mRNA_S-firma_F_contig1093.1233.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1093.1233.1
Unique NamemRNA_S-firma_F_contig1093.1233.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1093.1233.1 vs. uniprot
Match: A0A4P5YSZ9_9BACT (BPL_N domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A4P5YSZ9_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 1.060e-8
Identity = 84/309 (27.18%), Postives = 117/309 (37.86%), Query Frame = 1 
Query:  187 GSVPWDDHGVATLVQARHISAT-LPVVLCAPHGGNAVDGDQSETLLVRPSTPPTDNNASGSGDSSGATRGGA-VSLIADVGTLQLVEEIDRRLTRKFSSGGGFATATDAPAVVAARFHRKYVDANRSLEDSAAVAVHPSCARAKQVHEYYHGAIETAVRALGSRGWGKPGASPSKNELQEDVDRETQSRLLLLDVHGQCKFVDKMLIGTCNGKTADLEALNATGKGFLWHLRRSLNTNDELPGVSAGKADKQTWAKQGESLGDQDGETARGHEAGGGDSVVVLPHCGDKEVPRYTGGYTVRRHGVFSRG 1107
            G+ P   +  A    A  ++A  LP++L APHGG A     +E                     +GA R  A +    D+ T +L + +++RL ++             P VV ARFHRKY+DANR  ED+           A   +E YH AI  A + + +R WG                     R ++LD+HGQ      +  GT NGKT     L  +G       R S+     L G  A +                            G +V       D E P Y+GG+TV RHG  S G
Sbjct:   37 GAGPDATNSQAVATAAMTVAAGGLPIILTAPHGGRAALPGVAER------------------QGAGAARFNAKIDTNTDLLTEKLADALEQRLGKR-------------PYVVIARFHRKYLDANRRPEDAF------ESPAATATYEAYHAAIAAACQEVTAR-WG---------------------RGVVLDIHGQASQPGVVFRGTQNGKTV-AHLLQQSG-------RESVYGETSLFGQLARQ----------------------------GFAVFPAVGSSDPEEPSYSGGHTVGRHGSSSGG 250
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BLAST of mRNA_S-firma_F_contig1093.1233.1 vs. uniprot
Match: A0A2E6MVV5_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E6MVV5_9PLAN)

HSP 1 Score: 58.5 bits (140), Expect = 1.530e-5
Identity = 54/194 (27.84%), Postives = 83/194 (42.78%), Query Frame = 1 
Query:  241 ISATLPVVLCAPHGGNAVDGDQSETLLVRPSTPPTDNNASGSGDSSGATRGGAVSLIADVGTLQLVEEIDRRLTRKFSSGGGFATATDAPAVVAARFHRKYVDANRSLEDSAAVAVHPSCARAKQVHEYYHGAIETAVRALGSRGWGKPGASPSKNELQEDVDRETQSRLLLLDVHGQCKFVDKMLIGTCNGKT 822
            I   LP+++ APHGG        E +   P  P  +N ++              ++ +D  T QL   I  +L +K +           P ++AA+FHR Y+DANRSLE++          +AK V+  YH A++ A+                   L+     +T    LL+DVHGQ +  D +  GT  G T
Sbjct:  154 IRGDLPIIISAPHGGR-------EAI---PGVPKRNNESTPK-----------FAIKSDTNTYQLASTITEQLEKKLNG---------KPWLIAAKFHRSYLDANRSLENAL------EHDKAKAVYTAYHQALQHAI-------------------LEITCQYKTG---LLIDVHGQSRLPDVVWRGTRRGTT 289
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BLAST of mRNA_S-firma_F_contig1093.1233.1 vs. uniprot
Match: A0A545U8X5_9GAMM (Uncharacterized protein n=1 Tax=Aliikangiella coralliicola TaxID=2592383 RepID=A0A545U8X5_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 9.230e-5
Identity = 50/193 (25.91%), Postives = 82/193 (42.49%), Query Frame = 1 
Query:  241 ISATLPVVLCAPHGGNAVDGDQSE-TLLVRPSTPPTDNNASGSGDSSGATRGGAVSLIADVGTLQLVEEIDRRLTRKFSSGGGFATATDAPAVVAARFHRKYVDANRSLEDSAAVAVHPSCARAKQVHEYYHGAIETAVRALGSRGWGKPGASPSKNELQEDVDRETQSRLLLLDVHGQCKFVDKMLIGTCNG 816
