTGTGCCTGCGTGTACC TTCGTGCGTACGCAAACGAGCTTACTGTCCACAACGATACCGCGCGTCCG CTTTTTGCGACGCTCGTTTGGCGTCGTCAGGGCGGGCGAGACGCCGCTGC ACTACTCGGCGAAGGGCGAAGGTAGAGCCGAGCGGGACACCATCGGGAGG GTTCAGATCGCCACGTGGTTGGTGAGGAGTGAGGAGGAAGGCGCACACGC ACACACAGAGAGAGAGGAGATAGAGAGAAAGAGAGAGAGAGGGGGGGGGG GATAGAGAGAGAAAGGGAGAGAGAGAGGCCGACATATTCGATGTGGTCGC TCTTTCGTCCTTGGTTCGAGGCTTGGAAGATTGGCGGCGTTGTCGCGGTG TTATCATGTTATCATGCATGACGTGGTGTTGGCCGTTTTTTTTTTTCGAG TGTTTGGCCGTTCCGCGCACGGCAGAGTAGGTCGTTAGATGCGGGCCTGC GCACGCTGAATACCTACAGCACCTCCCACGGCATGTTTGTACACACCTTC CACCTGAATTCACGGCGCAGCAGTAGCGTTGGTCCTCCACGGCACGAAGC TCTAGCTCTAGCACCCAAGCAAAACAGGCAGTGTCCCCTGACTACTATCG CCCAACAACAAAAAAAACACAAAACCATTTCGCAGGTGGAGAACGGGGCC GACGTGAACGCCGCCGACCGCGGCGGCTCCACCGCCCTCCACGTGGCCGT CAAGAGGGGACACGTGCCGCTCGCCGCCGCCCTGGTCAGGCGCGGCGGCG ACGTGGCCGTCCTGGACCGGCACGGCCGCAGCCCGCTGGACCTCGTGAAG CGCGAGCAGGACGTGCAGGACATCGCGGTGGGGCACTTCAAGGCCGCCGA GCGGAGCCCGATGCTGGTGAGTCGGCCGGTTGATGTCGGTGTCGGGGGTC GGGTGGGTCGTCATACGGTCTGCCTCGCACTTGCGGCGCCCCCACTCGTG GTGGGACCGATGGTACCGAGGCGTTTTTGTGCTTGCTGGAGGGCTGGGTC GAGGGGGAATTCGTGAGGCTGAGGGTTGAAGGGTGGGTGGGACGTGTAAC GGCAATGTAACGGTGGAGGGGCCTGTGCGTATGAGTATATGCGTTTTTCC GAGAGGGGGTGAGCTTGTTTGGCTCGCCGCCCTCTGATGCCGCTGTTGTA ACAACCCCCGTGTTTTTTTTGTTTTATTTTTGGCCTCGGTCGTCGATGTC GCCTCCGCTGCCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC CGCCGCCGCCGCCAAAACGTGCGGTGCATGTCGCCGTCTTTTTCCCCCCG TCTCCAATCTGGCAAAGGCTCCCCCGGTGAAGCTTTCGTCGCTCACGTAC CTGTCGTTCAATCTGGAGAGGCTGGTAATGCACAGCACCGCCGACCTGCA GTCGCCGTTCATCACTGTGTCAGTCCACGACTCCAGGGGCCGCAGAGTGA GTGCGTTTTTTGGGGTTTTTTTTCTCCCCCTTAATTAACCCTGCCACGCT TTTGTCGGGATGAGGCGGTCTTGGGGACCCCGCCCGAGCGTCCTTGCACT CGCCGGAAAGTGTCGTGCGACCCCAGATTAGGAGATTATGAGTGCGTTGT TGTGAGACCCGGGATTATGAGTGCGTTGGTGTGAGACCCGAGATTGTGAG TGCGTTTTCGCACCTCTGGGTGCGCGTTTCCGCAACGAATCTCATCCTCT GCTCTCTTCTTTTTTTGCTTTTGGTCTCACGCTCATTTTCGCGTGCTCAT CTCATCTCCGGCCTTTCCTCCTCCTCAATCACGACGGCCGCATCGTCCCT ACCAAACCACCTCTGTTGTTTTCACACCCCCCCCCCCCCAAACCTTGTAC GAATTTTTACCGTCCCATCCCGCCCCGCTTCAAATTCCAACGACGCCCGA AAACACACGCACACGCCGCCCAACGCAACCCAACCCGGCCAACCCCAGGT GGAGGCGGCCCAGGACGCGAGCGCGCCGGTTGTCCGCCGCCCGAACTACC TGTGGTGGGCGGCCTCCTACCACATGCAGAACCCGGTGGAGAACCTGGAG CCAGGCACGCGGCTT
