mRNA_S-firma_F_contig1093.1232.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1093.1232.1 vs. uniprot
Match: D7FKB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKB1_ECTSI) HSP 1 Score: 423 bits (1087), Expect = 1.370e-125 Identity = 350/823 (42.53%), Postives = 417/823 (50.67%), Query Frame = 1
Query: 271 ILIAGSLSGVVQYRPGSRH-------EGRERQHDPAGAQPPSAYSSAHEAQLKNISDSSSLWPSTTLSSAQELAAHAVVNPMLEAIEDGAQSLLEALEAAS-------SPXXXXXXXXXXXXTVKPTTSTMTARSTNAAADDHPLRDDSQTRCSMTVDVRRRQNKASRFAFGGDDGFDDPATCGTFALRRLCLCGLGFALLPPASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDRLVKVKAEGXXXXXXXXEG-IVVQASRRGTNGTCMISVSDLQKAQARSFGYAKRRARIAAAIEENRPPPAVNRSGSLNSRITTGGKAGGVGTLLRDD------------GTDDDATNVLDVTPGAAGQPEGAEVGPG------KPNRPSKRDRTKSGKQMMPASPPVFSRPTLPPEDYCLGCRRVVLGHPLDVISYRCGKGDQHLIKXXXXXXXXEAAEVARTAGMGGALALHVVPV---AGADERYLVKRAGFGD-QPKSAVEAGSSGAGSGGGRRGTRNGGVGAAAVSEALGDKAVETVAEQLGSAIKGRRFEHDASVEKLAEAHARGKEAKEVKLDRKVDFRRRLAAAASEAHQEIETVALRRQLLRGGLPSSRKSXXXXXXXXXXDAVAPPLARRVKAATGDPGQGLGDGSKWDENGDMIEPDPATIATAXXXXXXXXXXESLARWNQXXXXXXXXRLQQLIVEMKDAVDGGEGGDVRRCRPTLRRGSGSGSVDSRRSGS----------RVSISGSGIYRDLAQGVDASHAAILSSMRADGVDPRAYLDDRRTAFRDVV---EEQKNAFL 2589
+ + G SGVVQY P SR G E++H A P + + S WPST L SAQELA+HA+V+PMLE IEDGAQSLL+ALEA+S SP + T++ T+ S A D R D+ R R + + ++ A D FDDPATCGTFALRRLCLCGLGFALLPP S A D+R G + A+RRG G CM+ V +LQKA+ARSFG+AKRRARI AAIEEN+PPPA RS LN R+ GG G G+ G+ ++ + V+P AAG+ E AE G + +R DRT + +PP P + C C VLGHPLD IS R G + AA A GA A P A D K AGFG + SA GS GA G RG R GGVGAAAVS+ALGD AVE VA QLG AI RR +HD EKLAEA RG+EAKE+KLDRKVD RRRLAAAA+EAHQEIET+ALRR+LL GG PSSRK + V AA PG + K ++ + PA + T SLA+WNQ RLQQL+V M+DAV GGD RPTLRRGS S S SG+ R SISGSGIYRDLA+GVDA+H+AILSSMR+DGVD RAYLD+RR AF V EEQ++AFL
Sbjct: 1 MFVLGFKSGVVQY-PASRQMQQQQEQHGEEKRHTQNAAMPSPVTKKYGHNDGQQAEEPS--WPSTQLFSAQELASHALVHPMLEDIEDGAQSLLKALEASSRVAGSSASPTPRAEEELEAHTAMSATSTITTSSSFVTTAADGQARGDANVRQHGQRSEERSRERTTKVA-AIDSDFDDPATCGTFALRRLCLCGLGFALLPPESAATVAGRKRRQHGAKTSRGNTLTNGHRSCGGRGRGEG----DERAEARSGTGSDAGLAGAAATLFAPANRRGVKGMCMVGVEELQKARARSFGHAKRRARITAAIEENKPPPAPKRSIGLNDRMNPGGTKGRTGSXXXXXXXXXXXXXXXXVGSRPESGDSDGVSPEAAGRSEVAEAKRGTSSGLVRGHRSGDSDRTTT-------TPPHAPTPC---SNCCPLCGLAVLGHPLDTISSRHRGGGHDPTQHIQRQQPRGAAPAAGARTGPGASADFKPPKPLGAAPDADCARKPAGFGTTRAISAGWVGSDGASPG--VRGKRTGGVGAAAVSQALGDAAVEAVARQLGEAISRRRHDHDKFTEKLAEAQTRGQEAKELKLDRKVDLRRRLAAAANEAHQEIETIALRRRLLHGGSPSSRKRV---------------TSGGVGAANA-PGDSFPEDDKRGQDDLHVNQTPAALGTGPPTASAL----SLAQWNQHKKQDQEQRLQQLMVAMRDAVS--RGGDESGRRPTLRRGSSSAGSRSTSSGTNSSARGGLSGRGSISGSGIYRDLARGVDAAHSAILSSMRSDGVDARAYLDERRAAFHGVALDEEEQRDAFL 781
BLAST of mRNA_S-firma_F_contig1093.1232.1 vs. uniprot
Match: A0A6H5KBZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ3_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 7.730e-7 Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1
Query: 3409 KRLALKEEREVTAARLKRGEFRYIRGKLVFREAKGALLMAANNRG 3543
++L+L+ E+EV ARLKRGEFRY+RG+LV+ EAKG LLMA NNRG
Sbjct: 276 RKLSLRAEKEVAMARLKRGEFRYLRGRLVYHEAKGGLLMAINNRG 320 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1093.1232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1093.1232.1 >prot_S-firma_F_contig1093.1232.1 ID=prot_S-firma_F_contig1093.1232.1|Name=mRNA_S-firma_F_contig1093.1232.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=1182bp MTWCGGVDDGLRPILCRSLEALLQRDRSFAQSFVRDRRALQRIIKLVAQEback to top mRNA from alignment at S-firma_F_contig1093:7297..16571- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1093.1232.1 ID=mRNA_S-firma_F_contig1093.1232.1|Name=mRNA_S-firma_F_contig1093.1232.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=9275bp|location=Sequence derived from alignment at S-firma_F_contig1093:7297..16571- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1093:7297..16571- >mRNA_S-firma_F_contig1093.1232.1 ID=mRNA_S-firma_F_contig1093.1232.1|Name=mRNA_S-firma_F_contig1093.1232.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=7092bp|location=Sequence derived from alignment at S-firma_F_contig1093:7297..16571- (Sphaerotrichia firma ET2_F female)back to top |