            +  T+P+++ APHGG+    + +E T       P  D N                 ++ D  T  + ++I  + ++K+   GG       P +VAA FHRKY+DANR    +           A+  +E YH  IET +                 N++Q    +      +LLD+HGQ +   +++ GT NG
Sbjct:   34 VEGTIPILITAPHGGSEQPANVNERTGFDLNGIPVEDFN-----------------IVKDSWTKGIAKDIVSKYSQKY---GG------TPYIVAAEFHRKYIDANRPEHQAF------ESKNARLYYESYHSKIETFI-----------------NDIQRKFGQG-----ILLDIHGQAQHPAEIIRGTRNG 172
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1093.1233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A4P5YSZ9_9BACT1.060e-827.18BPL_N domain-containing protein n=1 Tax=Verrucomic... [more]
A0A2E6MVV5_9PLAN1.530e-527.84Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A545U8X5_9GAMM9.230e-525.91Uncharacterized protein n=1 Tax=Aliikangiella cora... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1093contigS-firma_F_contig1093:16742..18694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1210884.HG799463_gene10325
Max annot lvl2|Bacteria
Evalue7.9e-05
EggNOG OGsCOG3741@1|root,COG3741@2|Bacteria
DescriptionN-formylglutamate amidohydrolase
COG categoryE
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_005540.1
Exons2
Model size1568
Cds size1101
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1093.1233.1prot_S-firma_F_contig1093.1233.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1093 16925..18410 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.2752273-UTR-S-firma_F_contig1093:16741..169241622815637.2752273-UTR-S-firma_F_contig1093:16741..16924Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1093 16742..16924 +
1696949470.5093327-UTR-S-firma_F_contig1093:16741..169241696949470.5093327-UTR-S-firma_F_contig1093:16741..16924Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1093 16742..16924 +
1622815637.3195453-UTR-S-firma_F_contig1093:18410..186941622815637.3195453-UTR-S-firma_F_contig1093:18410..18694Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1093 18411..18694 +
1696949470.5530903-UTR-S-firma_F_contig1093:18410..186941696949470.5530903-UTR-S-firma_F_contig1093:18410..18694Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1093 18411..18694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.2879012-CDS-S-firma_F_contig1093:16924..175501622815637.2879012-CDS-S-firma_F_contig1093:16924..17550Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1093 16925..17550 +
1696949470.5216317-CDS-S-firma_F_contig1093:16924..175501696949470.5216317-CDS-S-firma_F_contig1093:16924..17550Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1093 16925..17550 +
1622815637.3042216-CDS-S-firma_F_contig1093:17935..184101622815637.3042216-CDS-S-firma_F_contig1093:17935..18410Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1093 17936..18410 +