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Coding sequence (CDS) from alignment at S-firma_F_contig10930:1184..4548+

>mRNA_S-firma_F_contig10930.1235.1 ID=mRNA_S-firma_F_contig10930.1235.1|Name=mRNA_S-firma_F_contig10930.1235.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1596bp|location=Sequence derived from alignment at S-firma_F_contig10930:1184..4548+ (Sphaerotrichia firma ET2_F female)
CCCGACCTGGCCCACTGCTTCGAGTTGCATTCTGGGAAGCTGCTCGGGGA
CAAGCGGAACCGCGAGGGCCGGCTCTACTTTAAGCCCGACCTGGCCCACT
GCTTCGAGTTGCATTCTGGGAAGCTGCTCGGGGACAAGCGGAACCGCGAG
GGCCGGCTCTACTTTAAGGCCTCGAGCGAGGAGGAGCTGTACGCGTGGAT
GGTGCCCCTGCGGATCCTCGTCGGCAGCCACAACCTCGTCCGCACGGGAG
CCGCGGGGTCGATGTGCTACGTCGACGTCGCGCGCAGGGCGGAGCTCGTC
AACACGCGCAACAGGCCTCGAGCGAGGAGGAGCTGTACGCGTGGATGGTG
CCCCTGCGGATCCTCGTCGGCAGCCACAACCTCGTCCGCACGGGAGCCGC
GGGGTCGATGTGCTACGTCGACGTCGCGCGCAGGGCGGAGCTCGTCAACA
CGCGCAACAGGGCGGGCGAGACGCCGCTGCACTACTCGGCGAAGGGCGAA
GGTAGAGCCGAGCGGGACACCATCGGGAGGGTTCAGATCGCCACGTGGTT
GGGCGGGCGAGACGCCGCTGCACTACTCGGCGAAGGGCGAAGGTAGAGCC
GAGCGGGACACCATCGGGAGGGTTCAGATCGCCACGTGGTTGGTGGAGAA
CGGGGCCGACGTGAACGCCGCCGACCGCGGCGGCTCCACCGCCCTCCACG
TGGCCGTCAAGAGGGGACACGTGCCGCTCGCCGCCGCCCTGGTCAGGCGC
GGCGGCGACGTGGCCGTCCTGGACCGGCACGGCCGCAGCCCGCTGGACCT
CGTGAAGCGCGAGCAGGACGTGCAGGACATCGCGGTGGGGCACTTCAAGG
CCGCCGAGCGGAGCCCGATGCTGGTGGAGAACGGGGCCGACGTGAACGCC
GCCGACCGCGGCGGCTCCACCGCCCTCCACGTGGCCGTCAAGAGGGGACA
CGTGCCGCTCGCCGCCGCCCTGGTCAGGCGCGGCGGCGACGTGGCCGTCC
TGGACCGGCACGGCCGCAGCCCGCTGGACCTCGTGAAGCGCGAGCAGGAC
GTGCAGGACATCGCGGTGGGGCACTTCAAGGCCGCCGAGCGGAGCCCGAT
GCTGGCTCCCCCGGTGAAGCTTTCGTCGCTCACGTACCTGTCGTTCAATC
TGGAGAGGCTGGTAATGCACAGCACCGCCGACCTGCAGTCGCCGTTCATC
ACTGTGTCAGTCCACGACTCCAGGGGCCGCAGAGCTCCCCCGGTGAAGCT
TTCGTCGCTCACGTACCTGTCGTTCAATCTGGAGAGGCTGGTAATGCACA
GCACCGCCGACCTGCAGTCGCCGTTCATCACTGTGTCAGTCCACGACTCC
AGGGGCCGCAGAGTGGAGGCGGCCCAGGACGCGAGCGCGCCGGTTGTCCG
CCGCCCGAACTACCTGTGGTGGGCGGCCTCCTACCACATGCAGAACCCGG
TGGAGAACCTGGAGCCAGGCACGCGGCTTGTGGAGGCGGCCCAGGACGCG
AGCGCGCCGGTTGTCCGCCGCCCGAACTACCTGTGGTGGGCGGCCTCCTA
CCACATGCAGAACCCGGTGGAGAACCTGGAGCCAGGCACGCGGCTT
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