1696949470.5336132-CDS-S-firma_F_contig1093:17935..184101696949470.5336132-CDS-S-firma_F_contig1093:17935..18410Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1093 17936..18410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1093.1233.1

>prot_S-firma_F_contig1093.1233.1 ID=prot_S-firma_F_contig1093.1233.1|Name=mRNA_S-firma_F_contig1093.1233.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=367bp
MGSVPWDDHGVATLVQARHISATLPVVLCAPHGGNAVDGDQSETLLVRPS
TPPTDNNASGSGDSSGATRGGAVSLIADVGTLQLVEEIDRRLTRKFSSGG
GFATATDAPAVVAARFHRKYVDANRSLEDSAAVAVHPSCARAKQVHEYYH
GAIETAVRALGSRGWGKPGASPSKNELQEDVDRETQSRLLLLDVHGQCKF
VDKMLIGTCNGKTADLEALNATGKGFLWHLRRSLNTNDELPGVSAGKADK
QTWAKQGESLGDQDGETARGHEAGGGDSVVVLPHCGDKEVPRYTGGYTVR
RHGVFSRGAAGCRNGEDRRTVAVDAVQLEFGSLLRRTSEAREVVAEAVAT
AIFRYLQNQAWAGTGG*
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mRNA from alignment at S-firma_F_contig1093:16742..18694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1093.1233.1 ID=mRNA_S-firma_F_contig1093.1233.1|Name=mRNA_S-firma_F_contig1093.1233.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1953bp|location=Sequence derived from alignment at S-firma_F_contig1093:16742..18694+ (Sphaerotrichia firma ET2_F female)
CACCTCGCCACCTGCCCCCTTTAGCCCGTGTTGTGTTTTTGTATTATATG
ACGCATGCCATTCCCTCTTGCACTAGCGGAGGGTTTAGGCCAGGATTCCG
AGCAGCGAGCGCGGTGTCGTTCTCCCGGAGGGTAACCGCGAAACACAAAT
TACATTTATTAGACGCGGCTTTTCCTTTTCATCATGGGTTCCGTGCCTTG
GGACGATCACGGAGTAGCCACGCTTGTCCAGGCTCGGCACATCAGTGCAA
CCCTGCCTGTTGTGCTATGTGCTCCGCATGGAGGCAACGCTGTAGACGGC
GACCAATCTGAGACCCTCCTCGTACGCCCTTCGACCCCACCAACGGACAA
CAACGCATCCGGCAGTGGAGATAGCAGCGGAGCAACACGAGGGGGGGCAG
TGTCCCTTATCGCGGACGTGGGCACCCTGCAGTTGGTCGAGGAAATCGAC
CGACGGTTGACCCGAAAATTCAGCAGCGGGGGGGGGTTTGCAACTGCAAC
AGATGCGCCGGCAGTGGTGGCCGCCAGGTTCCATCGGAAGTACGTAGATG
CGAACCGATCCCTAGAAGACAGTGCTGCCGTCGCGGTGCACCCCTCGTGC
GCTAGAGCGAAGCAGGTGCATGAGTATTACCACGGAGCGATCGAGACCGC
GGTTAGAGCGTTGGGATCGCGTGGTTGGGGGAAACCTGGGGCATCACCAA
GCAAAAACGAACTCCAGGAGGATGTGGACAGAGAGACGCAGAGCCGGCTG
CTGTTGCTCGACGTGCACGGCCAATGCAAATTTGTAGACAAAATGCTGAT
TGGGACTTGGTGAGCCGTTGGCGTTCTAGCAACGTAGTCCAGATTTATCG
CTGATGGCCCCTGGCAGCCCAGAGCTACCAGAGTAGCAAAGACATGTACC
GATATCCTGTAGTATTCGTTGCATGTACACGGTGACTAATATGGTGTTTG
TGTCATCATTCTTATATCACGACCTACACCAGTCTGCGGGTAGTTTTGAC
GTTTTTGGTCAGACGGGTCATGCGTCATTTGATTCGACAGTAGTGAATCT
CGACAAGTTTTGACGATACCAGCTCCGAGGACTGTCCAGTGGTGCACAAC
ACGCCTGTGTGTCGGATTCCACATTACGAACTGAATTGTCAAACAACCCC
CCCGTAAACGCTACCTTTCTTTCGGGCAACGCAAAAAAACGCAGCAACGG
CAAGACGGCTGACCTGGAAGCTCTCAATGCTACCGGAAAGGGCTTCCTGT
GGCATCTGAGGCGTAGCTTGAACACCAACGACGAGCTTCCAGGAGTAAGC
GCAGGGAAAGCAGACAAACAAACGTGGGCGAAACAGGGAGAGAGTCTAGG
CGACCAGGACGGCGAGACGGCACGTGGGCACGAAGCGGGGGGTGGTGATT
CCGTGGTGGTTCTGCCGCATTGTGGGGACAAAGAGGTACCCAGGTACACT
GGCGGTTACACGGTCAGACGGCACGGTGTTTTCTCAAGAGGGGCTGCAGG
GTGCAGAAACGGGGAGGATCGTCGCACAGTTGCAGTGGACGCTGTTCAGC
TGGAGTTCGGCTCGCTGTTGCGACGTACGTCCGAGGCTCGCGAGGTGGTG
GCGGAGGCCGTGGCAACGGCGATTTTCCGCTACCTTCAGAACCAGGCATG
GGCGGGAACGGGTGGATGATCTTTGTGGCCGGGAGAGAGAGGCATGAGGG
GAGATTTACCCACGAGCATGTGGAAATGCCGCTGGTTGGCCAGTGGAAAC
TATTTGTTTTGGCCTTTAGGAGTCTGAGCGTTGGGAGCAGAGGGCTCGAG
CTGTCGCGAAGGTCTGAACAAGTACCAGCAACATGCAACGGCACAAAACA
AACGGTACTGCGAGTTTGTGTCGTCACGACGCTTAGCGTCCAGCGCTCTG
CACGTTCCTTAGTACGGCAGCACCAGGCATACATATGGCGTTAGTCTAGT
GAC
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Coding sequence (CDS) from alignment at S-firma_F_contig1093:16742..18694+

>mRNA_S-firma_F_contig1093.1233.1 ID=mRNA_S-firma_F_contig1093.1233.1|Name=mRNA_S-firma_F_contig1093.1233.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2202bp|location=Sequence derived from alignment at S-firma_F_contig1093:16742..18694+ (Sphaerotrichia firma ET2_F female)
ATGGGTTCCGTGCCTTGGGACGATCACGGAGTAGCCACGCTTGTCCAGGC
TCGGCACATCAGTGCAACCCTGCCTGTTGTGCTATGTGCTCCGCATGGAG
GCAACGCTGTAGACGGCGACCAATCTGAGACCCTCCTCGTACGCCCTTCG
ACCCCACCAACGGACAACAACGCATCCGGCAGTGGAGATAGCAGCGGAGC
AACACGAGGGGGGGCAGTGTCCCTTATCGCGGACGTGGGCACCCTGCAGT
TGGTCGAGGAAATCGACCGACGGTTGACCCGAAAATTCAGCAGCGGGGGG
GGGTTTGCAACTGCAACAGATGCGCCGGCAGTGGTGGCCGCCAGGTTCCA
TCGGAAGTACGTAGATGCGAACCGATCCCTAGAAGACAGTGCTGCCGTCG
CGGTGCACCCCTCGTGCGCTAGAGCGAAGCAGGTGCATGAGTATTACCAC
GGAGCGATCGAGACCGCGGTTAGAGCGTTGGGATCGCGTGGTTGGGGGAA
ACCTGGGGCATCACCAAGCAAAAACGAACTCCAGGAGGATGTGGACAGAG
AGACGCAGAGCCGGCTGCTGTTGCTCGACGTGCACGGCCAATGCAAATTT
GTAGACAAAATGCTGATTGGGACTTGATGGGTTCCGTGCCTTGGGACGAT
CACGGAGTAGCCACGCTTGTCCAGGCTCGGCACATCAGTGCAACCCTGCC
TGTTGTGCTATGTGCTCCGCATGGAGGCAACGCTGTAGACGGCGACCAAT
CTGAGACCCTCCTCGTACGCCCTTCGACCCCACCAACGGACAACAACGCA
TCCGGCAGTGGAGATAGCAGCGGAGCAACACGAGGGGGGGCAGTGTCCCT
TATCGCGGACGTGGGCACCCTGCAGTTGGTCGAGGAAATCGACCGACGGT
TGACCCGAAAATTCAGCAGCGGGGGGGGGTTTGCAACTGCAACAGATGCG
CCGGCAGTGGTGGCCGCCAGGTTCCATCGGAAGTACGTAGATGCGAACCG
ATCCCTAGAAGACAGTGCTGCCGTCGCGGTGCACCCCTCGTGCGCTAGAG
CGAAGCAGGTGCATGAGTATTACCACGGAGCGATCGAGACCGCGGTTAGA
GCGTTGGGATCGCGTGGTTGGGGGAAACCTGGGGCATCACCAAGCAAAAA
CGAACTCCAGGAGGATGTGGACAGAGAGACGCAGAGCCGGCTGCTGTTGC
TCGACGTGCACGGCCAATGCAAATTTGTAGACAAAATGCTGATTGGGACT
TGCAACGGCAAGACGGCTGACCTGGAAGCTCTCAATGCTACCGGAAAGGG
CTTCCTGTGGCATCTGAGGCGTAGCTTGAACACCAACGACGAGCTTCCAG
GAGTAAGCGCAGGGAAAGCAGACAAACAAACGTGGGCGAAACAGGGAGAG
AGTCTAGGCGACCAGGACGGCGAGACGGCACGTGGGCACGAAGCGGGGGG
TGGTGATTCCGTGGTGGTTCTGCCGCATTGTGGGGACAAAGAGGTACCCA
GGTACACTGGCGGTTACACGGTCAGACGGCACGGTGTTTTCTCAAGAGGG
GCTGCAGGGTGCAGAAACGGGGAGGATCGTCGCACAGTTGCAGTGGACGC
TGTTCAGCTGGAGTTCGGCTCGCTGTTGCGACGTACGTCCGAGGCTCGCG
AGGTGGTGGCGGAGGCCGTGGCAACGGCGATTTTCCGCTACCTTCAGAAC
CAGGCATGGGCGGGAACGGGTGGATGACAACGGCAAGACGGCTGACCTGG
AAGCTCTCAATGCTACCGGAAAGGGCTTCCTGTGGCATCTGAGGCGTAGC
TTGAACACCAACGACGAGCTTCCAGGAGTAAGCGCAGGGAAAGCAGACAA
ACAAACGTGGGCGAAACAGGGAGAGAGTCTAGGCGACCAGGACGGCGAGA
CGGCACGTGGGCACGAAGCGGGGGGTGGTGATTCCGTGGTGGTTCTGCCG
CATTGTGGGGACAAAGAGGTACCCAGGTACACTGGCGGTTACACGGTCAG
ACGGCACGGTGTTTTCTCAAGAGGGGCTGCAGGGTGCAGAAACGGGGAGG
ATCGTCGCACAGTTGCAGTGGACGCTGTTCAGCTGGAGTTCGGCTCGCTG
TTGCGACGTACGTCCGAGGCTCGCGAGGTGGTGGCGGAGGCCGTGGCAAC
GGCGATTTTCCGCTACCTTCAGAACCAGGCATGGGCGGGAACGGGTGGAT
GA
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